G353833


Basic Information

Item Value
gene id G353833
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 42934017 ~ 42934458 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU400813
tactacctctgatctggaggacacactgaacagagaacatccctgatcatccctactgcctctgatctggaggactcactaaacagagaacatccctggtcatccctactgcctctgatctggcagactcactaaacagagaacatccctggtcatccctactgcctctgatatggaggactcactaaacagagaacatccctggtcctccctactgcctctgatctggtggactcactaaacagagaacatccctggtcctccctactgcctctgatctggcggactcactaaacagagaacatccctggtcatccctactgcctctgatctggagaactcactaaacagagaacatccctggtcctccctactgcctctgatctggtggactcactaaacagagaacatccctggtcctccctactgcctctgatctggc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU400813 True 442 lncRNA 0.52 1 42934017 42934458

Neighbor

gene id symbol gene type direction distance location
si:dkey-71h2.2 LOC104922452 coding upstream 303501 42521786 ~ 42630516 (+)
si:ch211-278j3.3 LOC106608328 coding upstream 419556 42460358 ~ 42514461 (+)
LOC110522651 LOC106608319 coding upstream 500888 42370820 ~ 42433129 (+)
eif2b4 LOC106608321 coding upstream 569663 42329742 ~ 42364354 (+)
LOC118964483 NA coding upstream 607036 42319401 ~ 42328637 (+)
sh3bgrl2 LOC106608335 coding downstream 319434 43253892 ~ 43279017 (+)
rps12 rps12 coding downstream 352194 43286652 ~ 43291268 (+)
LOC118964509 NA coding downstream 352724 43287182 ~ 43287259 (+)
tbpl1 tbpl1 coding downstream 769561 43704019 ~ 43722541 (+)
slc2a12 slc2a12 coding downstream 805805 43740263 ~ 43768983 (+)
G353832 NA non-coding upstream 1890 42931775 ~ 42932127 (+)
G353831 NA non-coding upstream 2525 42930878 ~ 42931492 (+)
G353830 NA non-coding upstream 3359 42930397 ~ 42930658 (+)
G353829 NA non-coding upstream 3636 42930133 ~ 42930381 (+)
G353828 NA non-coding upstream 10467 42923242 ~ 42923550 (+)
G353834 NA non-coding downstream 338 42934796 ~ 42935505 (+)
G353835 pinx1 non-coding downstream 3139 42937597 ~ 42939857 (+)
G353856 NA non-coding downstream 57676 42992134 ~ 42992656 (+)
G353862 NA non-coding downstream 76869 43011327 ~ 43011792 (+)
G353864 NA non-coding downstream 90870 43025328 ~ 43025859 (+)
G353820 NA other upstream 21840 42910886 ~ 42912213 (+)
G353339 NA other upstream 482608 42451032 ~ 42451409 (+)
G353328 LOC106608329 other upstream 490636 42442755 ~ 42443381 (+)
G353125 NA other upstream 808258 42124676 ~ 42125759 (+)
G354462 NA other downstream 676504 43610962 ~ 43611562 (+)
G354630 NA other downstream 1055665 43990123 ~ 43990639 (+)
myb myb other downstream 1174621 44084616 ~ 44110268 (+)
G354819 NA other downstream 1525235 44459693 ~ 44461991 (+)

Expression


Co-expression Network