LOC110523078 (LOC106572764)


Basic Information

Item Value
gene id LOC110523078
gene name LOC106572764
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 636428 ~ 682551 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976567.1
AGGACTCGAGGTCTTTTTTTGAGTCAGAAGACTACTGTTGTCATGGGCGGAAGTGCCGTACCCCGCCCAGTTCGTACCGTATGCGACGTTTTGGAGCAGTCTGTACCTCGGTGATTCGCTCACCAGTCTGCGTGGGTATTTACACCCGTGGTGTAGCTACAACAACAAGGCGCAGACATGGACCTTGTGGATCTTGCCATGCAAGGGCTCTCCGTCTTTGGATTCATTCTTTTTCTCGTCCTCTGGTTTATGCATTTCATGTCCATCATCTATGTccGACTCTGTCTCAATAAGAAGAGCCCTGACAAGCAGCCCTACAGTAAGCTGTCGGGGGTCTCTCTACTGAAGCCTCTGAAAGGAGTAGACCCCAACCTCATCAATAACCTGGAGACTTTCTTTGAGCTCGACTACCCCACGTATGAGATCCTGTTATGTGTGCAGGACTATGACGACCCAGCCGTTGATGTGTGTAAAAAGCTCCTGGGCAAATATCCCAACGTTGATGCCAGGTTGTTTATAGGAGGGAAGAAGGTTGGCATCAACCCAAAGATTAATAACCTGATGCCAGGTTATGAGGGGGCAAAGCATGGCCTGGTGTGGATTTGCGACAGCGGAATACGAGTGAAACCGGACACCCTGACGGATATGGCCTATCAGATGACGGAGAAGGTGGGGTTAGTCCATGGCCTTCCCTACGTGGCCGACAGACAGGGCTTCGCTGCTACACTAGAACAGGTGTATTTTGGCACGTCCCACCCGCGCTCCTACATCTCAGCCAACGTGACGGGTATTAAGTGTGTGACAGGAATGTCCTGTCTGATGAGAAAAGATATCCTGGACCAGGCTGGAGGGCTGATCGCCTTCGCTCAATACATCGCTGAGGACTACTTCATGGCGAAGGCTATCGCTGACAGGGGATGGAAATTCTCCATGGCAACACAGGTAGCCATGCAGAACTCTGGGTCCTATTCGATTGCTCAGTTCCAGTCCCGAATGATCAGATGGGCCAAGCTTCGTATCAACATGCTCCCCGCCACCATCTGTGAGCCCATCTCAGAGTGTTTCCTAGCCAGCCTGATCATTGGCTGGGCCGCGCATCACGTGTTCCACTGGGATATTATGGTCTTCTTCATGTGCCACTGTCTGGCGTGGTTCATCTCTGACTACATCCAGCTCCGAGGagttcagGGCGGTGCGCCGGCCTTCTCCAAACTGGACTACGCTGTTGCCTGGTTCATCAGAGAGTCCATGACCATCCAGATCTTTCTATCGGCCCTGTGGGATCCCACCATCAGCTGGAGAACGGGGCGCTACAGGTTACGATGCGGAGGTACGGCCGATGAGATCCTGGACGTATAGCTACCTGCATGAGTCCCACCTACAGGGACAATACCCTGGATCCAATCACCCCCAGAGACAATACCAGACACAGACTGAACCGATTTCCcaggtggcaccctattcccttcatagtgcactttCTGACCCGGGCCCACACTTGCCCGTACATTCTGCTCTgctcaacagtagtggactatttTAAGGaatatggtacagtcagggacgcGGCCAAAGAGATGGTGACATTGAGAAGAAGAAAGAAACAGCTATGGAATCATCCAAAGTGTTGGCTGTTTTTAACCTGTGTGTTAAAATGTTTTAATTCTGTAGGTTACTGGTGCTCTTCTTTCCTGTTTTTAATTTAAAAACTCTTGCTTGGACTATTCTCCAATAGGGAGCCCGGGCCCATGGCAGGATAGaagggatgtgtcccaaatgcaccctgttccctatatagtgcactacttttgaccagagccctatgggccctataaagggaattagggtgccatttgtaaaTAGCGTTACTCTCTTCAGCCAGTCTTTGAGGATAAGATGTGCACTTCCTACAGTAAGCTTCACTGGGCTATCATTAATATGTTGGTACAATATCGCTAGGTCTCCAGCAGCACTAACTCTAGAATAAAATCCTTCTCCGCTGactttttgtttttataaatatGAGACCTACTGAAAGCTGAA

Function

NR:

description
ceramide glucosyltransferase

GO:

id name namespace
GO:0006687 glycosphingolipid metabolic process biological_process
GO:0008120 ceramide glucosyltransferase activity molecular_function

KEGG:

id description
K00720 UGCG; ceramide glucosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976567.1 True 2043 mRNA 0.50 9 636428 682551

Neighbor

gene id symbol gene type direction distance location
LOC118964546 NA coding downstream 31319 603412 ~ 605109 (-)
LOC110523071 LOC106572866 coding downstream 178932 418741 ~ 457496 (-)
LOC110523069 snx30 coding downstream 233490 344750 ~ 402938 (-)
LOC110523080 LOC106572757 coding upstream 20760 703311 ~ 716419 (-)
ythdc1 ythdc1 coding upstream 42033 724581 ~ 759382 (-)
fktn fktn coding upstream 107814 787758 ~ 810394 (-)
LOC110523091 fsd1l coding upstream 138804 821355 ~ 910446 (-)
LOC110523076 LOC106572700 coding upstream 228884 911435 ~ 917121 (-)
G357750 NA non-coding downstream 2593 630965 ~ 633835 (-)
G357770 NA non-coding downstream 8781 626948 ~ 627647 (-)
G357763 NA non-coding downstream 23084 612533 ~ 613344 (-)
G357757 NA non-coding downstream 35145 598312 ~ 601283 (-)
G357745 LOC107744247 non-coding downstream 43283 591094 ~ 593145 (-)
G357791 NA non-coding upstream 6434 688985 ~ 689396 (-)
G357794 NA non-coding upstream 21593 704144 ~ 709667 (-)
G357795 NA non-coding upstream 22099 704650 ~ 707571 (-)
G357753 NA non-coding upstream 38065 720616 ~ 723307 (-)
G357808 NA non-coding upstream 45057 727608 ~ 728484 (-)
G357278 NA other downstream 391404 244749 ~ 245024 (-)
G357258 NA other downstream 427087 207105 ~ 209341 (-)
G357257 NA other downstream 443261 190519 ~ 193167 (-)
G357751 NA other upstream 8260 690811 ~ 691698 (-)
G357797 NA other upstream 134603 817154 ~ 818747 (-)
G358126 NA other upstream 612977 1295528 ~ 1298651 (-)
G358446 NA other upstream 1162273 1834553 ~ 1893316 (-)

Expression

LOC110523078(LOC106572764) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
End of interactive chart.

LOC110523078(LOC106572764) Expression in each Bioproject

Bar chart with 21 bars.
LOC110523078(LOC106572764) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Co-expression Network