G353398


Basic Information

Item Value
gene id G353398
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 42632283 ~ 42633512 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU400266
tataggaagacaacaccaccacccctagaggaagacaccaccacaaccctcctagaggaagacaccaccaccacccctagaggaagacaccaccccccctagaggaagacaacaccgccaccacccctagaggaagacaccaccacccctagaggaagacaccaccaccaccaccaccacccctagaggaagacaacaccaccaccacccctagaggaagacaccacccccctagaggaagacaccaccacccctagaggaagacaccacccccctagaggaagacaccaccccccctagaggaagacaccaccaccaccacccctagaggaagacaacaccaccaccaccactagaggaagacaccaccacccctagaggaagacaccaccaccaccaccaccacccctagaggaagacaacaccaccaccacccctagaggaagacaacaccaccaccacccctagaggaagacaccaccccccctagaggaagacaccaccaccacccccctagAGGAAGACACCACCAACACCCCCCCTAGAGgaagacaacaccaccaccacccctataggaagacaacaccaccaccacccgcaGAGGAAGACACCACCCCCCTAGAAGAAGACACCACCCCCCCTAGAggaagacaccaccaccaccacccctagaggaagacaccaacaccaccccccctagaggaagacaccaccaccaccacccctagaggaagacaacaccaccaccaccacccctataggaagacaacaccaccaccacccgcaGAGGAAGACACCACCCCCCTAGAAGAAGACACCACCCCCCCTAGAGGAAGACACCACCACCCCTAGAGGAAGACACCACCCCCCTAGAAAAAGACACCACCCCCCTAGAggaagacaccaccaccaccacccctagaggaatacaacaccaccacccccccctataggaagacaacaccaccacccctagaggaagacaccaccacaaccctcctagaggaagacaccaccaccacccctagaggaagacaccaccaccacccctcctagAGGAAGACCATCCtctcactatatagggaatagtagagTGAGGTGCAGCTATTGTATTGATATCTCATTAGTCTACCACCAGCAGTCTGCCTCCAGCAGTCTGCCACAGTAGTCTGCCACAGTAGTCTGCCTCCAGCAGTCTGCCACCAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU400266 True 1208 lncRNA 0.58 2 42632283 42633512

Neighbor

gene id symbol gene type direction distance location
si:dkey-71h2.2 LOC104922452 coding upstream 1767 42521786 ~ 42630516 (+)
si:ch211-278j3.3 LOC106608328 coding upstream 117822 42460358 ~ 42514461 (+)
LOC110522651 LOC106608319 coding upstream 199154 42370820 ~ 42433129 (+)
eif2b4 LOC106608321 coding upstream 267929 42329742 ~ 42364354 (+)
LOC118964483 NA coding upstream 305302 42319401 ~ 42328637 (+)
sh3bgrl2 LOC106608335 coding downstream 620380 43253892 ~ 43279017 (+)
rps12 rps12 coding downstream 653140 43286652 ~ 43291268 (+)
LOC118964509 NA coding downstream 653670 43287182 ~ 43287259 (+)
tbpl1 tbpl1 coding downstream 1070507 43704019 ~ 43722541 (+)
slc2a12 slc2a12 coding downstream 1106751 43740263 ~ 43768983 (+)
G353375 NA non-coding upstream 60161 42571675 ~ 42572122 (+)
G353355 NA non-coding upstream 110966 42521118 ~ 42521317 (+)
G353308 NA non-coding upstream 128169 42502757 ~ 42504114 (+)
G353303 NA non-coding upstream 137090 42494550 ~ 42495193 (+)
G353348 NA non-coding upstream 145547 42486496 ~ 42486736 (+)
G353399 NA non-coding downstream 1120 42634632 ~ 42642233 (+)
G353412 NA non-coding downstream 44632 42678144 ~ 42681176 (+)
G353438 NA non-coding downstream 106595 42740107 ~ 42740453 (+)
G353441 NA non-coding downstream 114948 42748460 ~ 42749514 (+)
G353752 LOC106608341 non-coding downstream 163103 42796615 ~ 42823273 (+)
G353339 NA other upstream 180874 42451032 ~ 42451409 (+)
G353328 LOC106608329 other upstream 188902 42442755 ~ 42443381 (+)
G353125 NA other upstream 506524 42124676 ~ 42125759 (+)
G352477 NA other upstream 1265676 41366201 ~ 41366607 (+)
G353820 NA other downstream 277374 42910886 ~ 42912213 (+)
G354462 NA other downstream 977450 43610962 ~ 43611562 (+)
G354630 NA other downstream 1356611 43990123 ~ 43990639 (+)
myb myb other downstream 1475567 44084616 ~ 44110268 (+)

Expression


Co-expression Network