LOC110524922 (LOC106572882)


Basic Information

Item Value
gene id LOC110524922
gene name LOC106572882
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 296626 ~ 312598 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976552.1
TCGTGATTAGCACATTTCAACAGACTCAGGTGGCAGTCCTTGGTGAAGTTTGGCGCCAGGGTCAGATAGTTACACCGAGTCTGGTGGGTCTTGTTGTTTCACCACCTGTTGATTTTTATCGGGACTAATCATGTTGCCATTGGGGACACTGCGTAAACGCATCGAGCCAGTGGTCCTATGTGCCCAAATAGCGAGCGCGTTTTTCGACACCGGTTTGCAGATGGTGGTGAAAGAGCAATGCGCCATTGCGACTGATGCGCTTAATCCAACCCCCACCGAGGACAGCCGGCAGAAAGCTATGTCCAACTTTTACATGATATATAATATGCTGTCCAAATTCGTTCCGATCCTACCCGCCATTATCTTATCCAAGGTAGGTGACCTGGGGTACCGGAAGATCCCCATCGTGATCCCTCTGGTTGGTTACCTGGTCTCCAGAGTGGTCCTGCTCCTGGTCATAGTGATGGATCTCCCGATACAGGCTATGTTCGGCGGGGTGGTGGTCCACGGACTCAGCGGCGGGTTCTGCTCCTACTGGGCCGGGGTCATGGCCCTGGTGTCGCTCACCTCCACCGAGGAGGACCGCTCTCTCCACATGATGCAAATGGAGCTGGTCTATGGCATAGCTGGACTCATCGGTAGTTTGGTGTCTGGGCACCTCTTCCAGTTGTACAGTGTGGACTTTAAACAGGGGACAGTGTTAGTGAGCCTGAGTGTCTTCCTCTACTTTGTGTGTCTCGTCTACACAATGTTTATCTTTCTAATGCCAACTGTCTCGCCAAGCGCACAAGAGCGCAACGAGACCAACGGTATCGACACGCAATATTCCAAGAATATTCTGAACATTCTGCTTCTTTTTGCGGGTGGGATTCTATTTGACGTGGCGgtgggaggaggaatggagataCTGGTGACCTTTGAGATGAAGGAGCCACTGAACTGGAACGCCACCCAGGTAGGTTACGGTAACGCCGCCGGGTTCCTGGTCTTCCTGACGAGCTTCCTGGGTGTCATGGTAATGTCCAGATGGGTGAGTGACGTCACCCTCATCATCATCGGCATGGTGTCCTTCGCTGCCGGGATCTACTTCATGGCCTTCGTCACTGCAACATACATGTTCTATCTGGCACGAGCTCTCACACTGTTCGCCCTGATTCCCATGCCCACCATCCGTGCCCTACTGTCTAAACAGGTCAACGGCTCGTCATATGGGATCACCCTCATCTCACTGCAGCTGTCCTTTAAGATCGCCAGCCTGGCCTACACTCCCATCTACACCAAGGTGTACCAGGCTACGCTGGACTGGTTTCCCGGGTTCGTCTTCACCCTGTCCAGCATCTTCACCGTCCTCGCCACCATACCTGTCAGCGTGGTGGGCTGCAGAGCTGGCCGTGCTGACGGTTATGAAAGGATCCTGGGGGACTGAGGGTGGTGAGGTCATCGTGTCACCACGTCAGGCTATGAGACAATACTGGGGGGGTACTGTGAATGTTGGGGAAACTGCACTATAACGAGCCTTTGATTGAATCCCAGCCTGAGACTGAGCCAATGGACATGAACTGACGGGGTATTAATGAGAAGAGTGTTGACATTCTCCAGAGGTtgactacccatggccttaatatagaataatcatagactgatccactgcctactacccatggccttaatatagaataatcata

Function

NR:

description
PREDICTED: thymic stromal cotransporter homolog

GO: NA

KEGG:

id description
K14614 SLC46A2; MFS transporter, PCFT/HCP family, solute carrier family 46 (thymic stromal cotransporter), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976552.1 True 1685 mRNA 0.52 6 296626 312598

Neighbor

gene id symbol gene type direction distance location
LOC110523064 LOC106572881 coding upstream 11493 224811 ~ 285133 (+)
palm2akap2 LOC106568584 coding upstream 110287 89048 ~ 186339 (+)
LOC110523070 inip coding downstream 98163 410761 ~ 416534 (+)
LOC110524924 ptbp3 coding downstream 169827 482425 ~ 599279 (+)
LOC110523098 NA coding downstream 420413 733011 ~ 737553 (+)
LOC110523075 hook3 coding downstream 909065 1221663 ~ 1298618 (+)
LOC118964551 NA coding downstream 915019 1227617 ~ 1228033 (+)
G357181 NA non-coding upstream 2392 293999 ~ 294234 (+)
G357180 NA non-coding upstream 3012 293360 ~ 293614 (+)
G357172 NA non-coding upstream 33606 262805 ~ 263020 (+)
G357167 NA non-coding upstream 45022 251057 ~ 251604 (+)
G357152 NA non-coding upstream 66780 229625 ~ 229846 (+)
G357325 NA non-coding downstream 27063 339661 ~ 340520 (+)
G357330 NA non-coding downstream 30683 343281 ~ 345524 (+)
G357352 NA non-coding downstream 80716 393314 ~ 482303 (+)
G357353 NA non-coding downstream 86198 398796 ~ 401594 (+)
G357329 NA non-coding downstream 89136 401734 ~ 420783 (+)
G357136 NA other upstream 94984 200717 ~ 201642 (+)
G357564 NA other downstream 626470 939068 ~ 939873 (+)
G357565 NA other downstream 627637 940235 ~ 940741 (+)
G358042 NA other downstream 1075797 1388395 ~ 1390468 (+)
G358076 NA other downstream 1162197 1474795 ~ 1475734 (+)

Expression


Co-expression Network