G356621


Basic Information

Item Value
gene id G356621
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 46473595 ~ 46476951 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU404522
CTTATTTTTAATGGAGCTGCAAAACTGTTTGAATTTCCTCGAGAACGTTCTCTTACatacaggggcggcaggtagcctagcggttaacagtgttgggccagtaaccgaacggtcgctggttcaaatccccgagctgactaggtgaaaaatctgtcaatgtgccattgagcaaggcacttaaccctaattgctcctataagtcactctggataagagtgtctgctaaatgaaaacAGAGTGAAAGTTTCAACAGTACAGAAACATGGCATCACAAATGCTCCCAACCCAAACAAACCCCCATCGTTAAGCAGACATCCTAACAAGATCTGGTTGGTGGGGAAATTCAAACCTTTCTGCTTAGCTCCGTCGTGGGAGGAGCCAGAATACCAAACTTTTAATTGAATTGGGTGGGTGAGGTTCCACCCGTCTTCCATATAAGGCacaagactaaataaaccccATCTCCGTTACTTGTTTACAGATGTCAAAATACGGCACCTTGACAATATAACCCACTAGTGTACAAAATGTTAatcctacattttttttcttatttgtttttttctttgacCAATGGTGAGGGGACCAGGAGGCTTCAGCCAAAGGAAAGATTAAAAAGTTTACTGACTTTCACTCTCATTTTGCAAATAAACAGGAAACATGATTTATCTTTTTATCAGAAACAAACTGATCTTTAGAAAGCtaaaaagatagagagaggggacaggggacaggggaggagagagagaggacaggggaggagagagagaggacaggggaggagagagagaggggacaggggaggagagagagagaggacaggggaggagagaaagagcagagaggggacaggggaggagagagagagagagagagaggggacaggggaggagagagagagagagagagagagagagagagaggggggacaggggaggagagagaggggacaggggaggagagagagaggggacaggggaggagagagagagaggggacaggggaggagagagagaggggacaggggaagagagagagagagagagagagaggggacaggggaggagagagagagagagagagagagaggggacaggggaggagagagagagagagaggggacaggggaggagagagagagaggggaggagagagagagaggggacaggggaggagagagagagaggggacaggggaggagagagagagaggggacaggggaggagagagagagaggggacaggggaggagagagagagaggggacaggggaggagagagagagaggggacaggggaggagagagagaggggacaggggaggagagagagaggggacaggggaggagagagagaggggacaggggaggagagagagagagagagagagagagagagagagagagagagagaggggaggagagagagttggtcaAGAGAATTGATGACAAAAGATCGAGGGGATGAGTGTTAGAGAGTTAGCTACTAGAGATAAAGAGtgtgcatgtcagtgtgtgtgagggagggacagagggctGTTCTAACTGCAGCACTTGCTCTTCCATCCTGTGACTCCACTCCCACCGCTGATGTCCACGTTTTCACTGTTGGGCTCTTTGACGGGCGTCTGCAACACACACCCACgttacacacacattatacatgcAAACATTGCTTACACCACCATCATcacatacacagtaccagtcaaaggtttggaccaACTGAttcatttggactattttctacattgtagaataatagttaagacatcaaaactatgaa
>TU404524
CTTATTTTTAATGGAGCTGCAAAACTGTTTGAATTTCCTCGAGAACGTTCTCTTACatacaggggcggcaggtagcctagcggttaacagtgttgggccagtaaccgaacggtcgctggttcaaatccccgagctgactaggtgaaaaatctgtcaatgtgccattgagcaaggcacttaaccctaattgctcctataagtcactctggataagagtgtctgctaaatgaaaacAGAGTGAAAGTTTCAACAGTACAGAAACATGGCATCACAAATGCTCCCAACCCAAACAAACCCCCATCGTTAAGCAGACATCCTAACAAGATCTGGTTGGTGGGGAAATTCAAACCTTTCTGCTTAGCTCCGTCGTGGGAGGAGCCAGAATACCAAACTTTTAATTGAATTGGGTGGGTGAGGTTCCACCCGTCTTCCATATAAGGCacaagactaaataaaccccATCTCCGTTACTTGTTTACAGATGTCAAAATACGGCACCTTGACAATATAACCCACTAGTGTACAAAATGTTAatcctacattttttttcttatttgtttttttctttgacCAATGGTGAGGGGACCAGGAGGCTTCAGCCAAAGGAAAGATTAAAAAGTTTACTGACTTTCACTCTCATTTTGCAAATAAACAGGAAACATGATTTATCTTTTTATCAGAAACAAACTGATCTTTAGAAAGCtaaaaagatagagagaggggacaggggacaggggaggagagagagagagagagagagaggacaggggaggagagagagagagagaggacaggggagagagagagagagagagaggacaggggaggagagagagagagagaggacaggggaggacaggggaggagagagagagagagaggacaggggaggacaggggaggagagagagagagagaggggaggagagagagagagagagaggggaggagagagagagagagacaggggaggagagagagagaggacaggggaggagagagagagaggacaggggaggagagagagaggacaggggaggagagagagagaggacaggggaggagagagagagaggacaggggaggagagagagagaggacaggggaggagagagagagagagagaggacaggggaggagagagagagagagaggacaggggaggagagagagagaggacaggggaggagagagagagaggacaggggaggagagagagagaggacaggggaggagagagagagaggacaggggaggagagagagagaggacaggggaggagagagagagaggacaggggaggagagagagagaggacaggggaggagagagagagagaggacaggggaggagagagagagaggggacaggggaggagagagagagaggacaggggaggagagagagagagagagaggacaggggaggagagagagagagagagaggacaggggaggagagagagagagagagagagagagagagagaggggggacaggggaggagagagaggggacaggggaggagagagagaggggacaggggaggagagagagagaggggacaggggaggagagagagaggggacaggggaagagagagagagagagagagagaggggacaggggaggagagagagagagagagagagagaggggacaggggaggagagagagagagagaggggacaggggaggagagagagagaggggaggagagagagagaggggacaggggaggagagagagagaggggacaggggaggagagagagagaggggacaggggaggagagagagagaggggacaggggaggagagagagagaggggacaggggaggagagagagagaggggacaggggaggagagagagaggggacaggggaggagagagagaggggacaggggaggagagagagaggggacaggggaggagagagagagagagagagagagagagagagagagagagagagaggggaggagagagagttggtcaAGAGAATTGATGACAAAAGATCGAGGGGATGAGTGTTAGAGAGTTAGCTACTAGAGATAAAGAGtgtgcatgtcagtgtgtgtgagggagggacagagggctGTTCTAACTGCAGCACTTGCTCTTCCATCCTGTGACTCCACTCCCACCGCTGATGTCCACGTTTTCACTGTTGGGCTCTTTGACGGGCGTCTGCAACACACACCCACgttacacacacattatacatgcAAACATTGCTTACACCACCATCATcacatacacagtaccagtcaaaggtttggaccaACTGAttcatttggactattttctacattgtagaataatagttaagacatcaaaactatgaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU404522 False 1783 lncRNA 0.50 2 46473595 46476951
TU404524 True 2348 lncRNA 0.52 2 46473595 46476951

