G352974


Basic Information

Item Value
gene id G352974
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 41917045 ~ 41918760 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU399747
GagacttcaaaaccttattcatTGACAGTCTTTTATTGTCattaatgaatgtgttattcaatgagATTTTATAGGCTGTAGTAGTAAAGGCCgaattcaatatttttttagGCAATATGGGAATTTGTTTTAGGTAATATGGGAATTTGTTTTAGGCAATATGGGAATTTGTTTTAAGCAATATGGGAATTTGTTTTAGGTAATATGGGAATTTGTTTTAGGCAATATGGGAATTTGTTTTAAGCAATATGGGAATTTGTTTTGGCAAAAttagagtatacccacttcttggcactcagcattaaggagagATTGGGGGTGTGGCCCtgcgatagactagtgtcctgtccagggggtgtcctggtacatcaagctgtctctctacagaaacaggagacagactagtgtcctgtccccattctgtacattaccttggaaataATGGACAATGCACAGGGACGAGGCGGAGCCGAGTTTGCAGAGTTCATTTTGCCAAGGTCATGTACAGAACTGAGATGTTTATCCCGCTTATACCACAAACAATACCAAAGCACACGTTTACCGGTATTGTCACGATGTTCGTAATAATGATGGTTGGAGAGTACTTCGAGTTCCACATGCTTTTAATGAATAAAGTGAAACTTAagcaaatacaaaacaaataaagAATAAACTAACCGTGACGTCAATGCAGTGccaacaggcaactaaacataaacaatatcccataacccacaggtgagaaaaatgctacttaagtatgatccccaattagagacaacgataaccagctgcctctaattgggaatcatacatacaaacatacaaacatcaccaacatagaaaatgaaACTCGTCAGGACACTCAACACTGTTCATTTACAAGGAGATTGCATAGCATATCAAACACTAGGCTAGAAGCCCAGCTAAATAGTTTGTTTCTAGCCAACCTGCCAATATGACAAGcgaattaaaaaaaatactagTTGCTGAAAATAGCTGGTGAAACTAGAAATATGTGGGAGGATTTGACATCTTTAGCAGCAAAGGGGACAGGAAAAATGTATGTTCATCACTCACCTCATTAGGTCATCAATCAGATGCTCTGCAAAAACAAATCAATGCTAGCTAAGCTTTTCCTCATTGGACCTGTGTTTACAATGTATCCTATTTCAGTATGAGTGGTTGTTGGTTTATCTTTCTGTTACTTTGTAGAAAGTACAGTCTGCATGTGTAGGTGCATATTGCGTTATGATTGCTAGGTGTCCCGAAATCTTTTCCCAACTGTCCCGATATCTGGTTTTAATGTAcattctagaatgcccttctgaCCAAACAGAAACAACGATGCTGTGGTATACATACTATTAGTaagtattattataatttttgtaTCCAGTCGGATTAAcattccaaacagcctacccgaccgttCGGAGGTGTCCGCATGGTCCCAAAGCACACCCTTGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU399747 True 1471 lncRNA 0.39 3 41917045 41918760

Neighbor

gene id symbol gene type direction distance location
LOC110522643 LOC106608291 coding upstream 235099 41676261 ~ 41681946 (+)
LOC110522642 LOC106608292 coding upstream 241365 41664602 ~ 41675680 (+)
LOC110522641 LOC106608294 coding upstream 265619 41648792 ~ 41651426 (+)
LOC110522636 LOC106608297 coding upstream 471777 41426880 ~ 41445268 (+)
LOC110521114 LOC106608298 coding upstream 831357 41071482 ~ 41085688 (+)
LOC118964483 NA coding downstream 400641 42319401 ~ 42328637 (+)
eif2b4 LOC106608321 coding downstream 410982 42329742 ~ 42364354 (+)
LOC110522651 LOC106608319 coding downstream 452060 42370820 ~ 42433129 (+)
si:ch211-278j3.3 LOC106608328 coding downstream 541598 42460358 ~ 42514461 (+)
si:dkey-71h2.2 LOC104922452 coding downstream 603026 42521786 ~ 42630516 (+)
G352972 NA non-coding upstream 9858 41905742 ~ 41907187 (+)
G352970 NA non-coding upstream 22901 41893588 ~ 41894144 (+)
G352951 NA non-coding upstream 48506 41868277 ~ 41868539 (+)
G352941 NA non-coding upstream 82588 41834179 ~ 41834457 (+)
G352939 NA non-coding upstream 85780 41830763 ~ 41831265 (+)
G352976 NA non-coding downstream 1556 41920316 ~ 41920848 (+)
G352981 NA non-coding downstream 23785 41942545 ~ 41942800 (+)
G352982 NA non-coding downstream 25762 41944522 ~ 41944724 (+)
G352985 NA non-coding downstream 30672 41949432 ~ 41949638 (+)
G352986 NA non-coding downstream 35998 41954758 ~ 41955098 (+)
G352477 NA other upstream 550438 41366201 ~ 41366607 (+)
G352341 NA other upstream 703096 41211113 ~ 41214206 (+)
G352340 NA other upstream 706047 41210247 ~ 41210998 (+)
G352136 LOC106608303 other upstream 926540 40990159 ~ 40990505 (+)
G351441 NA other upstream 1780272 40134687 ~ 40136773 (+)
G353125 NA other downstream 205916 42124676 ~ 42125759 (+)
G353328 LOC106608329 other downstream 523995 42442755 ~ 42443381 (+)
G353339 NA other downstream 532272 42451032 ~ 42451409 (+)
G353820 NA other downstream 992126 42910886 ~ 42912213 (+)

Expression


Co-expression Network