G353780


Basic Information

Item Value
gene id G353780
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 42846411 ~ 42848874 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU400729
GGGAAACATACAATAACTGAATTTGATACAAACGCTTTACAaactatattatatttatattttaaaatatatagatatgtattgtgCCACTTGGTTTCTGATATCCGGTAGGTGCCGTGCCTTTTGGCTTTTCTACAATGGGAGAATCTTGGACTCAGGGTGGTGTTGCTTCTCTAGGTTTTTCTTAATATCTATCATGGACTCAGGGTGTTGTTGCTTCTCTAGGTTTTTCTTAATATCTATCATGGACTCAGGGTGTTGTTGCTTCTCTAGGTATAACTTCTATTTGACGCTGGTGTTCAGTCTTGTGCAGTGAATGAATGGAAAATGGTGGTTTAAGAACCTTTCACTGATGTTAAATCAGAAGCATCTATGTTTTCAGTTTGTAGAACGCATCCAATGTGTGTATTTAATAGGTTTACACCTAAAGTGGCAATATATTATTTTAACCATAGAGTTATTCATGTCAGGGAGAATTGACaaagatcatcatcatcatcaagatAATCAAGTTAAACGGTCAACATTCTGGAATGGAGATGAAGTGACAAAAACAATCTGTGGGTCAACAACCTGTTTCcactaaaaatacaaataaaagtgATTGTAGTTTAAATGATTAAGTATTGTAGACTATCATCAAAGTGTCTGTTAAAATATTAGGTGCAATTCCATCTCGTAAAATACATATTATCCCAAACACATGATGTTCATTTGATCATTTAAAGCCAGAGCAATCTGATTAAAATAAAACTTTAATTTAGATTAACTACATACAGTCAGCTAAAGACATATATTATTTctttcatacatacatacatacatatatacatactgtacatacatacatacatacatactgtacatacatacatacatacatacatacatacatacatacatacatacatacatactgtacatacatacatacatacatacatacatacatactgtacatacatacatacatacatacatactgtacataaatacatttggaaTGTATAGCTTCACGCTACATGATATGTGTTCAAAGTCATAGACAGGCAACAAAGATTGTTgcaaaaaaataattatatatatatatatatatataatcctgaAGTAtctacaaaatatatttattgtgCTTGAGGTACTTCCTATTGCATTCAGGTTTCACATAGacagtacataatatatatatatatataactatttCTCCATTTGCAGTTAATTACGAGTAGCTCCTTAGGGCCAAGGCTTTTAATAGTGGGGTagaataaaaacatttatttgaacAATTCATTATTCTATTCATTACAATTATAGTTGATTAGTGCACTAAATAAAACCACTCAAacgtaaactcagcaacaaaaaaaaagtaaataattgTATGAACAgatcaagattcaacaactgaaacataaactgagcaagttccacagacatgtgtctaacagaaatttaataatgtgtccctgaacaaaggggggggggggggggtcaaaagtaatagttagtatgtggtgtggccaccagctgcattaggtactgcagtgtatctcctccttatgga
>TU400732
GGGAAACATACAATAACTGAATTTGATACAAACGCTTTACAaactatattatatttatattttaaaatatatagatatgtattgtgCCACTTGGTTTCTGATATCCGGTAGGTGCCGTGCCTTTTGGCTTTTCTACAATGGGAGAATCTTGGACTCAGGGTGGTGTTGCTTCTCTAGGTTTTTCTTAATATCTATCATGGACTCAGGGTGTTGTTGCTTCTCTAGGTTTTTCTTAATATCTATCATGGACTCAGGGTGGTGTTGCTTCTCTAGGTTTTTTAATATCTATCATGGACTCAGGGTGTTGTTGCTTCTCTAGGTATAACTTCTATTTGACGCTGGTGTTCAGTCTTGTGCAGTGAATGAATGGAAAATGGTGGTTTAAGAACCTTTCACTGATGTTAAATCAGAAGCATCTATGTTTTCAGTTTGTAGAACGCATCCAATGTGTGTATTTAATAGGTTTACACCTAAAGTGGCAATATATTATTTTAACCATAGAGTTATTCATGTCAGGGAGAATTGACaaagatcatcatcatcatcaagatAATCAAGTTAAACGGTCAACATTCTGGAATGGAGATGAAGTGACAAAAACAATCTGTGGGTCAACAACCTGTTTCcactaaaaatacaaataaaagtgATTGTAGTTTAAATGATTAAGTATTGTAGACTATCATCAAAGTGTCTGTTAAAATATTAGGTGCAATTCCATCTCGTAAAATACATATTATCCCAAACACATGATGTTCATTTGATCATTTAAAGCCAGAGCAATCTGATTAAAATAAAACTTTAATTTAGATTAACTACATACAGTCAGCTAAAGACATATATTATTTctttcatacatacatacatacatatatacatactgtacatacatacatacatacatactgtacatacatacatacatacatacatacatacatacatacatacatacatactgtacatacatacatttggaaTGTATAGCTTCACGCTACATGATATGTGTTCAAAGTCATAGACAGGCAACAAAGATTGTTgcaaaaaaataattatatatatatatatatatataatcctgaAGTAtctacaaaatatatttattgtgCTTGAGGTACTTCCTATTGCATTCAGGTTTCACATAGacagtacataatatatatatatatataactatttCTCCATTTGCAGTTAATTACGAGTAGCTCCTTAGGGCCAAGGCTTTTAATAGTGGGGTagaataaaaacatttatttgaacAATTCATTATTCTATTCATTACAATTATAGTTGATTAGTGCACTAAATAAAACCACTCAAacgtaaactcagcaacaaaaaaaaagtaaataattgTATGAACAgatcaagattcaacaactgaaacataaactgagcaagttccacagacatgtgtctaacagaaatttaataatgtgtccctgaacaaaggggggggggggggggtcaaaagtaatagttagtatgtggtgtggccaccagctgcattaggtactgcagtgtatctcctccttatgga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU400729 False 1564 lncRNA 0.32 3 42846411 42848874
TU400732 True 1540 lncRNA 0.33 4 42846411 42848874

