G353293


Basic Information

Item Value
gene id G353293
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 42367755 ~ 42370650 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU400132
GTCATAATAAGTATTATTATATTGTACTTACAGGTTAGCCAACTGGATAAAGCCTTCAAACAGTGAATCGTCCAGATTTACAATGGGGTTCAGTGAGAGATCTCTGCAAAGTCAAGAGAGAAATCAGAAGTTAACGCAGCACATAGTAACACACTAGTAATGTAGGTCAATGTGAACGGTCTGTTTTTCCATACATTGTTGTAGCGCTGAATGCATCTTGAAGGTCTTCCACACGGCTCAGGGAACAGTTTGATAGGTCCAACCTGAGGGAAACGTAAAGAGTGTGACTAATACATGTTGATAAGGGCACAgacagtaaaacaaaacaaaaaactatGACAGATACTGGCTACAAGACAAGTCATCAGTTGGTacattttcaaaaaatatatatatttgacctttatttatacTGGGTTTTCCTCATTGAGAGAACATCTCTTTTCCAATAGTTGTTGGTCGTTACTAAATGTTATTACACAAAGTATTTGTCCTCTATGAGCAATTCAGTAGGACCGCCAGATTATCAACTGCGAAAGGTTAACAAAACAAATGCTTTTCAAAGCACAAAATCTAATTCCTACCCGATGACGTAGTCCGCATCCCTGATGTTCTCTTTTCTCAGCAGGCAGCAGCGGCCATCAATCAAACCCGTAGACGCGGAACAGAACTGGCTCACGGCCGTGCCGTTCTGGACCGTCCCGTTGCAGAGATGGCACAGGcccacctgttgttgttgttgttgttgttgtggaccACAAATACACAACACGGAGCTATTCACAACGCCTTTATCAACAAGACTGTAGCCTAGCAACAATAGCTTTCTACAACAAATgcttcaaaaaatatatatattttacagacaACTAGCGACacaatctaattgtatttgtcacatacgccgaatacaatgcagtgaaatgtttacttacaagcccttaaccaacaatgcagtgcaATCTCAGTGAGTGTGTAGCATGCAGGCCAGCAGAAGACAGTTACAATGTAACAACGCCGAGTGTAGCCAAGTAGCGTAGCAGTTACAATGTAACAACGCTGAGTGTAGCCAAGTAGCGTAGCAGTTACAATGCAACAACGCTGAGTGTAGCCAAGTAGCGTAGCAGTTACAATGTAACAACGCTGATTGTAGCCAAGTAGCGTAGCAGTTACAATGTAACAACGCCGAGTGTAGCCAAGTAGCGTAGCAGTTACAATGTAACAACGCCGAGTGTAGCCAAGTAGCGTAGCAGTTACAATGTAACAACGCCGAGTGTAGCCAAGTAGCGTAGCAGTTACAATGTAACAACGCCGAGTGTAGCCAAGTAGAGGTAGCAGTTACAATGTAACAACGCTGAGTGTAGCCAAGTAGCGTAGCAGTTACAATGTAACAACGCTGAGTGTAGCCAAGTAGCGTAGCAGTTACAATGTAACAACGCCGAGTGTAGCCAAGTAGCGTAGCAGTTACAATGTAACAACGCTGAGTGTAGCCAAGTAGCGTAGCAGTTACAATGTAACAACGCTGAGTGTAGCCAAGTAGCGTAGCAGTTACAATGTAACAACGCTGAGTGTAGCCAAGTAGCGTAGCAGTTACAATGTAACAACGCCGAGTGTAGCCAAGTAGCGTAGCAGTTACAATGTAACAACGCAGTGTAGCAGCATAATTACAATGTAACACATCCGAGTGTATAAACAACGTAACAATTCTACTCTGAGTATAGAAGCAGTTAcaatgtaacaacaacaacaacgagtGTAGCCTAGCATCAGCAGTAACAATTTAACGGATCTGATATGACACCGAACAGCATTGCCTATAGACCTGAAGCAGACCCTTTACCTGTAACTCAGTCAGTTGATAACCACCAGAGAAACATACATGAATGAACAACAAGACCACTGCTGCATTCTGCTGGCCGTGTCCAGCGGTCATTTTCGACGGCGCAAGTCACATGACCGGAACGTATAGGCATGTGACTGTAAGCGAGTGAATCACGGCCGCGTCCCCGATAGTCCTCGTCTCCTTGCCTCGTTTCCTTTTCACCCTTGATTAGTCCTCGATTTGAATAGATTAAAAAAAACACTATGGTAGAGTGATATAGTAAATGCCGTTCAGAAAGATCGTATATTTTTGCTTATAGATCTATTACTCTTTCTGTTCACATTAATGATCATTAAGAGACAGAGAATATAAAAGGACACCAAGAAGTGTTTGAACGCAGACAGTGCATCGTGACCGTACAATTTGCGCAACATTTTTTGCATACCTAAAATGCAGCCTATAGATTGAAgattttgtatttaacctttatctaactaggcaagtcagttaagaacaaattcttatttaaaatgacggcctaccggggaacagtgagttaactgccttgttcaggggcagaacgccaGACTgttgccttgtcagctcgggaattcaaaatagcaatctttcggttacccCAACGCTAttaccactagactacctgcagcACCATGCATCTCAAAGAAATAGCCTATTAGACTGTAGTAGTCTATTAAATATGTTGTATTATTAATTGCCTACATTTATTTGTTCCCTGCCTTACAAGACAAACAAATATGCACAGGTTTACATGGCCAAAATAGCACATTTTGGAAATAAAACATAAATCATTTACAATTTTTATAATGCTGTTAAGAAAAACAATTCAATTGGTTTGGAAGTTGTCTGGACTGCTCAAAAGCACGGTCATCTGACCATCCCGACTCTCAGGAAAGCACCATCACAGAACAGGGGTCAGAATACAAGAGGAGATCATTTAcctaaaaaaa

