G352991


Basic Information

Item Value
gene id G352991
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 41971393 ~ 42031934 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU399770
GCTGTGCTATGGAGAGTCCGAACTTGACGATGACCACGTCTGAGATGTTGGGTACGGGTCTGGACCACTTGTTGTACCCGATGAAGAGCTTTTTGAAAAGCTCGTCCTCCGCATGTGAATGGGCTTTCTCAAGACAGAAAACTACAGGGGCCACAAGAGACACGGCGCTCACAGTTTTATAACAAACCTCTTGTTGTATCcaagacatcaaatcaaattgtatttgttacatgtgccaaatacaacaggtgtagtagaccttacagtgaaatgctgaatactacaggtgtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttaaagtgaaatgctgaatactacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatactacaggtgtagacctcacagtgaaatgctgaatactacaggtgtagacctcacagtgaaatgctgaatactacaggtgtagacctcacagtgaaatgctgaatactacaggtgtagacctcacagtgaaatgctgaatactacaggtgtagacctcacagtgaaatgctgaatactacaggtgtagacctcacagtgaaatgctgaatactacaggtgtagaccttacagtgaaatgc
>TU399771
GCTGTGCTATGGAGAGTCCGAACTTGACGATGACCACGTCTGAGATGTTGGGTACGGGTCTGGACCACTTGTTGTACCCGATGAAGAGCTTTTTGAAAAGCTCGTCCTCCGCATGTGAATGGGCTTTCTCAAGACAGAAAACTACAGGGGCCACAAGAGACACGGCGCTCACAGTTTTATAACAAACCTCTTGTTGTATCcaagacatcaaatcaaattgtatttgttacatgtgccaaatacaacaggtgtagtagaccttacagtgaaatgctgaatactacaggtgtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttaaagtgaaatgctgaatactacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatactacaggtgtagacctcacagtgaaatgctgaatactacaggtgtagacctcacagtgaaatgctgaatactacaggtgtagacctcacagtgaaatgctgaatactacaggtgtagacctcacagtgaaatgctgaatactacaggtgtagacctcacagtgaaatgctgaatactacaggtgtagacctcacagtgaaatgctgaatactacaggtgtagaccttacagtgaaatgc
>TU399768
ttagtagaccttacagtgaaatgccgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgcagaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgccgaatacaacaggtgtagtagacctcacagtgaaatgcagaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatactgaatacaacaggtgtagtagtccttacagtgaaatgcttacttatgagccctgaaccaacaatgcagttttaaga
>TU399769
ttagtagaccttacagtgaaatgccgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagtccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgcagaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagtccttacagtgaaatgcttacttatgagccctgaaccaacaatgcagttttaaga

Function

NR:

description
ceramide synthase 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU399770 False 668 lncRNA 0.43 2 41971393 41972355
TU399771 False 668 lncRNA 0.43 2 41971393 41972355
TU399768 False 480 lncRNA 0.40 2 42031341 42031934
TU399769 True 366 lncRNA 0.40 3 42031341 42031934

Neighbor

gene id symbol gene type direction distance location
LOC110522644 ptk2b coding upstream 36813 41884265 ~ 41934580 (+)
LOC110522643 LOC106608291 coding upstream 289447 41676261 ~ 41681946 (+)
LOC110522642 LOC106608292 coding upstream 295713 41664602 ~ 41675680 (+)
LOC110522641 LOC106608294 coding upstream 319967 41648792 ~ 41651426 (+)
LOC110522636 LOC106608297 coding upstream 526125 41426880 ~ 41445268 (+)
LOC118964483 NA coding downstream 287467 42319401 ~ 42328637 (+)
eif2b4 LOC106608321 coding downstream 297808 42329742 ~ 42364354 (+)
LOC110522651 LOC106608319 coding downstream 338886 42370820 ~ 42433129 (+)
si:ch211-278j3.3 LOC106608328 coding downstream 428424 42460358 ~ 42514461 (+)
si:dkey-71h2.2 LOC104922452 coding downstream 489852 42521786 ~ 42630516 (+)
G352988 NA non-coding upstream 4552 41966642 ~ 41966841 (+)
G352986 NA non-coding upstream 16295 41954758 ~ 41955098 (+)
G352985 NA non-coding upstream 21755 41949432 ~ 41949638 (+)
G352982 NA non-coding upstream 26669 41944522 ~ 41944724 (+)
G352981 NA non-coding upstream 28593 41942545 ~ 41942800 (+)
G353015 NA non-coding downstream 25008 42056942 ~ 42057601 (+)
G353122 NA non-coding downstream 86163 42118097 ~ 42119525 (+)
G353123 NA non-coding downstream 86459 42118393 ~ 42119155 (+)
G353127 NA non-coding downstream 96487 42128421 ~ 42129610 (+)
G353138 NA non-coding downstream 113312 42145246 ~ 42173670 (+)
G352477 NA other upstream 604786 41366201 ~ 41366607 (+)
G352341 NA other upstream 757444 41211113 ~ 41214206 (+)
G352340 NA other upstream 760395 41210247 ~ 41210998 (+)
G352136 LOC106608303 other upstream 980888 40990159 ~ 40990505 (+)
G351441 NA other upstream 1834620 40134687 ~ 40136773 (+)
G353125 NA other downstream 92742 42124676 ~ 42125759 (+)
G353328 LOC106608329 other downstream 410821 42442755 ~ 42443381 (+)
G353339 NA other downstream 419098 42451032 ~ 42451409 (+)
G353820 NA other downstream 878952 42910886 ~ 42912213 (+)

Expression


Co-expression Network