G356080


Basic Information

Item Value
gene id G356080
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 45820794 ~ 45845094 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU403906
CACCATAGGATGGAGAGATAGGACGTGGACACCCCAGAGGACGGTCCCCCACATAGGACCAGAGGGCACCAGTACCGGACCACCTTTATGAGCACCCAGACTCTGCGGGAAACTCAAAGAACACCAACTTCCTTCACCCCAACAGAAGCTATCCATTCTTGGACCCTGACTCCGTGCTTTGTCCCCCTCCAGAAACTCCACGGACCGGATTAACCCACCCACTCCATCAAAACAGCAAACCCAGCTAAAAGGCGAAGCCCTCACCAATCCAGTGGAGAGATAGGATATGGACACCCCAGAGGACGGTCCCCCACACAGGACCAGAGGGCCCCAAAACCAAACCACCTTTACAAACACTAAAGACGCTGCAGGAAACTCAAAGAACACCATCAACTTCCTACAACCCAACAGAAGCTATTGATTTGTGGACCCTGACCCCGTGCTCTGTCCCCCTCCAGAAACCCCACGGACCGGATAAACCCACCTGCTCCATCCAGCAGCAAAACACAGCGAAAGGCGAAGCCCTCACCAATCCAGTACCGCAGGGTTAATGCCTCCACAGGTGGAACAATACCACAGCAAAATATAAGAAACCGTTTGGAACACCAGACCctcaccactaccactctgaaaaaaacaggacaacctggtctcaccaacccAAGACCCACAAATAACCAATGTTAAAGGAACTCTCCCAAGATAGAGGCCTAACCCCACCACACCCGATGGCCCACTTCCACCATACAACTCACCAAGCTACCGGGTGGCGACCCACATCCAGAAAAGACTACGGCCAAAATAACTACTCCCTCTTCACACACCGATCCTGGCCTCCCAaatgaataacaaaaaaaacCTCAAGGATTCCTTGGTATACCACCACCTCCAAAGACCACAACAAAGGAACCAAAGAATCTCACCGGGACCCACGGACCAAGGATGGACCTCCCAAACCCCCACCATGCCAGAGGACCCAGAGACCCGGTCATACCCTCACAAGGTTGACATAGGGAAGGGCTCTTTTTGGGCAACACAAACCCTCCGAACCTTCCCCCACatcataccctgaccagggtgatTGAGGGAACGGAGCAGAGGCAGAGTGTTAAGGTGGCCTCTGCATTTTCATCTCCATCCCATACCCAGACCTGGGTGGTATGGAATGATAATCAGCAGGAACAGGTTAACACTCCGTTACCACCTACCTCCATACTCTCTTCCcagtcaacaccatcattcatggGATTGCTGGACAGAACCACTGGATGACATCCCCAGCAGGCAACCAAACCCACAGCCAATCCTACATGATGGGAATCCAGGACCTTCTAGACACCTAGCCCCTCGAGAAGGACACGCCTCAAACCTGCCAAACAGGTCACCCCTTCAAACAGAATACCACCACCGCTCACCACACCATAGGATGGAGAGATAGGACGTGGACACCCCAGAGGACGGTCCCCCACATAGGACCAGAGGGCACCAGTACCGGACCACCTTTATGAGCACCCAGACTCTGCGGGAAACTCAAAGAACACCAACTTCCTTCACCCCAACAGAAGCTATCCATTCTTGGACCCTGACTCCGTGCTTTGTCCCCCTCCAGAAACTCCACGGACCGGCTTAACCCACCCACTCCATCAAAACAGCAAACCCAGCTAAAAGGCGAAGCCCTCACCAATCCAGTGGAGAGATAGGATATGGACACCCCAGAGGACGGTCCCCCACACAGGACCAGAGGGCCCCAAAACCAAACCACCTTTACAAACACTAAAGACGCTGCAGGAAACTCAAAGAACACCATCAACTTCCTACAACCCAACAGAAGCTATTGATTTGTGGACCCTGACCCCGTGCTCTGTCCCCCTCCAGAAACCCCACGGACCGGATAAACCCACCTGCTCCATCCAGCAGCAAAACACAGCGAAAGGCGAAGCCCTCACCAATCCAGTACCGCAGGGTTAATGCCTCCACAGGTGGAACAATACCACAGCAAAATATAAGAAACCGTTTGGAACACCAGACCctcaccactaccactctgaaaaaaacaggacaacctggtctcaccaacccAAGACCCACAAATAACCAATGTTAAAGGAACTCTCCCAAGATAGAGGCCTAACCCCACCACACCCGATGGCCCACTTCCACCATACAACTCACCAAGCTACCGGGTGGCGACCCACATCCAGAAAAGACTACGGCCAAAATAACTACTCCCTCTTCACACACCGATCCTGGCCTCCCAaatgaataacaaaaaaaacCTCAAGGATTCCTTGGTATACCACCACCTCCAAAGACCACAACAAAGGAACCAAAGAATCTCACCGGGACCCACGGACCAAGGATGGACCTCCCAAACCCCCACCATGCCAGAGGACCCAGAGACCCGGTCATACCCTCACAAGGTTGACATAGGGAAGGGCTCTTTTTGGGCAACACAAACCCTCCGAACCTTCCCCCACatcataccctgaccagggtgatTGAGGGAACGGAGCAGAGGCAGAGTGTTAAGGTGGCCTCTGCATTTTCATCTCCATCCCATACCCAGACCTGGGTGGTATGGAATGATAATCAGCAGGAACAGGTTAACACTCCGTTACCACCTACCTCCATACTCTCTTCCcagtcaacaccatcattcatggGATTGCTGGACAGAACCACTGGATGACATCCCCAGCAGGCAACCAAACCCACAGCCAATCCTACATGATGGGAATCCAGGACCTTCTAGACACCTAGCCCCTCGAGA
>TU403908