Function

NR:

description
all-trans retinoic acid-induced differentiation factor-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU400132 True 2811 lncRNA 0.42 2 42367755 42370650

Neighbor

gene id symbol gene type direction distance location
eif2b4 LOC106608321 coding upstream 3401 42329742 ~ 42364354 (+)
LOC118964483 NA coding upstream 40774 42319401 ~ 42328637 (+)
LOC110522644 ptk2b coding upstream 433175 41884265 ~ 41934580 (+)
LOC110522643 LOC106608291 coding upstream 685809 41676261 ~ 41681946 (+)
LOC110522642 LOC106608292 coding upstream 692075 41664602 ~ 41675680 (+)
LOC110522651 LOC106608319 coding downstream 170 42370820 ~ 42433129 (+)
si:ch211-278j3.3 LOC106608328 coding downstream 89708 42460358 ~ 42514461 (+)
si:dkey-71h2.2 LOC104922452 coding downstream 151136 42521786 ~ 42630516 (+)
sh3bgrl2 LOC106608335 coding downstream 883242 43253892 ~ 43279017 (+)
rps12 rps12 coding downstream 916002 43286652 ~ 43291268 (+)
G353284 NA non-coding upstream 32389 42333636 ~ 42335366 (+)
G353257 NA non-coding upstream 78026 42288775 ~ 42289729 (+)
G353255 NA non-coding upstream 82224 42284853 ~ 42285531 (+)
G353247 NA non-coding upstream 118077 42248574 ~ 42249678 (+)
G353246 NA non-coding upstream 119935 42247531 ~ 42247820 (+)
G353312 NA non-coding downstream 9516 42380166 ~ 42380846 (+)
G353315 NA non-coding downstream 17316 42387966 ~ 42389462 (+)
G353318 NA non-coding downstream 32673 42403323 ~ 42404961 (+)
G353329 NA non-coding downstream 52105 42422755 ~ 42425412 (+)
G353334 LOC106608329 non-coding downstream 73124 42443774 ~ 42444339 (+)
G353125 NA other upstream 241996 42124676 ~ 42125759 (+)
G352477 NA other upstream 1001148 41366201 ~ 41366607 (+)
G352341 NA other upstream 1153806 41211113 ~ 41214206 (+)
G352340 NA other upstream 1156757 41210247 ~ 41210998 (+)
G353328 LOC106608329 other downstream 72105 42442755 ~ 42443381 (+)
G353339 NA other downstream 80382 42451032 ~ 42451409 (+)
G353820 NA other downstream 540236 42910886 ~ 42912213 (+)
G354462 NA other downstream 1240312 43610962 ~ 43611562 (+)

Expression


Co-expression Network