Neighbor

gene id symbol gene type direction distance location
si:dkey-71h2.2 LOC104922452 coding upstream 215895 42521786 ~ 42630516 (+)
si:ch211-278j3.3 LOC106608328 coding upstream 331950 42460358 ~ 42514461 (+)
LOC110522651 LOC106608319 coding upstream 413282 42370820 ~ 42433129 (+)
eif2b4 LOC106608321 coding upstream 482057 42329742 ~ 42364354 (+)
LOC118964483 NA coding upstream 519430 42319401 ~ 42328637 (+)
sh3bgrl2 LOC106608335 coding downstream 405018 43253892 ~ 43279017 (+)
rps12 rps12 coding downstream 437778 43286652 ~ 43291268 (+)
LOC118964509 NA coding downstream 438308 43287182 ~ 43287259 (+)
tbpl1 tbpl1 coding downstream 855145 43704019 ~ 43722541 (+)
slc2a12 slc2a12 coding downstream 891389 43740263 ~ 43768983 (+)
G353752 LOC106608341 non-coding upstream 23138 42796615 ~ 42823273 (+)
G353441 NA non-coding upstream 96897 42748460 ~ 42749514 (+)
G353438 NA non-coding upstream 105958 42740107 ~ 42740453 (+)
G353412 NA non-coding upstream 165235 42678144 ~ 42681176 (+)
G353399 NA non-coding upstream 204178 42634632 ~ 42642233 (+)
G353799 NA non-coding downstream 26371 42875245 ~ 42875796 (+)
G353803 NA non-coding downstream 33558 42882432 ~ 42882723 (+)
G353809 NA non-coding downstream 43927 42892801 ~ 42893205 (+)
G353814 NA non-coding downstream 59160 42908034 ~ 42909056 (+)
G353818 NA non-coding downstream 61002 42909876 ~ 42910184 (+)
G353339 NA other upstream 395002 42451032 ~ 42451409 (+)
G353328 LOC106608329 other upstream 403030 42442755 ~ 42443381 (+)
G353125 NA other upstream 720652 42124676 ~ 42125759 (+)
G352477 NA other upstream 1479804 41366201 ~ 41366607 (+)
G353820 NA other downstream 62012 42910886 ~ 42912213 (+)
G354462 NA other downstream 762088 43610962 ~ 43611562 (+)
G354630 NA other downstream 1141249 43990123 ~ 43990639 (+)
myb myb other downstream 1260205 44084616 ~ 44110268 (+)

Expression


Co-expression Network