G356586 (hadhb)


Basic Information

Item Value
gene id G356586
gene name hadhb
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 46366226 ~ 46388253 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU404484
GCTAGTTCTATTTTTTAATTAAATCCTTGTAGTAACACATTAATTTGTAAGAAAACAAAAAGGCAGAGTATAAACATATCATATTGATCGGATCAGGGTGCATGTCAAGAGTCTAATGGCTTCTCCTCCATCTGCCCTGATAAGAACACAGCTGATGGCATCACGGTAGACAACTACCGACTAAGAATTTCCTTTTATGAGAGGAAATGAGGAGGCCACAGACTATGGAGAAAggcccactgttactgtctgtgtGAATGCTACTGCAGCGTTGCACCCTAACAGCAAGGCAACCTAAAACTCTGCTATAATTTACACCCTCTcctccacacaaacacatgccCTAACCCAACCAGGCAAAATGGTGTTAGTATGTACAGTCTGATAATGTGGGTGTTACTCCACTCTGTGTGTATATGCGTACACAGTCTTCTCCTGCATCATCTCAGTCCTCCCAGAATCCTGTTCTACTGGGGGTATGCTTCGATCACCATTGCAtgtccctgtccTCCCGCAGCGCATGCAGCCACCAGTCCATACTGGCCCCCCTCCTTCAGCAGGCGGTGTGCTACCGTGGTTACCAGACGGCAGCCGGTGGCTCCAAACGGATGACCAAGAGACAGACTGCCCCCCCACAGGTTAAACTTCTCCATGGCAGGGGCCCCCACCTTAGCCTTCCGTCCCATGTAGGTCTGTGCAAACCAGTCTGAATCCAACGCTTTCAGGTTAGCCATGATCTGGCCAGCAAAGGCCTCATGGAACTCGAAGACATCAATGTCATCCATAGTCAACCCTGCACGTGCCAGAACTTTCGGGGTTCCATATGCTGGCCCAAGCAGCAGCTGGTCTTTGGGGTCCTGAGACACGAACACAAAGTCTCTGAGGTAGGCTTTGGGCTTGTATCCCATGGCCAGGGCTTTCTCTTCTGACATGATGAGGACAGCTGATGCACCATCGGTCAGAAAGGAAGAgttagcagcagtaacagtgccATGAGGTTTGATAAAGGCAGGTTTCAGTTTGGCCAGTTGTTCCATGGAGGATGGACGGATCCCGTTGTCCTTGGCGACCGTGTCacgaCTGGCACCTTGAAGCTGATGACGTCACTGAGGAGTCCTGCATCCTGAGCCTGTTTGGCTAGTGTGTGTGATCGTAGAGCGAACTCATCCTGCTCCAGCCGAGTCACTCCAAACGCTGCAGCAAGACGGTCTGCACTGTGACCCATCGTCTCTGCCGTGGAGAACTCTGCTACAGCAGGCAGcttcAGGTGTGAGATGAGCCATCCTGATAGAGCCTATAAGGCTGAGGCGTTGTCCGAGGGTCTTCGCTCTGTTCAGAGCCAACATGGTCTTCCTCATCTTCCTGCTGTGACGAATAGGAACGTCCGACATAAACTCCACCCCTCCAGCTACTATAGTATCACACTGGCCTGCTGTGATCAGCCCCacaccTGTCATAGCGACGTTGGAGGAGATGCAGGCCATGGTGACGGTGTGAGATGGGATCTTATCAGAGAAGCCTGCTCCCAACGAAGCctctaGCCACGTTGCTGGTCTTCACCTCCTGGATGACGGTTCCATAGATTAtgtaatctactgcatctttaggGAGACTGGTTTTATGCAGCAGACCCTGTAGAGCTGCTCTGGCAAGGTCATGGGGCATCAGATCAGCATATGTGGTTCCTGAGAGAAGGAACGGTGTTCTGACTCCTTCCACCAGAACTATGTTCTTCACTCCAGGTTTGGCCAATGTCTTCTTACTCTTAGTCTGGACCTGGGCATGGAGCTGGACGGATGTACTGAGGGAGCGGGTCGcatacTGCACAGCCCAGGCAGGGTTGACTGGAGGACAGCACCGTAGAGAGTTCATCAACATGGACGCCATTTTATCTTATATCTGTCTCCCGGCAAAGCTCTCCTGTCGGTGTCTCTCTCCGGCGTCTGTGTCTGAATCAGATGCGGACTATCAAACCGCCTGTGTTCTCAGGACCCGTAAAGGGGTTTGGTTGTCCTAAGAGATGCCCAATTTAAAGCGTAAAAAAACTCATGAGGTATGAAACCTATTTTTACCTTTCACTGGAGATAATATCGTCAAAATCTAACTTAAGatttacaaaaaatgtttttacttttGACTAATTCAACGATGAATATATGAACATTTTCTTAACGGCGCTCTTTCGACTCTTCTCTGAGTTGTAAACGGGT
>TU404485
GCTAGTTCTATTTTTTAATTAAATCCTTGTAGTAACACATTAATTTGTAAGAAAACAAAAAGGCAGAGTATAAACATATCATATTGATCGGATCAGGGTGCATGTCAAGAGTCTAATGGCTTCTCCTCCATCTGCCCTGATAAGAACACAGCTGATGGCATCACGGTAGACAACTACCGACTAAGAATTTCCTTTTATGAGAGGAAATGAGGAGGCCACAGACTATGGAGAAAggcccactgttactgtctgtgtGAATGCTACTGCAGCGTTGCACCCTAACAGCAAGGCAACCTAAAACTCTGCTATAATTTACACCCTCTcctccacacaaacacatgccCTAACCCAACCAGGCAAAATGGTGTTAGTATGTACAGTCTGATAATGTGGGTGTTACTCCACTCTGTGTGTATATGCGTACACAGTCTTCTCCTGCATCATCTCAGTCCTCCCAGAATCCTGTTCTACTGGGGGTATGCTTCGATCACCATTGCAtgtccctgtccTCCCGCAGCGCATGCAGCCACCAGTCCATACTGGCCCCCCTCCTTCAGCAGGCGGTGTGCTACCGTGGTTACCAGACGGCAGCCGGTGGCTCCAAACGGATGACCAAGAGACAGACTGCCCCCCCACAGGTTAAACTTCTCCATGGCAGGGGCCCCCACCTTAGCCTTCCGTCCCATGTAGGTCTGTGCAAACCAGTCTGAATCCAACGCTTTCAGGTTAGCCATGATCTGGCCAGCAAAGGCCTCATGGAACTCGAAGACATCAATGTCATCCATAGTCAACCCTGCACGTGCCAGAACTTTCGGGGTTCCATATGCTGGCCCAAGCAGCAGCTGGTCTTTGGGGTCCTGAGACACGAACACAAAGTCTCTGAGGTAGGCTTTGGGCTTGTATCCCATGGCCAGGGCTTTCTCTTCTGACATGATGAGGACAGCTGATGCACCATCGGTCAGAAAGGAAGAgttagcagcagtaacagtgccATGAGGTTTGATAAAGGCAGGTTTCAGTTTGGCCAGTTGTTCCATGGAGGATGGACGGATCCCGTTGTCCTTGGCGACCGTGTCacgaccGGCACCTTGAAGCTGATGACGTCACTGAGGAGTCCTGCATCCTGAGCCTGTTTGGCTAGTGTGTGTGATCGTAGAGCGAACTCATCCTGCTCCAGCCGAGTCACTCCAAACGCTGCAGCAAGACGGTCTGCACTGTGACCCATCGTCTCTGCCGTGGAGAACTCTGCTACAGCAGGCAGctaaacacacacattatataaaaaaaaaacactatacagtgccttcaggaagtattcaaacgccttga