CACCATAGGATGGAGAGATAGGACGTGGACACCCCAGAGGACGGTCCCCCACATAGGACCAGAGGGCACCAGTACCGGACCACCTTTATGAGCACCCAGACTCTGCGGGAAACTCAAAGAACACCAACTTCCTTCACCCCAACAGAAGCTATCCATTCTTGGACCCTGACTCCGTGCTTTGTCCCCCTCCAGAAACTCCACGGACCGGATTAACCCACCCACTCCATCAAAACAGCAAACCCAGCTAAAAGGCGAAGCCCTCACCAATCCAGTGGAGAGATAGGATATGGACACCCCAGAGGACGGTCCCCCACACAGGACCAGAGGGCCCCAAAACCAAACCACCTTTACAAACACTAAAGACGCTGCAGGAAACTCAAAGAACACCATCAACTTCCTACAACCCAACAGAAGCTATTGATTTGTGGACCCTGACCCCGTGCTCTGTCCCCCTCCAGAAACCCCACGGACCGGATAAACCCACCTGCTCCATCCAGCAGCAAAACACAGCGAAAGGCGAAGCCCTCACCAATCCAGTACCGCAGGGTTAATGCCTCCACAGGTGGAACAATACCACAGCAAAATATAAGAAACCGTTTGGAACACCAGACCctcaccactaccactctgaaaaaaacaggacaacctggtctcaccaacccAAGACCCACAAATAACCAATGTTAAAGGAACTCTCCCAAGATAGAGGCCTAACCCCACCACACCCGATGGCCCACTTCCACCATACAACTCACCAAGCTACCGGGTGGCGACCCACATCCAGAAAAGACTACGGCCAAAATAACTACTCCCTCTTCACACACCGATCCTGGCCTCCCAaatgaataacaaaaaaaacCTCAAGGATTCCTTGGTATACCACCACCTCCAAAGACCACAACAAAGGAACCAAAGAATCTCACCGGGACCCACGGACCAAGGATGGACCTCCCAAACCCCCACCATGCCAGAGGACCCAGAGACCCGGTCATACCCTCACAAGGTTGACATAGGGAAGGGCTCTTTTTGGGCAACACAAACCCTCCGAACCTTCCCCCACatcataccctgaccagggtgatTGAGGGAACGGAGCAGAGGCAGAGTGTTAAGGTGGCCTCTGCATTTTCATCTCCATCCCATACCCAGACCTGGGTGGTATGGAATGATAATCAGCAGGAACAGGTTAACACTCCGTTACCACCTACCTCCATACTCTCTTCCcagtcaacaccatcattcatggGATTGCTGGACAGAACCACTGGATGACATCCCCAGCAGGCAACCAAACCCACAGCCAATCCTACATGATGGGAATCCAGGACCTTCTAGACACCTAGCCCCTCGAGAAGGACACGCCTCAAACCTGCCAAACAGGTCACCCCTTCAAACAGAATACCACCACCGCTCACCACACCATAGGATGGAGAGATAGGACGTGGACACCCCAGAGGACGGTCCCCCACATAGGACCAGAGGGCACCAGTACCGGACCACCTTTATGAGCACCCAGACTCTGCGGGAAACTCAAAGAACACCAACTTCCTTCACCCCAACAGAAGCTATCCATTCTTGGACCCTGACTCCGTGCTTTGTCCCCCTCCAGAAACTCCACGGACCGGATTAACCCACCCACTCCATCAAAACAGCAAACCCAGCTAAAAGGCGAAGCCCTCACCAATCCAGTGGAGAGATAGGATATGGACACCCCAGAGGACGGTCCCCCACACAGGACCAGAGGGCCCCAAAACCAAACCACCTTTACAAACACTAAAGACGCTGCAGGAAACTCAAAGAACACCATCAACTTCCTACAACCCAACAGAAGCTATTGATTTGTGGACCCTGACCCCGTGCTCTGTCCCCCTCCAGAAACCCCACGGACCGGATAAACCCACCTGCTCCATCCAGCAGCAAAACACAGCGAAAGGCGAAGCCCTCACCAATCCAGTACCGCAGGGTTAATGCCTCCACAGGTGGAACAATACCACAGCAAAATATAAGAAACCGTTTGGAACACCAGACCctcaccactaccactctgaaaaaaacaggacaacctggtctcaccaacccAAGACCCACAAATAACCAATGTTAAAGGAACTCTCCCAAGATAGAGGCCTAACCCCACCACACCCGATGGCCCACTTCCACCATACAACTCACCAAGCTACCGGGTGGCGACCCACATCCAGAAAAGACTACGGCCAAAATAACTACTCCCTCTTCACACACCGATCCTGGCCTCCCAaatgaataacaaaaaaaacCTCAAGGATTCCTTGGTATACCACCACCTCCAAAGACCACAACAAAGGAACCAAAGAATCTCACCGGGACCCACGGACCAAGGATGGACCTCCCAAACCCCTCAAGGACCAACACCACTTCCCACGGGAACCGATGTCAAAAGAACTCTCCCTAGAAGCGGATCAACCCCACCATACCTGATGGCCTACCCCCACCATACAACTCACCCAGCTTCCGAGTGGCTACTCGCATCCCCCCAAAAATGATGTCTCAAATCCAAAAAACTACTCTCTCTTCAAAGGGAACACAAAAAAAATCTCTCAAGGATTCCTTGGTCAACAGCCACCTCCAAAATAAAACCACAACGTAGACATCCCACTGAGACTCACGGACCAAGGATGGACCTACCTAAAAAAAACCCTCCAggaccaacaccactaccacggGCTGGACCACCACTGAGGCTTACAGTACAGCTGAGGAACATCTGGACATACACTACACCcgcaccttacacaccccacatcccatacaaaagacagggggtcattaagaccacaaaaacagacctccaatagcaccatagagttaccatgaccatggactctCAATATAACTTTCCTGTAGCTACTTTActagcaccatagagttaccatgaccatggacgcTCAATAAACACTTTCCTTCAGCCACTTTACTAAACACTATAGAGTTACCGTGACCACGGACTCTCAAAAAAATATTTACCTTTAGTTACTTTTACTTACACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU403906 False 2770 lncRNA 0.53 4 45820794 45843421
TU403908 True 3026 lncRNA 0.51 4 45820794 45845094

