G354750


Basic Information

Item Value
gene id G354750
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 44251363 ~ 44266753 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU401994
cctctcccagactgggtcatgttgtcctgctgatagtctcctgtcctcctctcccagactgggtcatgttgtcctgctgatagtctcctgtcctcctctcccagactgggtcatgttgtcctggtccttagctgatagtctcctgtcctcctctcccaggctgggtcatgttgtcctgctgatagtctcctgtcctcctctcccagactgggtcatgttgtcctggtccttagctgatagtctcctgtcctcctctcccagactgggtcatgttgtcctgctgatagtctcctgtcctcctctcccagactgggtcatgttgtcctgctgatagtctcctgtcctcctctcccagactgggtcatgttgtcctggtccttagctgatagtctcctgtcctcctctcccagactgggtcatgttgtcctgctgatagtctcctgtcctcctctcccagactgggtcatgttgtcctgctgatagtctcctgtcctcctctcccagactgggtcaagttgtcctgctgatagtctcctgtcctcctctcccagactgggtcatgttgtcctgctgatagtctcctgtcctcgtctcccaggctgggtcatgttgtcctgctgatagtctcctgtcctcctctcccagactgggtcatgttgtcctgctgatagtctcctgtcctcgtctcccaggctgggtcatgttgtcctgctgatagtctcctgtcctcctctcccagactgggtcatgttgtcctgctgatagtctcctgtcctcctctcccagactgggtcatgttgtcctgctgatagtctcctgtcctcctctcccagactgggtcatgttgtcctggtccttagctgatagtctcctgtcctcctctcccagactgggtcatgttgtcctgctgatagtctcctgtcctcctctcccagactgggtcatgttgtcctgctgatagtctcctgtcctcctctcccaggctgggtcatgttgtcctggtccttagctgatagtctcctgtcctcctctcccagactgggtcatgttgtcctggtccttagctaatagtctcctgtcctcctctcccagactgggtcatgttgtcctggtccttagctgatagtctcctgtcctcctctcccagactgggtcatgttgtcctggtccttagctgatagtctcctgtcctcctctcccagactgggtcatgttgtcctgctgatagtctcctgtcctcctctcccagactaggtcatgttgtcctgctgatagtctcctgtcctcctctcccagactgggtcatgatgtcctgctgatagtctcctgtcctcctctcccagactgggtcatgttgtcctgctgatagtctcctgtcctcctctcccagactgggtcaagttgtcctgctgatagtctcctgtcctcctctcccagactgggtcatgttgtcctgctgatagtctcctgtcctcctctcccagactgggtcatgttgtcctggtccttagctgatagtctcctgtcctcctctcccaggctgggtcatgttgtcctggtccttagctgatagtctcctgtcctcctctcccagactgtgtcatgttgtcctgctgatagtctccagtcctcctctcccaggctgggtcatgttgtcctgctgatagtctcctgtcctcctctcacagactgggtcatgttgtcctgctgatagtctcctg

Function

NR:

description
pentatricopeptide repeat-containing protein At1g10270-like, partial

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU401994 True 1721 lncRNA 0.55 2 44251363 44266753

Neighbor

gene id symbol gene type direction distance location
myb myb coding upstream 141095 44084616 ~ 44110268 (+)
slc2a12 slc2a12 coding upstream 482380 43740263 ~ 43768983 (+)
tbpl1 tbpl1 coding upstream 528822 43704019 ~ 43722541 (+)
rps12 rps12 coding upstream 960095 43286652 ~ 43291268 (+)
ppp1r14c ppp1r14c coding downstream 42720 44309473 ~ 44336978 (+)
nbas LOC104962557 coding downstream 134563 44401316 ~ 44700404 (+)
LOC118964488 NA coding downstream 668921 44933784 ~ 44937203 (+)
LOC110510408 hmgn3 coding downstream 1466889 45733642 ~ 45752953 (+)
LOC110521126 LOC105018054 coding downstream 2279994 46546747 ~ 46575079 (+)
G354725 NA non-coding upstream 47754 44203042 ~ 44203609 (+)
G354716 NA non-coding upstream 60348 44190305 ~ 44191015 (+)
G354722 NA non-coding upstream 61880 44189031 ~ 44189483 (+)
G354711 NA non-coding upstream 75451 44173518 ~ 44175912 (+)
G354691 NA non-coding upstream 123200 44125832 ~ 44128163 (+)
G354752 NA non-coding downstream 1535 44268288 ~ 44269650 (+)
G354757 NA non-coding downstream 8894 44275647 ~ 44276272 (+)
G354728 NA non-coding downstream 59152 44325905 ~ 44344882 (+)
G354774 NA non-coding downstream 63752 44330505 ~ 44330963 (+)
G354810 NA non-coding downstream 171380 44438133 ~ 44467906 (+)
G354630 NA other upstream 260724 43990123 ~ 43990639 (+)
G354462 NA other upstream 639801 43610962 ~ 43611562 (+)
sh3bgrl2 LOC106608335 other upstream 972346 43253892 ~ 43279017 (+)
G353820 NA other upstream 1339186 42910886 ~ 42912213 (+)
G354819 NA other downstream 192940 44459693 ~ 44461991 (+)
G355413 NA other downstream 708283 44975036 ~ 44975829 (+)
G355488 NA other downstream 796860 45063613 ~ 45064026 (+)
G355753 NA other downstream 1353513 45620266 ~ 45624004 (+)
G355763 enpp5 other downstream 1422682 45640503 ~ 45698847 (+)

Expression


Co-expression Network