ythdc1 (ythdc1)


Basic Information

Item Value
gene id ythdc1
gene name ythdc1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 724581 ~ 759382 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976569.1
actttgtggctgtggtaacgacCCTTTGCAGCAGGAGGAGGGATGCAGTCATCCGCCATTTCAGCTGCTACGATGAGACCTACTTCCAGTAAACATTGACGAGGgaaccatccatttaccacattGTAGATGTTGTAGTTAGATATAGAGCAACTATTAGGTATAGGGCAACGATTAGGTATAGGGCAACTATTAGGCATAGGGCAACCGTGAGAGGAGACAAAACGAGTCCTCTAAAGGTTTGCGGAAAGCAGGGAAAGGGGCGGAAGATGGCGGTCGACAGACGAGACGACAAAGAGGGAGAGCTCAACGTGCTGGATGACATCCTCACCGAGGCCCCGGACCAGGATGACGAGCTCTATAACCCTGAGAGTGAACAGCACGTCAACCAGAAAAAAGGATCTAAGAGGAAGAATGACCGAGGGGATGACCACGAGCTGAAACGCCTCCGGGCCTCGGCTCACACCACCAGACAGGCCGCTAAAAGATCTGCCCCCTCGGCTGGCGGGAAGAAACTGGTCAACCTCAGGGGGGTGCGGCACCCCTCCGAATACAAGACCGAAGATTATTACGACGACCGGAAAACCCATTCCATCCGAGCTGGTGGGGCGCAGAGGGGGGACCCTCCCAAAGCAGCCCACCTTGACAAGCCTCTGGGCCGCAggagagagccagacagacagaggatcAAGCCCCTCATGCCTGAGCTAACCACAGAGAAGCTGATGCGTCCCAGTGAGGGGAGTGTTGGCAGGGTCAGCACCTCCTCCAaggaagaggcagaagaggaggCATCAGACCAGGAGACTGGCAGCACGGCTGAGTCCTCCGAGGGAGACCGATCCAacatggagggagaagaggtgatggaggaggaagaagaggaggaggaggagggagagaagggcccagaggaagacgaggaagaggaggaagaagagtatGAACAGGAGGAAGGGGATCAGAGAGTGGTGAACGAACCGCCGGATTACGACACTCGCAGCGAAGCCAGCGACTCCCAGTCTGATTCAGTGTCGTTCTCTGAGGGGGAGTCGGTTCACTCTGGGTCTGGATCTGACGCCTCAGGTTCTGAGAAGAAGCATGAGAAGCTATCCTCCTCTGTTCGAGCCGTCCGCAAGGATCAGAGCAGCAAGCTGAAGTACATCCTACGAGACGCACGCTTCTTCCTGATCAAGAGCAACAACCATGAGAACGTCTCCCTGGCCAAGGCTAAGGGAGTGTGGTCCACTCTGCCTGTGAACGAGAAGAAGCTGAACGCTGCCTTCCGTTCTGCCCGCAGCGTCATCCTGGTCTTCTCAGTCAGGGAGAGTGGAAAGTTCCAAGGTTTCGCCAGGCTGTCCTCGGAGTCCCATCATGGAGGGTCTCCCATCCACTGGGTCCTGCCTGCTGGGATGAACGCCAAGATGCTGGGCGGGGTGTTCAAGATCCACTGGATCTGCAGACGGGAGTTACCGTTCACTAAAACGGCTCACCTTTCCAACCCGTGGAACGAACACAAGCCTGTAAAGATCGGCCGAGATGGACAGGAGATCGAACCAGGGTGTGGGATGCAGCTGTGCATGCTGTTCCCCCAGGACGAGAGCATTGACTTGTATCAAGTTATTCATAAAATGCGACACAAGCGGAGGATGCCTTCGGAGCCGCGTTCTCGAGGACGCCCGCCGCACAGAGAACCCGCCCGAGGCGACCTGGGAAGGCGTCGGCCCGAGGAATATGACATTCACAACAGGAAACGCCCAAGGATTGACTATCCAGCCGAGTTCCCACAGAGACCAGGCTTTATGCCAGTTCCACGTAACCCACCAGTTGACCGGCGCTTCCCAACTGGAGTAAGAAGAGATGTGTTTCTCAATGGGTCCTACAACGATTACATGAGAGAGTTCCACCACACCATTGGACCGCCTCCTCCTTGGCAAGGAATGGCACCGTACCCTGGGATGGAGCAGCCACCTCACCACCCGTTCTACCAGCACCATCCTCCACCTCCCCAGGCACATCCCCCGTACACTGGGCACCACCCTGTACCACACGACGCCCGCTTCAGGGAGAAGAGAGTCGTACGCTCCTTCAGCTCTACCCTGcatgaCTATGACATGCGGGTGGATGACTTCCTGAGACGGACCCAGGCCGTGGTGACAGGTCGCCGCAGCCGCCCCAGAGAACGAGACCGGCAGAGGGAGCGGGAACGGCCCCGGGATGCCCGCCGGGACCGCGACAGAGACCGTGGACGCGAAcgtgaccgagagagagaccggatcagagacagggagaaggagagggggcgCTACAGGAGATAATCagggactaaatcaaatcaaacaagaAGTCCTGTGGTAGTTTCTCTGACCTAGTCatttcttttctcttttttttttctccatttattttaattttatttttttaagaatCTGAACTGTTCTGAGTGATTTTGTTCTGTTTTACATCGTGCTGTGAAGTCGCCTCATGTTTATCATGCATGCAGTGTAACTGAACTAACTGGGGGGGGGTTCCAACCCAAAATACACCCCAAAATCCACATTTTTAGTTCATCTTATTTTGGAGGAGACGCGGTTAAGAGCATTTAACTATTTGGAGCTGGTTTTCGTCTCTTCTTCCTGTCCCCGACTTTCAGTGTTGAATGCCAGTCTTCTGCGTGTATATTTTAGGAAGCGATTGCTCCCGAGACAGTTGTCCCCTTGTCACATTTGTCTTTGTGCTGTTCATACTTGTACACGGTTCAGGTGAAGATCTCTACTGAAATGGGTTGTGTTGTACTGAATCTGACTGGCAGTGTTGTTGCGAGTCCCTTttttgcctttaaaaaaaaaaaatgtcaagccatttttttttttttctagtgttTTGACTGATCTGGAAGCAAAAAGCAATATTGTTGTTATGATCGATCCCGTTTCCTTTCTGAAGTTTAAACCAATCAGTGCTGTAAAGTTTAAAGAACCTGCAAGGTTTTGTCGGGGGCGGGGGATTAAGGTATCGCTTTGTCTTGGATGACTGTTTTGTACAAAAACAATTAAATACTATTGAGTGTTTTA
>XM_036976570.1
actttgtggctgtggtaacgacCCTTTGCAGCAGGAGGAGGGATGCAGTCATCCGCCATTTCAGCTGCTACGATGAGACCTACTTCCAGTAAACATTGACGAGGgaaccatccatttaccacattGTAGATGTTGTAGTTAGATATAGAGCAACTATTAGGTATAGGGCAACGATTAGGTATAGGGCAACTATTAGGCATAGGGCAACCGTGAGAGGAGACAAAACGAGTCCTCTAAAGGTTTGCGGAAAGCAGGGAAAGGGGCGGAAGATGGCGGTCGACAGACGAGACGACAAAGAGGGAGAGCTCAACGTGCTGGATGACATCCTCACCGAGGCCCCGGACCAGGATGACGAGCTCTATAACCCTGAGAGTGAACAGCACGTCAACCAGAAAAAAGGATCTAAGAGGAAGAATGACCGAGGGGATGACCACGAGCTGAAACGCCTCCGGGCCTCGGCTCACACCACCAGACAGGCCGCTAAAAGATCTGCCCCCTCGGCTGGCGGGAAGAAACTGGTCAACCTCAGGGGGGTGCGGCACCCCTCCGAATACAAGACCGAAGATTATTACGACGACCGGAAAACCCATTCCATCCGAGCTGGTGGGGCGCAGAGGGGGGACCCTCCCAAAGCAGCCCACCTTGACAAGCCTCTGGGCCGCAggagagagccagacagacagaggatcAAGCCCCTCATGCCTGAGCTAACCACAGAGCTGATGCGTCCCAGTGAGGGGAGTGTTGGCAGGGTCAGCACCTCCTCCAaggaagaggcagaagaggaggCATCAGACCAGGAGACTGGCAGCACGGCTGAGTCCTCCGAGGGAGACCGATCCAacatggagggagaagaggtgatggaggaggaagaagaggaggaggaggagggagagaagggcccagaggaagacgaggaagaggaggaagaagagtatGAACAGGAGGAAGGGGATCAGAGAGTGGTGAACGAACCGCCGGATTACGACACTCGCAGCGAAGCCAGCGACTCCCAGTCTGATTCAGTGTCGTTCTCTGAGGGGGAGTCGGTTCACTCTGGGTCTGGATCTGACGCCTCAGGTTCTGAGAAGAAGCATGAGAAGCTATCCTCCTCTGTTCGAGCCGTCCGCAAGGATCAGAGCAGCAAGCTGAAGTACATCCTACGAGACGCACGCTTCTTCCTGATCAAGAGCAACAACCATGAGAACGTCTCCCTGGCCAAGGCTAAGGGAGTGTGGTCCACTCTGCCTGTGAACGAGAAGAAGCTGAACGCTGCCTTCCGTTCTGCCCGCAGCGTCATCCTGGTCTTCTCAGTCAGGGAGAGTGGAAAGTTCCAAGGTTTCGCCAGGCTGTCCTCGGAGTCCCATCATGGAGGGTCTCCCATCCACTGGGTCCTGCCTGCTGGGATGAACGCCAAGATGCTGGGCGGGGTGTTCAAGATCCACTGGATCTGCAGACGGGAGTTACCGTTCACTAAAACGGCTCACCTTTCCAACCCGTGGAACGAACACAAGCCTGTAAAGATCGGCCGAGATGGACAGGAGATCGAACCAGGGTGTGGGATGCAGCTGTGCATGCTGTTCCCCCAGGACGAGAGCATTGACTTGTATCAAGTTATTCATAAAATGCGACACAAGCGGAGGATGCCTTCGGAGCCGCGTTCTCGAGGACGCCCGCCGCACAGAGAACCCGCCCGAGGCGACCTGGGAAGGCGTCGGCCCGAGGAATATGACATTCACAACAGGAAACGCCCAAGGATTGACTATCCAGCCGAGTTCCCACAGAGACCAGGCTTTATGCCAGTTCCACGTAACCCACCAGTTGACCGGCGCTTCCCAACTGGAGTAAGAAGAGATGTGTTTCTCAATGGGTCCTACAACGATTACATGAGAGAGTTCCACCACACCATTGGACCGCCTCCTCCTTGGCAAGGAATGGCACCGTACCCTGGGATGGAGCAGCCACCTCACCACCCGTTCTACCAGCACCATCCTCCACCTCCCCAGGCACATCCCCCGTACACTGGGCACCACCCTGTACCACACGACGCCCGCTTCAGGGAGAAGAGAGTCGTACGCTCCTTCAGCTCTACCCTGcatgaCTATGACATGCGGGTGGATGACTTCCTGAGACGGACCCAGGCCGTGGTGACAGGTCGCCGCAGCCGCCCCAGAGAACGAGACCGGCAGAGGGAGCGGGAACGGCCCCGGGATGCCCGCCGGGACCGCGACAGAGACCGTGGACGCGAAcgtgaccgagagagagaccggatcagagacagggagaaggagagggggcgCTACAGGAGATAATCagggactaaatcaaatcaaacaagaAGTCCTGTGGTAGTTTCTCTGACCTAGTCatttcttttctcttttttttttctccatttattttaattttatttttttaagaatCTGAACTGTTCTGAGTGATTTTGTTCTGTTTTACATCGTGCTGTGAAGTCGCCTCATGTTTATCATGCATGCAGTGTAACTGAACTAACTGGGGGGGGGTTCCAACCCAAAATACACCCCAAAATCCACATTTTTAGTTCATCTTATTTTGGAGGAGACGCGGTTAAGAGCATTTAACTATTTGGAGCTGGTTTTCGTCTCTTCTTCCTGTCCCCGACTTTCAGTGTTGAATGCCAGTCTTCTGCGTGTATATTTTAGGAAGCGATTGCTCCCGAGACAGTTGTCCCCTTGTCACATTTGTCTTTGTGCTGTTCATACTTGTACACGGTTCAGGTGAAGATCTCTACTGAAATGGGTTGTGTTGTACTGAATCTGACTGGCAGTGTTGTTGCGAGTCCCTTttttgcctttaaaaaaaaaaaatgtcaagccatttttttttttttctagtgttTTGACTGATCTGGAAGCAAAAAGCAATATTGTTGTTATGATCGATCCCGTTTCCTTTCTGAAGTTTAAACCAATCAGTGCTGTAAAGTTTAAAGAACCTGCAAGGTTTTGTCGGGGGCGGGGGATTAAGGTATCGCTTTGTCTTGGATGACTGTTTTGTACAAAAACAATTAAATACTATTGAGTGTTTTA
>TU406148
