G356754 (yo84)


Basic Information

Item Value
gene id G356754
gene name yo84
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 46750122 ~ 46755469 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU404724
gtagtgtatgaTGCATGGCGCGATGAGACCGAGGCTTTCTGCCAGACCACACACTCAAACAGctattatgagcccctcctttatagtagaatcatacaaccagaatctaaagacggtgacatcttgtggaagccctagtcctgtttggatttcttctcaggattttgcctgccatatgagttctgttttaCACAGacttctgagtgttttctatccaccagtaataataatatgcatatattcccatctgggaaagagtaggaggcagtttactctgggcacgccttttatccaaaagtgaaaatgctgccccctagccccaacaggttttaactccagaatcttcacaggtcctttgctgttgttctgggattgatttgcatttttctcaccaaagtacgttcatctctagaagacagaacacgtctcctccctgagcggtatgacggctgcgtggtcccatggtgtttatacttgcgtactattgtttgtacagttgaacgtggtaccttcttggctgatttctttggattttcccatgatgtcaagcaaagaggcactgagtttgaaggtaggcctggaaatacatccacaggtacacctccaattaactcaaatgatgtcaattagcctatcagaatcttctaaagccatgacatcattttctggaattttccaaatgtttaaaggcacagtcaacttagtgtatgtaaacttctgacccactggaattgtgatacagtgaattacaagtgaaataatctgtctgtaaactatttttggaaaaactacttgtgtcatgcacaaagtagatgtcctaaccgacttgccaaaactatagtttgttaacaagaaatggtGTGGGGggattgaaaaacgagttttaatgactccaacctaagtgtatgtaaatttccgacttcaactgtagatggaaaatagctgtccttgaaacagtcttgatatgttcgtcaaaagagagatcagggtaacACTGAGGACCtgcacagttttatttgagacgactgtacaaccatcaagattaattgtcagatccaacagaagatctctttgtttcttgggacctagaaatagcatctctgttttgtccaagtttaaaagtagaacatttgctgCTCTCCACTTCCTTatatctgaaacacaggcttccagggagggcaattttggggcttcaccatgtttcaacaaaatatacagctgtgtgtcgtccgcatagcagtgaaagttaacattatgtttccgaatgacatcaccaagaggtaaaatatatagtgaaaatcatagtggtcctaaaacgaaaccttgaggaacaccgaaacttacagttgatttgtcagaggacaaaccacgcacagagacaaactgatatctttccgacagacaAGACCTAAACCAggtcagaacttgtccgtgtagaccaatttgggtttccaatctctctaaaagaatgtggtgatccaTGGTATTAAATGCAGCACTAAagaggagcacgaggacagatgcagagcctcggtctgatgccattaaaaggtaatctaccaccttcacaagtgcagtctcagtgctatgatgggctctaaaaccagactgaagcatttcggaTACATTgttttgtcttcaggaaggcagtgagttactgcgcaacagctttttctaaaaaattttgtgaggaatgggagattcgatataggctgatagtttttatattttctgagTCAATGTTTGGCTTTTTTAAGAgaagctttattactgccacttttagtgagtttggtacacatccggtggacagagagccgtttattatgttcaacatatgagggccaagcacaggaagcagctctgtATCTGTGttcttcgtagctgtttacataccaccagaGTCAGAGGTTGGCACAGACAGCATTGAATGaactgtattccgccataagcaaacaccCGGAGGCGGCGCTCCTGGTAgcctgggactttaatgcagggaaacttaaatcccttttaccacatttccatcagcatgttaaatgtgcaaccagagggaaaataaatctggaccacctgtactccacacacagagaagcatatcaagctctccctcaccctccattttacaaatctgaccataattccattgtcctgattcctgcttacaagcacaaattaaagcaggaagcaccagtgactagatcagtaaaaaagtggtcagatgaagcagatgctaagctacaggactgatTTGCAGCACCGACTGGAATATGTcctgggattcctccaatggcattgaggagtatagcACATCAGTCATTCTATACTTCTGTATACGTCTgacccctctttggacactgtgttaactaacctccagatgagcttcaatgccatacaactctccttccatggcctccaactgctcttaaatgctagtaaaactaaatgcatgatcttcaaccgatccctgcccacacctgcccgcccgtccagcatcactactctggacggctctgacttagaatacgtggacaactacaaatacctaggtgtctggttagactgtaaacactccttccagactcacattattatctccaatccaaagttaaatctagaatcggcttcatatttcgcaaaaaagcctccttcactcatgctactaaacataccctcgtaaaactgactatcctaccgatcctagcctccaacactctactcagcaaattggatgcagtctatcacagtgccatccgttttgtcaccaaagccccatatattacccaccactgtgacctgtatgctctcattggctggccctcgcttcatattcgtcgccaaacccactggctccaggtcatctataagtcatcTATAaataaagctccgccttatctcagctcactggtcaccatagcaacacccacccgtagcacgcgctccagcaggtatatttcactggtcatccccagaACCAActcctctttggccgcctttccttccagttctctgctgccaatgactggaacgaattcaaaaatcactgaagctggagacttaaatCTCCCTTACTAACTTTAATCATCAGCTGTTAGAgaagcttacagatcactgcacctgtacacagcccatctgtaaatagcccaaccaactacctcatccccatattgtcatgtatttattcatgctcttttgcaccccagtctctctacttgcacatcatcatctgcacatctatcactccagtgttaatgctgaATTGTAAtcatttcgccactatggcctatttattgccttacctccctaatcttactacatttgcactcactgtatatatagttttattttgtgttattgtctCTAcgcttgtttgttccatgtgAAACTCTTTGTTggtgtttttgtcgcactgctttgctttatcttggccaggtcgcagatgtaaatgagaacttgttctcaactggcctacctggttaaataaaggttaaataaaaaaaaagaccgagcactcccccattctcatcgacggggctatagtggagcagtttgagagcttcaagctccctggtgtccacatcaccaacaaactatcatggtccaagcacaccaagacagtcatgaagcgggcacaacaaaacctatttccccctcaggagactgaaaagatttgccatgggtccacagatcctgaaaaggttttacagctgcaccatcgagagcatggttgcatcactacctggtgtggcaactgctcggcctccaaccgcaaggcactacagagtgtaatgcgaacagcccagtaaataccaggcggtgtcagaggaacgccctaaaaattgtcaaagactccagccaccccagtcatagactgttctctctgctgccgcacggcaagtgggaccggagtgccaagtctaggtccaagaggcttctaaacagcttctacacccaagccataagactcctgaagtCTAGTTAAATGGCtgcccagactattcacattgctgcatattcagcatttcactgtgaggtctactacacctgttgtattcggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctacctacacctgttctattcagcatttcactgtgaggtctgctacACCCGtcttattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctgctacacctgtcttattcagcatttcactgtaaggtctactacacctgttgtattcggcgaatgtgactaagacatacagtatatactcCCAGTCCGATGCTGAAAAAcgtcctcacagcatgatgctgccaccaacatgcttcaccgtagggaaggtgccaggtttcctccacacgcaacgcttggcattcaggccaaagagttcaatcttggtttcatcggaccagagaatcttatttctcatggtctgagagtcttaaggtgctttttggcaaattccaagcgggctttcatgtgccttttaccgaggagtggcttccatctgcccactctaccataaaggcctgattggcggagtgctgcagagatggttgtccttctggaaggttctcccatctccacagaggaactctgtcagagtgaccattgggttcttggtcacctccctgaccaaggcccttctcccccgattgctcagtttggccgggtggccagctctaggaagagtcttcatGGTTCtaaacgatggaggccactgtgttcttggggaccttcaatgctgcagaaatgttttggtacccttccccagatctgtgcctcgacacaatcctgtctctgagctctacggacaattccttcgaccttatggcttggtttttgctctgacatgcgctgtcaactgtgggacattatatagacaggtgtgtgtctttccaaatcctgtccaatcaattgaatttaccacaggcggactccaagttgtagaaacatcaaggatgatcaatggaaacagcatgcaccttagctcaattttgagtctcatagcaaagggtctgaatacttatgcaaataaaaagtaatacatttg

