G354643


Basic Information

Item Value
gene id G354643
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 44006897 ~ 44041625 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU401843
gagagagagagagagagacagagagagagacagagagagagacagagagagacagagagagagacagagagagagagagagagacagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagacagacagagagagagagagagagagagagacagagagacagagagacagagagagagacagagagagagagagagagagagagagagagagagagagagagagagagagagagagaaagacagagagacagagagacacagagagagagagagagagagagagagacagagagagagagagagagagagagag
>TU401844
gagagagagagagagagacagagagagagacagagagagagacagagagagagagatagagagagagagagacagagagagagagacagagagagagagacagagagagagagagagagacagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagacagacagagagagagagagagagagagagacagagagacagagagacagagagagagacagagagagagagagagagagagagagagagagagagagagagagagagagagagagaaagacagagagacagagagacacagagagagagagagagagagagagagacagagagagagagagagagagagagag
>TU401841
AGACAACAGAACATCCCTCTGCAAAACCAAAGATCGCAAGATGGCTTGATCTTACAAAACTCATCGACACACAGTCACTTTTTCCAacgtaggtggagagagagagagagagagagagagagagagagagagagagagagagagagagagagacagagagagacagagagacagagagacagagagagagacagagagagagagagagagacagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagacagacagagagagagagagagagagagagacagagagacagagagacagagagagagacagagagagagagagagagagagagagagagagagagagagagagagagagagagagaaagacagagagacagagagacacagagagagagagagagagagagagagacagagagagagagagagagagagagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU401843 False 387 lncRNA 0.50 3 44006897 44041625
TU401844 False 423 lncRNA 0.50 3 44006897 44041625
TU401841 True 514 lncRNA 0.49 2 44040655 44041625

Neighbor

gene id symbol gene type direction distance location
slc2a12 slc2a12 coding upstream 237914 43740263 ~ 43768983 (+)
tbpl1 tbpl1 coding upstream 284356 43704019 ~ 43722541 (+)
rps12 rps12 coding upstream 715629 43286652 ~ 43291268 (+)
LOC118964509 NA coding upstream 719638 43287182 ~ 43287259 (+)
sh3bgrl2 LOC106608335 coding upstream 728582 43253892 ~ 43279017 (+)
myb myb coding downstream 42991 44084616 ~ 44110268 (+)
ppp1r14c ppp1r14c coding downstream 267848 44309473 ~ 44336978 (+)
nbas LOC104962557 coding downstream 359691 44401316 ~ 44700404 (+)
LOC118964488 NA coding downstream 894049 44933784 ~ 44937203 (+)
LOC110510408 hmgn3 coding downstream 1692017 45733642 ~ 45752953 (+)
G354641 NA non-coding upstream 1382 44005099 ~ 44005515 (+)
G354635 NA non-coding upstream 9584 43995528 ~ 43997313 (+)
G354629 NA non-coding upstream 13137 43981799 ~ 43993760 (+)
G354615 NA non-coding upstream 59513 43946865 ~ 43947384 (+)
G354605 NA non-coding upstream 77264 43928909 ~ 43929633 (+)
G354656 NA non-coding downstream 144 44041769 ~ 44042054 (+)
G354658 NA non-coding downstream 2068 44043693 ~ 44060346 (+)
G354657 NA non-coding downstream 3854 44045479 ~ 44047607 (+)
G354680 NA non-coding downstream 57732 44099357 ~ 44099644 (+)
G354691 NA non-coding downstream 84207 44125832 ~ 44128163 (+)
G354630 NA other upstream 16258 43990123 ~ 43990639 (+)
G354462 NA other upstream 395335 43610962 ~ 43611562 (+)
G353820 NA other upstream 1094720 42910886 ~ 42912213 (+)
G353339 NA other upstream 1555488 42451032 ~ 42451409 (+)
G354819 NA other downstream 418068 44459693 ~ 44461991 (+)
G355413 NA other downstream 933411 44975036 ~ 44975829 (+)
G355488 NA other downstream 1021988 45063613 ~ 45064026 (+)
G355753 NA other downstream 1578641 45620266 ~ 45624004 (+)

Expression


Co-expression Network