G354842


Basic Information

Item Value
gene id G354842
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 44538600 ~ 44539506 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU402099
taaccattaccttctggtgaagaccctccactatataccttcctcctacagatacccattaccttctggtgtagaccctccactatataccttcctcctataaccattaccttctggtgtagaccctccactatataccttcctcctacagatacccattaccttctggtgtagaccctccactatataccttcctcctacagatacccattaccttctggtgtagaccctccactatataccttcctcctacagataaccattaccttctggtgtagaccctccactatataccttcctcctataaccattaccttctggtgtaaaccctccactatataccttcctcctataaccattaccttctggtgtagaccctccactatataccttcctcctacagataaccattaccttctggtgtagaccctccactatataccttcctcctataaccattaccttctggtgtagaccctccactatataccttcctcctatacccattaccttctggtgtaaaccctccactatatacctccTTCCTACATACCGCCCCCCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU402099 True 563 lncRNA 0.45 2 44538600 44539506

Neighbor

gene id symbol gene type direction distance location
ppp1r14c ppp1r14c coding upstream 201622 44309473 ~ 44336978 (+)
myb myb coding upstream 428332 44084616 ~ 44110268 (+)
slc2a12 slc2a12 coding upstream 769617 43740263 ~ 43768983 (+)
tbpl1 tbpl1 coding upstream 816059 43704019 ~ 43722541 (+)
LOC118964509 NA coding upstream 1251341 43287182 ~ 43287259 (+)
LOC118964488 NA coding downstream 396168 44933784 ~ 44937203 (+)
LOC110510408 hmgn3 coding downstream 1194136 45733642 ~ 45752953 (+)
LOC110521126 LOC105018054 coding downstream 2007241 46546747 ~ 46575079 (+)
mapre3b LOC106591799 coding downstream 2035667 46575173 ~ 46607810 (+)
agbl5 LOC106608376 coding downstream 2155382 46694888 ~ 46745644 (+)
G354841 NA non-coding upstream 272 44537843 ~ 44538328 (+)
G354837 NA non-coding upstream 14226 44523543 ~ 44524374 (+)
G354835 NA non-coding upstream 20175 44518009 ~ 44518425 (+)
G354833 NA non-coding upstream 34435 44503068 ~ 44504165 (+)
G354831 NA non-coding upstream 39970 44497527 ~ 44498630 (+)
G354844 NA non-coding downstream 6423 44545929 ~ 44546302 (+)
G354850 NA non-coding downstream 37375 44576881 ~ 44577456 (+)
G354857 NA non-coding downstream 66571 44606077 ~ 44608682 (+)
G354858 NA non-coding downstream 78391 44617897 ~ 44619579 (+)
G354860 NA non-coding downstream 83704 44623210 ~ 44631036 (+)
G354819 NA other upstream 76609 44459693 ~ 44461991 (+)
G354630 NA other upstream 547961 43990123 ~ 43990639 (+)
G354462 NA other upstream 927038 43610962 ~ 43611562 (+)
sh3bgrl2 LOC106608335 other upstream 1259583 43253892 ~ 43279017 (+)
G355413 NA other downstream 435530 44975036 ~ 44975829 (+)
G355488 NA other downstream 524107 45063613 ~ 45064026 (+)
G355753 NA other downstream 1080760 45620266 ~ 45624004 (+)
G355763 enpp5 other downstream 1149929 45640503 ~ 45698847 (+)

Expression


Co-expression Network