G353343


Basic Information

Item Value
gene id G353343
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 42454941 ~ 42455543 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU400191
TACAtcgcctgggtaccagtctgtttgtgctataaGAATGAAAGTTTGATCCCTTACACTTGACAGATTGAGGATTCTGTTGTTTTCTTCTTGGCATCTTCCGGGCAGCCTCTCTCTTTTGAAACCTCTTCTGGAACACCTCGGGCACTATCAGCTCATGCTGCTTTCCAGGAAACGGTGCTTCTCCAGTAGTTCTAGacacaaaaaaaaacttttttaaaaGATTGATAAATATCAATCAGATATGCCAAAGCATTTAAGCAATTCAGGCACAATTGAACCTAGCTACATCTCTACATAGCTCGGGTAAAGgcacagctaactagctagcaactgCGTGACACAGACCTAGGTAACAGCTGTACATCCATGATTAAAATGCCTTGTTAACATTAGAGATAACCATAGCAAGCCATTTGGCTGAGTAAAGGGATGCGGTCAGATCAAATTGCTCTGTCCGGTGGATGTTGTTGCAGCTTGCTCAAGGCCCTTAATGATTCTTTGTAGACAGCTAACTATCTAATTATGTTAACTATCTAGCTAATAATGTTAACATCAATGACTACACGTAACGTTACCAGGCTAATTTGAATGAAAGGCTAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU400191 True 603 lncRNA 0.41 1 42454941 42455543

Neighbor

gene id symbol gene type direction distance location
LOC110522651 LOC106608319 coding upstream 21812 42370820 ~ 42433129 (+)
eif2b4 LOC106608321 coding upstream 90587 42329742 ~ 42364354 (+)
LOC118964483 NA coding upstream 127960 42319401 ~ 42328637 (+)
LOC110522644 ptk2b coding upstream 520361 41884265 ~ 41934580 (+)
LOC110522643 LOC106608291 coding upstream 772995 41676261 ~ 41681946 (+)
si:ch211-278j3.3 LOC106608328 coding downstream 4815 42460358 ~ 42514461 (+)
si:dkey-71h2.2 LOC104922452 coding downstream 66243 42521786 ~ 42630516 (+)
sh3bgrl2 LOC106608335 coding downstream 798349 43253892 ~ 43279017 (+)
rps12 rps12 coding downstream 831109 43286652 ~ 43291268 (+)
LOC118964509 NA coding downstream 831639 43287182 ~ 43287259 (+)
G353340 NA non-coding upstream 2876 42451815 ~ 42452065 (+)
G353337 NA non-coding upstream 6846 42447862 ~ 42448095 (+)
G353336 NA non-coding upstream 8753 42445963 ~ 42446188 (+)
G353334 LOC106608329 non-coding upstream 10602 42443774 ~ 42444339 (+)
G353329 NA non-coding upstream 29529 42422755 ~ 42425412 (+)
G353295 NA non-coding downstream 152 42455695 ~ 42457805 (+)
G353299 NA non-coding downstream 17993 42473536 ~ 42473985 (+)
G353348 NA non-coding downstream 30953 42486496 ~ 42486736 (+)
G353303 NA non-coding downstream 39007 42494550 ~ 42495193 (+)
G353339 NA other upstream 3532 42451032 ~ 42451409 (+)
G353328 LOC106608329 other upstream 11560 42442755 ~ 42443381 (+)
G353125 NA other upstream 329182 42124676 ~ 42125759 (+)
G352477 NA other upstream 1088334 41366201 ~ 41366607 (+)
G353820 NA other downstream 455343 42910886 ~ 42912213 (+)
G354462 NA other downstream 1155419 43610962 ~ 43611562 (+)
G354630 NA other downstream 1534580 43990123 ~ 43990639 (+)
myb myb other downstream 1653536 44084616 ~ 44110268 (+)

Expression


Co-expression Network