G353963


Basic Information

Item Value
gene id G353963
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 43282041 ~ 43283848 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU400991
aaatacaacaggtgtagtagacctcacagtgaaatgctgagtacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgtaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgagtacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgagtacaacaggtgtagtagaccttacagtgaaatgctgagtacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgagtacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgccgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaattctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctgacagtgaaatgctgaatacaacaggtttagacctcacagtgaaatgctgaatacaacaggtgtagtagacctgacagtgaaatgatgaatacaacaggtttagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacattgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagggtaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtaggtagatcttacagtgaaatgctgaatacagcaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctgacagtgaaatgctgaatacaacaggtgtagtagacctcatagtaaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtaggtagacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU400991 True 1504 lncRNA 0.41 3 43282041 43283848

Neighbor

gene id symbol gene type direction distance location
sh3bgrl2 LOC106608335 coding upstream 3726 43253892 ~ 43279017 (+)
si:dkey-71h2.2 LOC104922452 coding upstream 651525 42521786 ~ 42630516 (+)
si:ch211-278j3.3 LOC106608328 coding upstream 767580 42460358 ~ 42514461 (+)
LOC110522651 LOC106608319 coding upstream 848912 42370820 ~ 42433129 (+)
eif2b4 LOC106608321 coding upstream 917687 42329742 ~ 42364354 (+)
rps12 rps12 coding downstream 2804 43286652 ~ 43291268 (+)
LOC118964509 NA coding downstream 3334 43287182 ~ 43287259 (+)
tbpl1 tbpl1 coding downstream 420171 43704019 ~ 43722541 (+)
slc2a12 slc2a12 coding downstream 456415 43740263 ~ 43768983 (+)
myb myb coding downstream 800768 44084616 ~ 44110268 (+)
G353940 NA non-coding upstream 1375 43279806 ~ 43280666 (+)
G353952 NA non-coding upstream 35138 43246663 ~ 43246903 (+)
G353950 NA non-coding upstream 49487 43232135 ~ 43232554 (+)
G353944 NA non-coding upstream 75960 43205564 ~ 43206081 (+)
G353943 NA non-coding upstream 78206 43203419 ~ 43203835 (+)
G353968 NA non-coding downstream 10652 43294500 ~ 43294783 (+)
G353969 NA non-coding downstream 11162 43295010 ~ 43295264 (+)
G353970 NA non-coding downstream 15447 43299295 ~ 43300099 (+)
G353978 NA non-coding downstream 28125 43311973 ~ 43312920 (+)
G353979 NA non-coding downstream 29370 43313218 ~ 43318002 (+)
G353820 NA other upstream 369864 42910886 ~ 42912213 (+)
G353339 NA other upstream 830632 42451032 ~ 42451409 (+)
G353328 LOC106608329 other upstream 838660 42442755 ~ 42443381 (+)
LOC118964483 NA other upstream 953404 42319401 ~ 42328637 (+)
G354462 NA other downstream 327114 43610962 ~ 43611562 (+)
G354630 NA other downstream 706275 43990123 ~ 43990639 (+)
G354819 NA other downstream 1175845 44459693 ~ 44461991 (+)
G355413 NA other downstream 1691188 44975036 ~ 44975829 (+)

Expression


Co-expression Network