LOC110523070 (inip)


Basic Information

Item Value
gene id LOC110523070
gene name inip
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 410761 ~ 416534 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051596.1
GTGGAGTAGACTTGGGCACACAGGTTTGAATGCCACATTGTGGATGATAGGGAGAAATGAaacagGCTGCAGTCACTTCCTCTGACATGGCCTCGCCTGCACCTGGAGCGGGATTCCAGAACAAGAACCGTGTTGCCATTTTGGCTGAATTGGACAAGGAGAAAAGACGCTTGATACAGAACTCCTCCATGAATAACCCTGGAGCCAGCATCCCTCTCTCCAGACCAGCCCTGAATAAAGACTTCAGAGACCACGCGGAGCAGCAGCACATCGCTGCCCAGCAGAAAGCAGCTCTGCAGCATGCCCATGCTCACTCTTCTGGATTCTTCATCACTCAAGACTCGTCCTTCGGGAACCTGATCCTCCCGGTGCTGCCCCGTCTAGACCCACCTCCACCAGCAGAATAACAGAACCTTAAGAAGAAAACACCCAACGGCTAAAAGCAGCAGGTGGTTTACAGATCACCTGTTGGGTGTTGACGAATGGCAGCGGGGCCACAGATCACCTGTTGGGTGTTGACGAATGGCAGCGGGGCCACAGATCACCTGTTGGGTGTTGACGAATGGCAGCGGACCACAGATCACGTGTTGACGAATGGCAGCGGGGCCACAGATCACCTGTTGGGTGTTGACGAATGGCAGCGGACCACAGATCGACCATTCGGATTCTGTTGAATTGCCACTGTTCGTCGACACACAGCACATCGTTTAGTGCACAAGGCCGACGTTCGTTTCTGGTGTTTTCTCCACGAACAGACATAGTGACTTTGTTACAAGGACTTTCTGAACAAGGTCTTGGATTGTTTGTTGAAGCTAAGGGTCATGTTATTTCTGTCTATTTTTGGTGCACCGTACATCATGTGGTTTTGAAAGACAAATGTCATTTTTCTAACATTTTTTTATAAATGGAAAAATAATCAAATAAAGATCAAGTCAACAACAA
>XM_036976554.1
GGATGATAGGGAGAAATGAaacagGCTGCAGTCACTTCCTCTGACATGGCCTCGCCTGCACCTGGAGCGGGATTCCAGAACAAGAACCGTGTTGCCATTTTGGCTGAATTGGACAAGGAGAAAAGACGCTTGATACAGAACTCCTCCATGAATAACCCTGGAGCCAGCATCCCTCTCTCCAGACCAGCCCTGAATAAAGACTTCAGAGACCACGCGGAGCAGCAGCACATCGCTGCCCAGCAGAAAGCAGCTCTGCAGCATGCCCATGCTCACTCTTCTGGATTCTTCATCACTCAAGACTCGTCCTTCGGGAACCTGATCCTCCCGGTGCTGCCCCGTCTAGACCCACCTCCACCAGCAGAATAACAGAACCTTAAGAAGAAAACACCCAACGGCTAAAAGCAGCAGGTGGTTTACAGATCACCTGTTGGGTGTTGACGAATGGCAGCGGGGCCACAGATCACCTGTTGGGTGTTGACGAATGGCAGCGGGGCCACAGATCACCTGTTGGGTGTTGACGAATGGCAGCGGGGCCACAGATCACCTGTTGGGTGTTGACGAATGGCAGCGGACCACAGATCACGTGTTGACGAATGGCAGCGGGGCCACAGATCACCTGTTGGGTGTTGACGAATGGCAGCGGACCACAGATCGACCATTCGGATTCTGTTGAATTGCCACTGTTCGTCGACACACAGCACATCGTTTAGTGCACAAGGCCGACGTTCGTTTCTGGTGTTTTCTCCACGAACAGACATAGTGACTTTGTTACAAGGACTTTCTGAACAAGGTCTTGGATTGTTTGTTGAAGCTAAGGGTCATGTTATTTCTGTCTATTTTTGGTGCACCGTACATCATGTGGTTTTGAAAGACAAATGTCATTTTTCTAACATTTTTTTATAAATGGAAAAATAATCAAATAAAGATCAAGTCAACAACAA
>XM_036976555.1
