G353830


Basic Information

Item Value
gene id G353830
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 42930397 ~ 42930658 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU400802
gctgtaagtcgcttggggtatgtctcaatcagttttgcacatcaagagactgacattttttcccattcctccttgcaaaacagctcgagctcagtgaggtttgaTGGACAGCTTttttgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattataacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgtt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU400802 True 262 lncRNA 0.40 1 42930397 42930658

Neighbor

gene id symbol gene type direction distance location
si:dkey-71h2.2 LOC104922452 coding upstream 299881 42521786 ~ 42630516 (+)
si:ch211-278j3.3 LOC106608328 coding upstream 415936 42460358 ~ 42514461 (+)
LOC110522651 LOC106608319 coding upstream 497268 42370820 ~ 42433129 (+)
eif2b4 LOC106608321 coding upstream 566043 42329742 ~ 42364354 (+)
LOC118964483 NA coding upstream 603416 42319401 ~ 42328637 (+)
sh3bgrl2 LOC106608335 coding downstream 323234 43253892 ~ 43279017 (+)
rps12 rps12 coding downstream 355994 43286652 ~ 43291268 (+)
LOC118964509 NA coding downstream 356524 43287182 ~ 43287259 (+)
tbpl1 tbpl1 coding downstream 773361 43704019 ~ 43722541 (+)
slc2a12 slc2a12 coding downstream 809605 43740263 ~ 43768983 (+)
G353829 NA non-coding upstream 16 42930133 ~ 42930381 (+)
G353828 NA non-coding upstream 6847 42923242 ~ 42923550 (+)
G353820 NA non-coding upstream 18184 42910886 ~ 42912213 (+)
G353819 NA non-coding upstream 19559 42910560 ~ 42910838 (+)
G353818 NA non-coding upstream 20213 42909876 ~ 42910184 (+)
G353831 NA non-coding downstream 220 42930878 ~ 42931492 (+)
G353832 NA non-coding downstream 1117 42931775 ~ 42932127 (+)
G353833 NA non-coding downstream 3359 42934017 ~ 42934458 (+)
G353834 NA non-coding downstream 4138 42934796 ~ 42935505 (+)
G353835 pinx1 non-coding downstream 6939 42937597 ~ 42939857 (+)
G353339 NA other upstream 478988 42451032 ~ 42451409 (+)
G353328 LOC106608329 other upstream 487016 42442755 ~ 42443381 (+)
G353125 NA other upstream 804638 42124676 ~ 42125759 (+)
G354462 NA other downstream 680304 43610962 ~ 43611562 (+)
G354630 NA other downstream 1059465 43990123 ~ 43990639 (+)
myb myb other downstream 1178421 44084616 ~ 44110268 (+)
G354819 NA other downstream 1529035 44459693 ~ 44461991 (+)

Expression


Co-expression Network