G354680


Basic Information

Item Value
gene id G354680
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 44099357 ~ 44099644 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU401894
tctctctgtctctctctctgtctctctctctgtcgctctctctgtctctctctgtgtctctctctctctgtgtctctctctctctgtctctctctgtgtctctctcaattcaattcaattcaattcaagagctttattggcatgggaaacatgtgttaacattgccaaagcaagtgaggtagacaacatacaaagtgaatatataaagtgaaaaacaacaaaaattaacagtaaacat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU401894 True 238 lncRNA 0.39 2 44099357 44099644

Neighbor

gene id symbol gene type direction distance location
slc2a12 slc2a12 coding upstream 330374 43740263 ~ 43768983 (+)
tbpl1 tbpl1 coding upstream 376816 43704019 ~ 43722541 (+)
rps12 rps12 coding upstream 808089 43286652 ~ 43291268 (+)
LOC118964509 NA coding upstream 812098 43287182 ~ 43287259 (+)
sh3bgrl2 LOC106608335 coding upstream 821042 43253892 ~ 43279017 (+)
ppp1r14c ppp1r14c coding downstream 209829 44309473 ~ 44336978 (+)
nbas LOC104962557 coding downstream 301672 44401316 ~ 44700404 (+)
LOC118964488 NA coding downstream 836030 44933784 ~ 44937203 (+)
LOC110510408 hmgn3 coding downstream 1633998 45733642 ~ 45752953 (+)
LOC110521126 LOC105018054 coding downstream 2447103 46546747 ~ 46575079 (+)
G354658 NA non-coding upstream 39011 44043693 ~ 44060346 (+)
G354657 NA non-coding upstream 51750 44045479 ~ 44047607 (+)
G354656 NA non-coding upstream 57303 44041769 ~ 44042054 (+)
G354643 NA non-coding upstream 57732 44006897 ~ 44041625 (+)
G354641 NA non-coding upstream 93842 44005099 ~ 44005515 (+)
G354691 NA non-coding downstream 26188 44125832 ~ 44128163 (+)
G354711 NA non-coding downstream 73874 44173518 ~ 44175912 (+)
G354722 NA non-coding downstream 89387 44189031 ~ 44189483 (+)
G354716 NA non-coding downstream 90661 44190305 ~ 44191015 (+)
G354725 NA non-coding downstream 103398 44203042 ~ 44203609 (+)
G354630 NA other upstream 108718 43990123 ~ 43990639 (+)
G354462 NA other upstream 487795 43610962 ~ 43611562 (+)
G353820 NA other upstream 1187180 42910886 ~ 42912213 (+)
G353339 NA other upstream 1647948 42451032 ~ 42451409 (+)
myb myb other downstream 9435 44084616 ~ 44110268 (+)
G354819 NA other downstream 360049 44459693 ~ 44461991 (+)
G355413 NA other downstream 875392 44975036 ~ 44975829 (+)
G355488 NA other downstream 963969 45063613 ~ 45064026 (+)
G355753 NA other downstream 1520622 45620266 ~ 45624004 (+)

Expression


Co-expression Network