TTGGATGCGATCCGCCAACCCAatcacaaagaagaagaagacgaagaagaaggaGCAAACATTTCGCTGCGCCTGCAGATCTGTGTACTCGACCAAATAAACCTTGATTTGATCGATAGTCCCCAACTTGACAAAAACGATCCGCTCGAACGCGCCCTTAGTTGAAGTGGTCACGTtactttctttttttgttgatacaCGAGTTCACCAGAGAAGTAAAACGCTGCAGTCACTTCCTCTGACATGGCCTCGCCTGCACCTGGAGCGGGATTCCAGAACAAGAACCGTGTTGCCATTTTGGCTGAATTGGACAAGGAGAAAAGACGCTTGATACAGAACTCCTCCATGAATAACCCTGGAGCCAGCATCCCTCTCTCCAGACCAGCCCTGAATAAAGACTTCAGAGACCACGCGGAGCAGCAGCACATCGCTGCCCAGCAGAAAGCAGCTCTGCAGCATGCCCATGCTCACTCTTCTGGATTCTTCATCACTCAAGACTCGTCCTTCGGGAACCTGATCCTCCCGGTGCTGCCCCGTCTAGACCCACCTCCACCAGCAGAATAACAGAACCTTAAGAAGAAAACACCCAACGGCTAAAAGCAGCAGGTGGTTTACAGATCACCTGTTGGGTGTTGACGAATGGCAGCGGGGCCACAGATCACCTGTTGGGTGTTGACGAATGGCAGCGGGGCCACAGATCACCTGTTGGGTGTTGACGAATGGCAGCGGGGCCACAGATCACCTGTTGGGTGTTGACGAATGGCAGCGGACCACAGATCACGTGTTGACGAATGGCAGCGGGGCCACAGATCACCTGTTGGGTGTTGACGAATGGCAGCGGACCACAGATCGACCATTCGGATTCTGTTGAATTGCCACTGTTCGTCGACACACAGCACATCGTTTAGTGCACAAGGCCGACGTTCGTTTCTGGTGTTTTCTCCACGAACAGACATAGTGACTTTGTTACAAGGACTTTCTGAACAAGGTCTTGGATTGTTTGTTGAAGCTAAGGGTCATGTTATTTCTGTCTATTTTTGGTGCACCGTACATCATGTGGTTTTGAAAGACAAATGTCATTTTTCTAACATTTTTTTATAAATGGAAAAATAATCAAATAAAGATCAAGTCAACAACAA
>XM_036976556.1
TTGGATGCGATCCGCCAACCCAatcacaaagaagaagaagacgaagaagaaggaGCAAACATTTCGCTGCGCCTGCAGATCTGTGTACTCGACCAAATAAACCTTGATTTGATCGATAGTCCCCAACTTGACAAAAACGATCCGCTCGAACGCGCCCTTAGTTGAAGTGGTCACGTtactttctttttttgttgatacaCGAGTTCACCAGAGAAGCTGCAGTCACTTCCTCTGACATGGCCTCGCCTGCACCTGGAGCGGGATTCCAGAACAAGAACCGTGTTGCCATTTTGGCTGAATTGGACAAGGAGAAAAGACGCTTGATACAGAACTCCTCCATGAATAACCCTGGAGCCAGCATCCCTCTCTCCAGACCAGCCCTGAATAAAGACTTCAGAGACCACGCGGAGCAGCAGCACATCGCTGCCCAGCAGAAAGCAGCTCTGCAGCATGCCCATGCTCACTCTTCTGGATTCTTCATCACTCAAGACTCGTCCTTCGGGAACCTGATCCTCCCGGTGCTGCCCCGTCTAGACCCACCTCCACCAGCAGAATAACAGAACCTTAAGAAGAAAACACCCAACGGCTAAAAGCAGCAGGTGGTTTACAGATCACCTGTTGGGTGTTGACGAATGGCAGCGGGGCCACAGATCACCTGTTGGGTGTTGACGAATGGCAGCGGGGCCACAGATCACCTGTTGGGTGTTGACGAATGGCAGCGGGGCCACAGATCACCTGTTGGGTGTTGACGAATGGCAGCGGACCACAGATCACGTGTTGACGAATGGCAGCGGGGCCACAGATCACCTGTTGGGTGTTGACGAATGGCAGCGGACCACAGATCGACCATTCGGATTCTGTTGAATTGCCACTGTTCGTCGACACACAGCACATCGTTTAGTGCACAAGGCCGACGTTCGTTTCTGGTGTTTTCTCCACGAACAGACATAGTGACTTTGTTACAAGGACTTTCTGAACAAGGTCTTGGATTGTTTGTTGAAGCTAAGGGTCATGTTATTTCTGTCTATTTTTGGTGCACCGTACATCATGTGGTTTTGAAAGACAAATGTCATTTTTCTAACATTTTTTTATAAATGGAAAAATAATCAAATAAAGATCAAGTCAACAACAA