Neighbor

gene id symbol gene type direction distance location
LOC110510408 hmgn3 coding upstream 67841 45733642 ~ 45752953 (+)
LOC118964488 NA coding upstream 883591 44933784 ~ 44937203 (+)
nbas LOC104962557 coding upstream 1120390 44401316 ~ 44700404 (+)
ppp1r14c ppp1r14c coding upstream 1483816 44309473 ~ 44336978 (+)
myb myb coding upstream 1710526 44084616 ~ 44110268 (+)
LOC110521126 LOC105018054 coding downstream 701653 46546747 ~ 46575079 (+)
mapre3b LOC106591799 coding downstream 730079 46575173 ~ 46607810 (+)
agbl5 LOC106608376 coding downstream 849794 46694888 ~ 46745644 (+)
G356079 NA non-coding upstream 7052 45812623 ~ 45813742 (+)
G356069 NA non-coding upstream 16547 45755647 ~ 45804247 (+)
G356039 NA non-coding upstream 103016 45717537 ~ 45717778 (+)
G356038 NA non-coding upstream 103753 45716821 ~ 45717041 (+)
G355787 NA non-coding upstream 111584 45705848 ~ 45709210 (+)
G356090 NA non-coding downstream 15757 45860851 ~ 45862045 (+)
G356127 NA non-coding downstream 70443 45915537 ~ 45916115 (+)
G356138 NA non-coding downstream 87085 45932179 ~ 45932509 (+)
G356202 NA non-coding downstream 172490 46017584 ~ 46018304 (+)
G356219 NA non-coding downstream 211702 46056796 ~ 46060036 (+)
G355763 enpp5 other upstream 121947 45640503 ~ 45698847 (+)
G355753 NA other upstream 196790 45620266 ~ 45624004 (+)
G355488 NA other upstream 756768 45063613 ~ 45064026 (+)
G355413 NA other upstream 844965 44975036 ~ 44975829 (+)
G356586 hadhb other downstream 521132 46366226 ~ 46388253 (+)
G356693 NA other downstream 726461 46571555 ~ 46572865 (+)
G356688 NA other downstream 775707 46620801 ~ 46625417 (+)
G356728 NA other downstream 805991 46651085 ~ 46651564 (+)
G356789 NA other downstream 939186 46784280 ~ 46784753 (+)

Expression


Co-expression Network