G355401


Basic Information

Item Value
gene id G355401
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 44849168 ~ 44849701 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU402941
attacctcactaacatgctgctactatagtatattacctcactgACATGCTGCtcctatagtatattacctcactaacatgctgctactatagtatattacctcactgACATGCTGCtcctatagtatattacctcactaacatgctgctactatagtatattacctcactgACATGCTGCtcctatagtatattacctcactaacatgctgctactatagtatattacctcactaacatgctgctactatagtatattacctcactgACATGCTGCtcctatagtatattacctcactaacatgctgctactatattatattacctcactaacatgctgctactatagtatattacctcactaacatgctgctactatagtatattaccacACTAACATGCtactactatattatattacccctaacatgctgctactatattatattacctcactaacatgctgctactatagtatattacctcactaacatgctgctactatagtatattacctcactaacatgctgctac

Function

NR:

description
proline-rich extensin-like protein EPR1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU402941 True 534 lncRNA 0.36 1 44849168 44849701

Neighbor

gene id symbol gene type direction distance location
nbas LOC104962557 coding upstream 148764 44401316 ~ 44700404 (+)
ppp1r14c ppp1r14c coding upstream 512190 44309473 ~ 44336978 (+)
myb myb coding upstream 738900 44084616 ~ 44110268 (+)
slc2a12 slc2a12 coding upstream 1080185 43740263 ~ 43768983 (+)
tbpl1 tbpl1 coding upstream 1126627 43704019 ~ 43722541 (+)
LOC118964488 NA coding downstream 85973 44933784 ~ 44937203 (+)
LOC110510408 hmgn3 coding downstream 883941 45733642 ~ 45752953 (+)
LOC110521126 LOC105018054 coding downstream 1697046 46546747 ~ 46575079 (+)
mapre3b LOC106591799 coding downstream 1725472 46575173 ~ 46607810 (+)
agbl5 LOC106608376 coding downstream 1845187 46694888 ~ 46745644 (+)
G355353 NA non-coding upstream 24933 44822903 ~ 44824235 (+)
G355330 NA non-coding upstream 103056 44745761 ~ 44746112 (+)
G355325 NA non-coding upstream 109491 44739427 ~ 44739677 (+)
G355300 NA non-coding upstream 142391 44705691 ~ 44706777 (+)
G354789 NA non-coding upstream 147379 44701097 ~ 44701789 (+)
G355402 NA non-coding downstream 9679 44859380 ~ 44859831 (+)
G355407 NA non-coding downstream 82766 44932467 ~ 44938219 (+)
G355411 NA non-coding downstream 88624 44938325 ~ 44939825 (+)
G355445 NA non-coding downstream 102561 44952262 ~ 44952664 (+)
G354819 NA other upstream 387177 44459693 ~ 44461991 (+)
G354630 NA other upstream 858529 43990123 ~ 43990639 (+)
G354462 NA other upstream 1237606 43610962 ~ 43611562 (+)
sh3bgrl2 LOC106608335 other upstream 1570151 43253892 ~ 43279017 (+)
G355413 NA other downstream 125335 44975036 ~ 44975829 (+)
G355488 NA other downstream 213912 45063613 ~ 45064026 (+)
G355753 NA other downstream 770565 45620266 ~ 45624004 (+)
G355763 enpp5 other downstream 839734 45640503 ~ 45698847 (+)

Expression


Co-expression Network