>TU405615
actttctttttttgttgatacaCGAGTTCACCAGAGAAGTAAAACGTAGTTATGTTTTAGCGGCTTTGTTTCTGTATATAgcaacacaaatatatatatttttacgtaGAACTCAAGCATTCTATTCTTTGTAATAGTTATGTAGCTATTTGAACGAGCGGTGAACATCTGCTTATCCTTGGTCGATTTGTCCCAgtgctaatgctaactagctagcacagCGCTCTCTCTATCTTTTGTGTTGTTTAGGCTGCAGTCACTTCCTCTGACATGGCCTCGCCTGCACCTGGAGCGGGATTCCAGAACAAGAACCGTGTTGCCATTTTGGCTGAATTGGACAAGGAGAAAAGACGCTTGATACAGAACTCCTCCATGAATAACCCTGGAGCCAGCATCCCTCTCTCCAGACCAGCCCTGAATAAAGACTTCAGAGACCACGCGGAGCAGCAGCACATCGCTGCCCAGCAGAAAGCAGCTCTGCAGCATGCCCATGCTCACTCTTCTGGATTCTTCATCACTCAAGACTCGTCCTTCGGGAACCTGATCCTCCCGGTGCTGCCCCGTCTAGACCCACCTCCACCAGCAGAATAACAGAACCTTAAGAAGAAAACACCCAACGGCTAAAAGCAGCAGGTGGTTTACAGATCACCTGTTGGGTGTTGACGAATGGCAGCGGGGCCACAGATCACCTGTTGGGTGTTGACGAATGGCAGCGGGGCCACAGATCACCTGTTGGGTGTTGACGAATGGCAGCGGGGCCACAGATCACCTGTTGGGTGTTGACGAATGGCAGCGGACCACAGATCACGTGTTGACGAATGGCAGCGGGGCCACAGATCACCTGTTGGGTGTTGACGAATGGCAGCGGACCACAGATCGACCATTCGGATTCTGTTGAATTGCCACTGTTCGTCGACACACAGCACATCGTTTAGTGCACAAGGCCGACGTTCGTTTCTGGTGTTTTCTCCACGAACAGACATAGTGACTTTGTTACAAGGACTTTCTGAACAAGGTCTTGGATTGTTTGTTGAAGCTAAGGGTCATGTTATTTCTGTCTATTTTTGGTGCACCG
>TU405616
actttctttttttgttgatacaCGAGTTCACCAGAGAAGTAAAACGTAGTTATGTTTTAGCGGCTTTGTTTCTGTATATAgcaacacaaatatatatatttttacgtaGAACTCAAGCATTCTATTCTTTGTAATAGTTATGTAGCTATTTGAACGAGCGGTGAACATCTGCTTATCCTTGGTCGATTTGTCCCAgtgctaatgctaactagctagcacagCGCTCTCTCTATCTTTTGTGTTGTTTAGGCTGCAGTCACTTCCTCTGACATGGCCTCGCCTGCACCTGGAGCGGGATTCCAGAACAAGAACCGTGTTGCCATTTTGGCTGAATTGGACAAGGAGAAAAGACGCTTGATACAGAACTCCTCCATGAATAACCCTGGAGCCAGCATCCCTCTCTCCAGACCAGCCCTGAATAAAGACTTCAGAGACCACGCGGAGCAGCAGCACATCGCTGCCCAGCAGAAAGCAGCTCTGCAGCATGCCCATGCTCACTCTTCTGGATTCTTCATCACTCAAGACTCGTCCTTCGGGAACCTGATCCTCCCGGTGCTGCCCCGTCTAGACCCACCTCCACCAGCAGAATAACAGAACCTTAAGAAGAAAACACCCAACGGCTAAAAGCAGCAGGTGGTTTACAGATCACCTGTTGGGTGTTGACGAATGGCAGCGGGGCCACAGATCACCTGTTGGGTGTTGACGAATGGCAGCGGGGCCACAGATCACCTGTTGGGTGTTGACGAATGGCAGCGGGGCCACAGATCACCTGTTGGGTGTTGACGAATGGCAGCGGACCACAGATCGACCATTCGGATTCTGTTGAATTGCCACTGTTCGTCGACACACAGCACATCGTTTAGTGCACAAGGCCGACGTTCGTTTCTGGTGTTTTCTCCACGAACAGACATAGTGACTTTGTTACAAGGACTTTCTGAACAAGGTCTTGGATTGTTTGTTGAAGCTAAGGGTCATGTTATTTCTGTCTATTTTTGGTGCACCG
