G353828


Basic Information

Item Value
gene id G353828
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 42923242 ~ 42923550 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU400800
TCATTGACCAAAAAGCTTGAATTTTTCTCCAGTTTTTTTTCCAACCTGGCAAAAACAAGAGCAGCCAAATTACATTCATAATATCCCGTTTAGCAATCTGCTCCGGGACGCATCTTTGCCAGAACAATAGGCTCCCTGGTGAATTCATTGATAATTTTCATGTTTCAGACAGGCCTAGTTCGGGTGGGATATAATTACATACAGTAGGTTCTACGTCAACGGTGGGTCCTGGCTATACTCTATGTCTTACAGCTGTTGCATTCCACTACCTTCAATAGTGGAATGTTTATTTCATTTTCCTAGTtagat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU400800 True 309 lncRNA 0.40 1 42923242 42923550

Neighbor

gene id symbol gene type direction distance location
si:dkey-71h2.2 LOC104922452 coding upstream 292726 42521786 ~ 42630516 (+)
si:ch211-278j3.3 LOC106608328 coding upstream 408781 42460358 ~ 42514461 (+)
LOC110522651 LOC106608319 coding upstream 490113 42370820 ~ 42433129 (+)
eif2b4 LOC106608321 coding upstream 558888 42329742 ~ 42364354 (+)
LOC118964483 NA coding upstream 596261 42319401 ~ 42328637 (+)
sh3bgrl2 LOC106608335 coding downstream 330342 43253892 ~ 43279017 (+)
rps12 rps12 coding downstream 363102 43286652 ~ 43291268 (+)
LOC118964509 NA coding downstream 363632 43287182 ~ 43287259 (+)
tbpl1 tbpl1 coding downstream 780469 43704019 ~ 43722541 (+)
slc2a12 slc2a12 coding downstream 816713 43740263 ~ 43768983 (+)
G353820 NA non-coding upstream 11029 42910886 ~ 42912213 (+)
G353819 NA non-coding upstream 12404 42910560 ~ 42910838 (+)
G353818 NA non-coding upstream 13058 42909876 ~ 42910184 (+)
G353814 NA non-coding upstream 14186 42908034 ~ 42909056 (+)
G353809 NA non-coding upstream 30037 42892801 ~ 42893205 (+)
G353829 NA non-coding downstream 6583 42930133 ~ 42930381 (+)
G353830 NA non-coding downstream 6847 42930397 ~ 42930658 (+)
G353831 NA non-coding downstream 7328 42930878 ~ 42931492 (+)
G353832 NA non-coding downstream 8225 42931775 ~ 42932127 (+)
G353833 NA non-coding downstream 10467 42934017 ~ 42934458 (+)
G353339 NA other upstream 471833 42451032 ~ 42451409 (+)
G353328 LOC106608329 other upstream 479861 42442755 ~ 42443381 (+)
G353125 NA other upstream 797483 42124676 ~ 42125759 (+)
G354462 NA other downstream 687412 43610962 ~ 43611562 (+)
G354630 NA other downstream 1066573 43990123 ~ 43990639 (+)
myb myb other downstream 1185529 44084616 ~ 44110268 (+)
G354819 NA other downstream 1536143 44459693 ~ 44461991 (+)

Expression


Co-expression Network