Function

symbol description
hadhb Predicted to enable acyltransferase activity, transferring groups other than amino-acyl groups. Predicted to be involved in fatty acid beta-oxidation. Predicted to be active in mitochondrion. Is expressed in female organism. Human ortholog(s) of this gene implicated in mitochondrial metabolism disease and mitochondrial trifunctional protein deficiency. Orthologous to human HADHB (hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta).

NR:

description
trifunctional enzyme subunit beta, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU404484 False 2210 lncRNA 0.50 16 46366226 46388253
TU404485 True 1329 TUCP 0.50 8 46366226 46373781

Neighbor

gene id symbol gene type direction distance location
LOC110510408 hmgn3 coding upstream 613273 45733642 ~ 45752953 (+)
LOC118964488 NA coding upstream 1429023 44933784 ~ 44937203 (+)
nbas LOC104962557 coding upstream 1665822 44401316 ~ 44700404 (+)
ppp1r14c ppp1r14c coding upstream 2029248 44309473 ~ 44336978 (+)
myb myb coding upstream 2255958 44084616 ~ 44110268 (+)
LOC110521126 LOC105018054 coding downstream 158494 46546747 ~ 46575079 (+)
mapre3b LOC106591799 coding downstream 186920 46575173 ~ 46607810 (+)
agbl5 LOC106608376 coding downstream 306635 46694888 ~ 46745644 (+)
G356291 NA non-coding upstream 120329 46183862 ~ 46245897 (+)
G356290 NA non-coding upstream 182553 46183071 ~ 46183673 (+)
G356232 NA non-coding upstream 262517 46095825 ~ 46103709 (+)
G356224 NA non-coding upstream 284663 46063213 ~ 46081563 (+)
G356221 NA non-coding upstream 304817 46057675 ~ 46061409 (+)
G356588 NA non-coding downstream 6280 46394533 ~ 46395171 (+)
G356589 garem2 non-coding downstream 8316 46396569 ~ 46400606 (+)
G356617 NA non-coding downstream 27437 46415690 ~ 46416007 (+)
G356628 NA non-coding downstream 44728 46432981 ~ 46433363 (+)
G356621 NA non-coding downstream 85342 46473595 ~ 46476951 (+)
G355763 enpp5 other upstream 667379 45640503 ~ 45698847 (+)
G355753 NA other upstream 742222 45620266 ~ 45624004 (+)
G355488 NA other upstream 1302200 45063613 ~ 45064026 (+)
G355413 NA other upstream 1390397 44975036 ~ 44975829 (+)
G356693 NA other downstream 183302 46571555 ~ 46572865 (+)
G356688 NA other downstream 232548 46620801 ~ 46625417 (+)
G356728 NA other downstream 262832 46651085 ~ 46651564 (+)
G356789 NA other downstream 396027 46784280 ~ 46784753 (+)

Expression


Co-expression Network