G354873



Basic Information


Item Value
gene id G354873
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 44671221 ~ 44674540 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU402150
ACAGAGTAATAGAGTTCTCTAACGTAGAAATGGGGAGAGTTCTCTAACGtagaaatagggagagttctctaacgtagaaatagggagagttctctaacgtagaaatagggagagttctctaacgtagaaatagggagagttctctaacgtagaaatagggagagttctCTAACAGAGTaatagggagagttctCTAACGTAGAAATGGGGAGAGTTCTCTAACAGAGTAATAGGGAGAGTTCTCTAACGtagaaatagggagagttctctaacgtagaaatagggagagttctctaacgtagaaatagggagagttctctaacgtagaaatagggagagttctctaacgtagaaatagggagagttctctaacgtagaaatagggagagttctctaacgtagaaatagggagagttctctaacatagaaatagggagagttcTCTATCTAACGtagaaatagggagagttctctaacgtagaaatagggagagttctCTAACGTAGAA
>TU402153
GGGAGAGTTCTCTAATGTAGAAATGGGGAGAGTTCTCTATCTAACatagaaatagggagagttctCTATCTAACATAGAAATAGGGAGAGTTATCTAACGTAGAAATAGggagagttctctaacgtagaaatagggagagttctCTAACGTAGAAATAGGGAGAGTTTTCTAACatagaaatagggagagttctCTAACATAGAAATAGGGGGAGTTATCTA

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU402150 False 508 lncRNA 0.40 3 44671221 44672802
TU402153 True 222 lncRNA 0.37 3 44672117 44674540

Neighbor


gene id symbol gene type direction distance location
ppp1r14c ppp1r14c coding upstream 334243 44309473 ~ 44336978 (+)
myb myb coding upstream 560953 44084616 ~ 44110268 (+)
slc2a12 slc2a12 coding upstream 902238 43740263 ~ 43768983 (+)
tbpl1 tbpl1 coding upstream 948680 43704019 ~ 43722541 (+)
LOC118964509 NA coding upstream 1383962 43287182 ~ 43287259 (+)
LOC118964488 NA coding downstream 261134 44933784 ~ 44937203 (+)
LOC110510408 hmgn3 coding downstream 1059102 45733642 ~ 45752953 (+)
LOC110521126 LOC105018054 coding downstream 1872207 46546747 ~ 46575079 (+)
mapre3b LOC106591799 coding downstream 1900633 46575173 ~ 46607810 (+)
agbl5 LOC106608376 coding downstream 2020348 46694888 ~ 46745644 (+)
G354793 NA non-coding upstream 16042 44649526 ~ 44655179 (+)
G354860 NA non-coding upstream 40185 44623210 ~ 44631036 (+)
G354861 NA non-coding upstream 46129 44624064 ~ 44625092 (+)
G354858 NA non-coding upstream 51642 44617897 ~ 44619579 (+)
G354857 NA non-coding upstream 62539 44606077 ~ 44608682 (+)
G354875 NA non-coding downstream 2224 44676764 ~ 44677127 (+)
G354877 NA non-coding downstream 8850 44683390 ~ 44683656 (+)
G354789 NA non-coding downstream 26557 44701097 ~ 44701789 (+)
G355300 NA non-coding downstream 31151 44705691 ~ 44706777 (+)
G355325 NA non-coding downstream 64887 44739427 ~ 44739677 (+)
G354819 NA other upstream 209230 44459693 ~ 44461991 (+)
G354630 NA other upstream 680582 43990123 ~ 43990639 (+)
G354462 NA other upstream 1059659 43610962 ~ 43611562 (+)
sh3bgrl2 LOC106608335 other upstream 1392204 43253892 ~ 43279017 (+)
G355413 NA other downstream 300496 44975036 ~ 44975829 (+)
G355488 NA other downstream 389073 45063613 ~ 45064026 (+)
G355753 NA other downstream 945726 45620266 ~ 45624004 (+)
G355763 enpp5 other downstream 1014895 45640503 ~ 45698847 (+)

Expression



Co-expression Network