G354877


Basic Information

Item Value
gene id G354877
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 44683390 ~ 44683656 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU402159
CTAGCAGTATAAATTAAAGCTGATTGGCCACGTCACTGCAGTGACCCCTGACCTGTTGCATGACAGATTGGCTGTTTTAAATGTttgccagtctctctgtctctgcaggcCTCTGCATTATTCAATACCTGTGAGAGGAGAtcactctctttctacctctccattcctcttcctcccatTCCACTATCTAGgtctccttctacctctccattcctcttcctccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU402159 True 224 lncRNA 0.47 2 44683390 44683656

Neighbor

gene id symbol gene type direction distance location
ppp1r14c ppp1r14c coding upstream 346412 44309473 ~ 44336978 (+)
myb myb coding upstream 573122 44084616 ~ 44110268 (+)
slc2a12 slc2a12 coding upstream 914407 43740263 ~ 43768983 (+)
tbpl1 tbpl1 coding upstream 960849 43704019 ~ 43722541 (+)
LOC118964509 NA coding upstream 1396131 43287182 ~ 43287259 (+)
LOC118964488 NA coding downstream 252018 44933784 ~ 44937203 (+)
LOC110510408 hmgn3 coding downstream 1049986 45733642 ~ 45752953 (+)
LOC110521126 LOC105018054 coding downstream 1863091 46546747 ~ 46575079 (+)
mapre3b LOC106591799 coding downstream 1891517 46575173 ~ 46607810 (+)
agbl5 LOC106608376 coding downstream 2011232 46694888 ~ 46745644 (+)
G354875 NA non-coding upstream 6263 44676764 ~ 44677127 (+)
G354873 NA non-coding upstream 8850 44671221 ~ 44674540 (+)
G354793 NA non-coding upstream 28211 44649526 ~ 44655179 (+)
G354860 NA non-coding upstream 52354 44623210 ~ 44631036 (+)
G354861 NA non-coding upstream 58298 44624064 ~ 44625092 (+)
G354789 NA non-coding downstream 17441 44701097 ~ 44701789 (+)
G355300 NA non-coding downstream 22035 44705691 ~ 44706777 (+)
G355325 NA non-coding downstream 55771 44739427 ~ 44739677 (+)
G355330 NA non-coding downstream 62105 44745761 ~ 44746112 (+)
G355353 NA non-coding downstream 139247 44822903 ~ 44824235 (+)
G354819 NA other upstream 221399 44459693 ~ 44461991 (+)
G354630 NA other upstream 692751 43990123 ~ 43990639 (+)
G354462 NA other upstream 1071828 43610962 ~ 43611562 (+)
sh3bgrl2 LOC106608335 other upstream 1404373 43253892 ~ 43279017 (+)
G355413 NA other downstream 291380 44975036 ~ 44975829 (+)
G355488 NA other downstream 379957 45063613 ~ 45064026 (+)
G355753 NA other downstream 936610 45620266 ~ 45624004 (+)
G355763 enpp5 other downstream 1005779 45640503 ~ 45698847 (+)

Expression


Co-expression Network