Function

NR:

description
ORF2 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU404724 True 5272 lncRNA 0.44 2 46750122 46755469

Neighbor

gene id symbol gene type direction distance location
agbl5 LOC106608376 coding upstream 4478 46694888 ~ 46745644 (+)
mapre3b LOC106591799 coding upstream 142317 46575173 ~ 46607810 (+)
LOC110521126 LOC105018054 coding upstream 175043 46546747 ~ 46575079 (+)
LOC110510408 hmgn3 coding upstream 997169 45733642 ~ 45752953 (+)
LOC118964488 NA coding upstream 1812919 44933784 ~ 44937203 (+)
G356733 NA non-coding upstream 11126 46664308 ~ 46738996 (+)
G356723 NA non-coding upstream 102311 46645517 ~ 46647811 (+)
G356713 NA non-coding upstream 116536 46632866 ~ 46633586 (+)
G356688 NA non-coding upstream 124705 46620801 ~ 46625417 (+)
G356795 NA non-coding downstream 46571 46802040 ~ 46802750 (+)
G356728 NA other upstream 98558 46651085 ~ 46651564 (+)
G356693 NA other upstream 177257 46571555 ~ 46572865 (+)
G356586 hadhb other upstream 376341 46366226 ~ 46388253 (+)
G356789 NA other downstream 28811 46784280 ~ 46784753 (+)

Expression


Co-expression Network