G354860


Basic Information

Item Value
gene id G354860
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 44623210 ~ 44631036 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU402132
ttgtattagtagttgtattagtagttgtattagtagttgtagcagtagttgtagcagtagttgtagcagtagttgtagcagtagttgtagcagtagttgtattagtagttgtagcagtagttgtattagtagttgtagcagtagttgtattagtagttgtattagtagttgtagcagtagttgtattagtagttgtagcagtagttgta
>TU402131
agcagtagttgtattagtggttgtagcagtagttgtattagtggttgtagcagtagttgtattagtagttgtattagtagttgtattagtagttgtagcagtagttgtagcagtagttgtagcagtagttgtagcagtagttgtagcagtagttgtagcagtagttttgtTGTTACTAAGTAATGTTTGTTTAGTTATATTTGGACACTATTGAAAATGAGTTGGTGTAGAGATTTATTCCTGCCAAAtgttaaatagggaatagggtgtcatagagccctggtctaaagtagtgccctgcatagggaatagggtgtcatagagccctggtctaaagtagtgccctatatagggaatagggtgtcatagag
>TU402133
agcagtagttgtattagtggttgtagcagtagttgtattagtggttgtagcagtagttgtattagtagttgtattagtagttgtattagtagttgtagcagtagttgtagcagtagttgtagcagtagttgtagcagtagttgtagcagtagttgtattagtagttgtagcagtagttgtattagtagttgtagcagtagttgtattagtagttgtattagtagttgtagcagtagttgtattagtagttgtagcagtagttgta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU402132 False 209 lncRNA 0.33 3 44623210 44630693
TU402131 False 371 lncRNA 0.38 3 44625113 44631036
TU402133 True 265 lncRNA 0.35 3 44625113 44630693

Neighbor

gene id symbol gene type direction distance location
ppp1r14c ppp1r14c coding upstream 286232 44309473 ~ 44336978 (+)
myb myb coding upstream 512942 44084616 ~ 44110268 (+)
slc2a12 slc2a12 coding upstream 854227 43740263 ~ 43768983 (+)
tbpl1 tbpl1 coding upstream 900669 43704019 ~ 43722541 (+)
LOC118964509 NA coding upstream 1335951 43287182 ~ 43287259 (+)
LOC118964488 NA coding downstream 304638 44933784 ~ 44937203 (+)
LOC110510408 hmgn3 coding downstream 1102606 45733642 ~ 45752953 (+)
LOC110521126 LOC105018054 coding downstream 1915711 46546747 ~ 46575079 (+)
mapre3b LOC106591799 coding downstream 1944137 46575173 ~ 46607810 (+)
agbl5 LOC106608376 coding downstream 2063852 46694888 ~ 46745644 (+)
G354858 NA non-coding upstream 3631 44617897 ~ 44619579 (+)
G354857 NA non-coding upstream 14528 44606077 ~ 44608682 (+)
G354850 NA non-coding upstream 45754 44576881 ~ 44577456 (+)
G354844 NA non-coding upstream 76908 44545929 ~ 44546302 (+)
G354842 NA non-coding upstream 83704 44538600 ~ 44539506 (+)
G354793 NA non-coding downstream 18490 44649526 ~ 44655179 (+)
G354873 NA non-coding downstream 40185 44671221 ~ 44674540 (+)
G354875 NA non-coding downstream 45728 44676764 ~ 44677127 (+)
G354877 NA non-coding downstream 52354 44683390 ~ 44683656 (+)
G354789 NA non-coding downstream 70061 44701097 ~ 44701789 (+)
G354819 NA other upstream 161219 44459693 ~ 44461991 (+)
G354630 NA other upstream 632571 43990123 ~ 43990639 (+)
G354462 NA other upstream 1011648 43610962 ~ 43611562 (+)
sh3bgrl2 LOC106608335 other upstream 1344193 43253892 ~ 43279017 (+)
G355413 NA other downstream 344000 44975036 ~ 44975829 (+)
G355488 NA other downstream 432577 45063613 ~ 45064026 (+)
G355753 NA other downstream 989230 45620266 ~ 45624004 (+)
G355763 enpp5 other downstream 1058399 45640503 ~ 45698847 (+)

Expression


Co-expression Network