G353820


Basic Information

Item Value
gene id G353820
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 42910886 ~ 42912213 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU400784
GTCAGAAACAGTCAATGATGCAgatttatttgtttattaattTCACTGTACAACTACAGTTTATAAAGAAGAGggtggggggaagagagaaaaagatggatagacagagggaggagaaagagggacagagagagggagagagagagggaggagaaagagggacagagagagagagagagagagggagagagagagggaggagaaagagggacagagagagggagagagagagggaggagaaagagggacagagagagggagagagagagggagagagagagggaggagaaagagggacagagagagggaggagaaagagggacagagagaaagagaaagagagagagagagaggaggaaaaaacagagagagaggggaccgaGTAACAACGAGGCTTCAGGCTTCTTGCCTGGGGCCCAGCATAGTCCGAGCAGGCATTGGTGACGCACTCCTATCAACATCACAGACCAAATAATATTACCAGTAAACAGTTTTCCTCTTGGTTACGACTTGGCAGCAAAAGAAAAACAATGCTGAGATAATTTCATAATTCACaatgctgttttttttgttgttgccctcAATGAAATAAAATGCTTAATATAAGCAAACAGTTGTCTTTTGAAAAGTCGacgtctttctctccttctttcttaattagaatataatatttttaataccagtcaaaagtttggacacaaagtttttctttattttgactattttctacattgtagaataatagtgaagacatcaaaatgatgacatAACACGTACCTtcatgaccttcatgtcttaaagtaaagatggactgtcgtttgtctttgcttatttgagctgttcttgccataatatggacttggtcttttaccaaatcttctgtataccactcctaccttgtcacaacacaactaattggctcaaacgcattaagaaggaaaagaATTCCACCATTTTTtactttgaacaaggcacacctgttaattgaaatgcattccaggtgactacctcatttaaaaaatgttttatttatttcacctttatttaaccaggtaggctagttgagaacaagttctcatttgcaactgcgacctctggccaagataaagcaaagcagttcgacacatacaacaacacagagttacacatggagtaaacaagacGCCccactcatgaagctggttgagagaatgccaagagtgtgtaaagctgtcatcaaggcaaagggtggctactttgaagaatctcaaatataaaat
>TU400786
cgtttgtctttgcttatttgagctgttcttgccataatatggacttggtcttttaccaaatcttctgtataccactcctaccttgtcacaacacaactaattggctcaaacgcattaagaaggaaaagaATTCCACCATTTTTtactttgaacaaggcacacctgttaattgaaatgcattccaggtgactacctcatttaaaaaatgttttatttatttcacctttatttaaccaggtaggctagttgagaacaagttctcatttgcaactgcgacctctggccaagataaagcaaagcagttcgacacatacaacaacacagagttacacatggagtaaacaagacGCCccactcatgaagctggttgagagaatgccaagagtgtgtaaagctgtcatcaaggcaaagggtggctactttgaagaatctcaaatataaaatatattttcatttgtttaacactttgttgggttacta

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU400784 False 1259 TUCP 0.41 2 42910886 42912177
TU400786 True 480 lncRNA 0.38 2 42911701 42912213
Loading

Neighbor

gene id symbol gene type direction distance location
si:dkey-71h2.2 LOC104922452 coding upstream 281185 42521786 ~ 42630516 (+)
si:ch211-278j3.3 LOC106608328 coding upstream 397240 42460358 ~ 42514461 (+)
LOC110522651 LOC106608319 coding upstream 478572 42370820 ~ 42433129 (+)
eif2b4 LOC106608321 coding upstream 547347 42329742 ~ 42364354 (+)
LOC118964483 NA coding upstream 584720 42319401 ~ 42328637 (+)
sh3bgrl2 LOC106608335 coding downstream 341679 43253892 ~ 43279017 (+)
rps12 rps12 coding downstream 374439 43286652 ~ 43291268 (+)
LOC118964509 NA coding downstream 374969 43287182 ~ 43287259 (+)
tbpl1 tbpl1 coding downstream 791806 43704019 ~ 43722541 (+)
slc2a12 slc2a12 coding downstream 828050 43740263 ~ 43768983 (+)
G353819 NA non-coding upstream 863 42910560 ~ 42910838 (+)
G353818 NA non-coding upstream 1517 42909876 ~ 42910184 (+)
G353814 NA non-coding upstream 2645 42908034 ~ 42909056 (+)
G353809 NA non-coding upstream 18496 42892801 ~ 42893205 (+)
G353803 NA non-coding upstream 28978 42882432 ~ 42882723 (+)
G353828 NA non-coding downstream 11029 42923242 ~ 42923550 (+)
G353829 NA non-coding downstream 17920 42930133 ~ 42930381 (+)
G353830 NA non-coding downstream 18184 42930397 ~ 42930658 (+)
G353831 NA non-coding downstream 18665 42930878 ~ 42931492 (+)
G353832 NA non-coding downstream 19562 42931775 ~ 42932127 (+)
G353339 NA other upstream 460292 42451032 ~ 42451409 (+)
G353328 LOC106608329 other upstream 468320 42442755 ~ 42443381 (+)
G353125 NA other upstream 785942 42124676 ~ 42125759 (+)
G352477 NA other upstream 1545094 41366201 ~ 41366607 (+)
G354462 NA other downstream 698749 43610962 ~ 43611562 (+)
G354630 NA other downstream 1077910 43990123 ~ 43990639 (+)
myb myb other downstream 1196866 44084616 ~ 44110268 (+)
G354819 NA other downstream 1547480 44459693 ~ 44461991 (+)

Expression

G353820 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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G353820 Expression in each Bioproject

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G353820 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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Co-expression Network