Neighbor

gene id symbol gene type direction distance location
LOC110510408 hmgn3 coding upstream 720642 45733642 ~ 45752953 (+)
LOC118964488 NA coding upstream 1536392 44933784 ~ 44937203 (+)
nbas LOC104962557 coding upstream 1773191 44401316 ~ 44700404 (+)
ppp1r14c ppp1r14c coding upstream 2136617 44309473 ~ 44336978 (+)
myb myb coding upstream 2363327 44084616 ~ 44110268 (+)
LOC110521126 LOC105018054 coding downstream 69796 46546747 ~ 46575079 (+)
mapre3b LOC106591799 coding downstream 98222 46575173 ~ 46607810 (+)
agbl5 LOC106608376 coding downstream 217937 46694888 ~ 46745644 (+)
G356628 NA non-coding upstream 40232 46432981 ~ 46433363 (+)
G356617 NA non-coding upstream 57588 46415690 ~ 46416007 (+)
G356589 garem2 non-coding upstream 72989 46396569 ~ 46400606 (+)
G356588 NA non-coding upstream 78424 46394533 ~ 46395171 (+)
G356586 hadhb non-coding upstream 85342 46366226 ~ 46388253 (+)
G356702 NA non-coding downstream 115004 46591955 ~ 46592330 (+)
G356688 NA non-coding downstream 143850 46620801 ~ 46625417 (+)
G356713 NA non-coding downstream 155915 46632866 ~ 46633586 (+)
G356723 NA non-coding downstream 168566 46645517 ~ 46647811 (+)
G355763 enpp5 other upstream 774748 45640503 ~ 45698847 (+)
G355753 NA other upstream 849591 45620266 ~ 45624004 (+)
G355488 NA other upstream 1409569 45063613 ~ 45064026 (+)
G356693 NA other downstream 94604 46571555 ~ 46572865 (+)
G356728 NA other downstream 174134 46651085 ~ 46651564 (+)
G356789 NA other downstream 307329 46784280 ~ 46784753 (+)

Expression


Co-expression Network