>TU405617
actttctttttttgttgatacaCGAGTTCACCAGAGAAGTAAAACGTAGTTATGTTTTAGCGGCTTTGTTTCTGTATATAgcaacacaaatatatatatttttacgtaGAACTCAAGCATTCTATTCTTTGTAATAGTTATGTAGCTATTTGAACGAGCGGTGAACATCTGCTTATCCTTGGTCGATTTGTCCCAgtgctaatgctaactagctagcacagCGCTCTCTCTATCTTTTGTGTTGTTTAGGCTGCAGTCACTTCCTCTGACATGGCCTCGCCTGCACCTGGAGCGGGATTCCAGAACAAGAACCGTGTTGCCATTTTGGCTGAATTGGACAAGGAGAAAAGACGCTTGATACAGAACTCCTCCATGAATAACCCTGGAGCCAGCATCCCTCTCTCCAGACCAGCCCTGAATAAAGACTTCAGAGACCACGCGGAGCAGCAGCACATCGCTGCCCAGCAGAAAGCAGCTCTGCAGCATGCCCATGCTCACTCTTCTGGATTCTTCATCACTCAAGACTCGTCCTTCGGGAACCTGATCCTCCCGGTGCTGCCCCGTCTAGACCCACCTCCACCAGCAGAATAACAGAACCTTAAGAAGAAAACACCCAACGGCTAAAAGCAGCAGGTGGTTTACAGATCACCTGTTGGGTGTTGACGAATGGCAGCGGGGCCACAGATCACCTGTTGGGTGTTGACGAATGGCAGCGGACCACAGATCGACCATTCGGATTCTGTTGAATTGCCACTGTTCGTCGACACACAGCACATCGTTTAGTGCACAAGGCCGACGTTCGTTTCTGGTGTTTTCTCCACGAACAGACATAGTGACTTTGTTACAAGGACTTTCTGAACAAGGTCTTGGATTGTTTGTTGAAGCTAAGGGTCATGTTATTTCTGTCTATTTTTGGTGCACCGTACATCATGTGGTTTTGAAAGACAAATGTCATTTTTCTAACATTTTTTTATAAATGGAAAAATAATCAAATAAAGATCAAGTCAAC
>TU405618
actttctttttttgttgatacaCGAGTTCACCAGAGAAGTAAAACGTAGTTATGTTTTAGCGGCTTTGTTTCTGTATATAgcaacacaaatatatatatttttacgtaGAACTCAAGCATTCTATTCTTTGTAATAGTTATGTAGCTATTTGAACGAGCGGTGAACATCTGCTTATCCTTGGTCGATTTGTCCCAgtgctaatgctaactagctagcacagCGCTCTCTCTATCTTTTGTGTTGTTTAGGCTGCAGTCACTTCCTCTGACATGGCCTCGCCTGCACCTGGAGCGGGATTCCAGAACAAGAACCGTGTTGCCATTTTGGCTGAATTGGACAAGGAGAAAAGACGCTTGATACAGAACTCCTCCATGAATAACCCTGGAGCCAGCATCCCTCTCTCCAGACCAGCCCTGAATAAAGACTTCAGAGACCACGCGGAGCAGCAGCACATCGCTGCCCAGCAGAAAGCAGCTCTGCAGCATGCCCATGCTCACTCTTCTGGATTCTTCATCACTCAAGACTCGTCCTTCGGGAACCTGATCCTCCCGGTGCTGCCCCGTCTAGACCCACCTCCACCAGCAGAATAACAGAACCTTAAGAAGAAAACACCCAACGGCTAAAAGCAGCAGGTGGTTTACAGATCACCTGTTGGGTGTTGACGAATGGCAGCGGGGCCACAGATCACCTGTTGGGTGTTGACGAATGGCAGCGGGGCCACAGATCACCTGTTGGGTGTTGACGAATGGCAGCGGACCACAGATCGACCATTCGGATTCTGTTGAATTGCCACTGTTCGTCGACACACAGCACATCGTTTAGTGCACAAGGCCGACGTTCGTTTCTGGTGTTTTCTCCACGAACAGACATAGTGACTTTGTTACAAGGACTTTCTGAACAAGGTCTTGGATTGTTTGTTGAAGCTAAGGGTCATGTTATTTCTGTCTATTTTTGGTGCACCG

Function

symbol description
inip Predicted to be involved in DNA repair and response to ionizing radiation. Predicted to act upstream of or within cellular response to DNA damage stimulus. Predicted to be located in nucleus. Predicted to be part of SOSS complex. Predicted to be active in nucleoplasm. Orthologous to human INIP (INTS3 and NABP interacting protein).

NR:

description
PREDICTED: SOSS complex subunit C isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051596.1 False 942 mRNA 0.49 6 410761 416534
XM_036976554.1 False 941 mRNA 0.50 5 410802 416534
XM_036976555.1 False 1139 mRNA 0.49 5 411112 416534
XM_036976556.1 False 1132 mRNA 0.49 5 411112 416534
TU405615 False 1075 TUCP 0.49 4 411289 416443
TU405616 False 1003 TUCP 0.48 5 411289 416443
TU405617 False 1009 TUCP 0.45 5 411289 416529
TU405618 True 963 TUCP 0.48 5 411289 416443

Neighbor

gene id symbol gene type direction distance location
LOC110524922 LOC106572882 coding upstream 98163 296626 ~ 312598 (+)
LOC110523064 LOC106572881 coding upstream 125628 224811 ~ 285133 (+)
palm2akap2 LOC106568584 coding upstream 224422 89048 ~ 186339 (+)
LOC110524924 ptbp3 coding downstream 65891 482425 ~ 599279 (+)
LOC110523098 NA coding downstream 316477 733011 ~ 737553 (+)
LOC110523075 hook3 coding downstream 805129 1221663 ~ 1298618 (+)
LOC118964551 NA coding downstream 811083 1227617 ~ 1228033 (+)
LOC118964548 NA coding downstream 811553 1228087 ~ 1232244 (+)
G357353 NA non-coding upstream 9167 398796 ~ 401594 (+)
G357330 NA non-coding upstream 65237 343281 ~ 345524 (+)
G357325 NA non-coding upstream 70241 339661 ~ 340520 (+)
G357181 NA non-coding upstream 116527 293999 ~ 294234 (+)
G357180 NA non-coding upstream 117147 293360 ~ 293614 (+)
G357332 LOC106572866 non-coding downstream 5309 421843 ~ 424125 (+)
G357400 NA non-coding downstream 117152 533686 ~ 534044 (+)
G357401 NA non-coding downstream 132404 548938 ~ 565947 (+)
G357403 NA non-coding downstream 159101 575635 ~ 576663 (+)
G357419 NA non-coding downstream 212058 628592 ~ 629232 (+)
G357136 NA other upstream 209119 200717 ~ 201642 (+)
G357564 NA other downstream 522534 939068 ~ 939873 (+)
G357565 NA other downstream 523701 940235 ~ 940741 (+)
G358042 NA other downstream 971861 1388395 ~ 1390468 (+)
G358076 NA other downstream 1058261 1474795 ~ 1475734 (+)
LOC110523096 NA other downstream 1483829 1897358 ~ 1904914 (+)

Expression


Co-expression Network