GCTAACCCCAGTATCTATGGGCCGGGCCGTTGCTAACCCCAGTATCTATGGGCCGGGCCATTGCTAGTAGGCTGAGTGTGGCTTGTCTCTCTCTACAGGTGATGGTGGTTAATTAGTTTGATCTCTCAATATAAAGAATGCAATTTTAATTTATACCATCATGATACTTAAAACCACTTAAGTTGTAGTTGCGTTTTAATACATGTGTCTTCAGGTTGCTTGAATGAATTTGTCTAGATAagtctgtttttttaaatttgttcCCGAAGCCTTTTCTTTCAGGAGTATCCTGGCGAGTTAAAACCTAGTCATATATGGGACTTAGAAAAAGGAGCCGTTCTATTTAAGCAGAAGATGGCACGTGGATTTGAGTGGGGAGAATGATGATGCTGTCTTAAATGCTTCCAGGGgacttttctctccctccatggGCCATTTATTGAATATACATCATGTATACCTGTGGTGAAGTCTACACTACTGCTGTGTATGCCTGTAGCTTCAGATGGGCAGGGGTGGGTGTCTATCTACAAAGCTGCCTGGAaagggagtaaaaaaaaaaagcgttGGAAAGTTCTGGAAAGCGGTAGGCCTTTTGGGAGACCTGGCGacaacctagagagagagagagagagagagggcttggCTCTGCTGTGTGGTTCTCTCTACCTCCTGTTGCAATGCTCCGTTTACACCAGCAATCCAAATCCCCCGACATCCCCTTCAAGAGATCATATACCCGCAAAAACATTTTGGTTAATGGTCGGTCGGTCACTGTTCCCCCCCCACACAACCAAACAGGACTGGAGATGGTTGTGGTGCTGAGAGAGCCTGCCAGCTTTGTTAAAGTTTCTTCATCTGGAATGAATGGCACCTGGTGGTAGGTGGTTAGAGAAACCTAAAGGACTAGGTTAGGAGTGTTTCCTAAAGGACAGGAGTGTTTCCATACCCTAACCTAAAGGACTAGGTTAGGAGTGTTTCCTGAAGGACAGGAGTGTTTCCATACCCTAACCTAAAGGACTAGGTTAGGAGTGTTTCCTAAAGGACAGGAGTGTTTCCATACCCTAACCTAAAGGACAGGAGTGTTTCCATACCCTGACCTAAAGGACTAGGTTAGGAGTGTTTCCTAAAGGACAGGAGTGTTTCCATACCCTAACCTAAAGGACAGGAGTGTTTCCATACCCTGACCTAAAGGACTAGGTTAGGAGTGTTTCCTAAAGGACAGGAGTGTTTCCATACCCTAACCTAAAGGACTGAGAATAAGGTAGGAGGAGACCCACTGGCAGAATGATACAACCCCACTCCTTTCCTTTTTAAGGCCTCAATGGACTGAGAATAACACCACGAGGAAGGGATGTTCTAAGCCAAAGGGGGCCGTCACCTTTTTGGTTTTATAAAATGGCCGACGTGAAGTTCATCCCCTGGTCTTTTCGATTGCAATGGACTGCATCAATCACCCTTATCAATCACCCCCTTTGCCCTCCCCAGCCCGGCCCCATCCTTGTAATGTCTTTGTGGCTGTAGACCCTAAACCGTAAGATGGACTGTCTCTATATGAACTTTTGATATCTTAATATATGTCAACGGTAACAGGTCACAAAACTACAAGAAAGCGGTATGTTACAATTTTAACCGGCTCTTTCTTCATTTTCCTGTAGACAGTCATTATCCCAGCTGTAAAAACAAACACGACAACATTTTACTATCTGGTAGATTTTTGAATTGAACATGGAAAGTTGTGTTGTGGAGTAATAATGATCATTCACTTAGTGCTAACGTGGTTATTGATGGCTAGTCAGAAGCTGTTAGAATAGAACTCTAGCTCCTTATTGGAGACAAGTGATATCCCAAACCGTCCCCAAACAGGTAACTAGGCTGTACTTCCAATAGTTACAGTACTGTAAACATCCTGTTTTAGCTACAGAATGAGTTGAACTATCATAGGACCGACCTGAACAAAAACAACTTACTGGTCAATTCACTGTTTTAATGGAGCTGTCCACAACCAGTCAGATATAATTCAGAATATAATGGTTGATTCAGTAAGATATAATTCAGAATATAATGGTTGATTCAGTAAGATATCATTCAGAATATAATGGTTGATTCAGTCAGATATCATTCAGAATATAATGGTTGATTGATGCAGTCTGCTCATTATAACTGTCTATACATGTTtagtgtttaaaaaatatatatatatatttgggaaTACTGTCAAGATTCAATGAAATGCATCCTGAATTTTGGTCATAAATTAAGTTTCCCCCTTTATGGAGGTGGATGAGCTCAGAAGAGACAGAATGGTGATAAAAGGCTAAAATCAATTTGTTTCTCAAGCTGTCAAtaggttttttatttttatttttgttactAGTTCATGTAAATGTTttggtgtatatatgtatacatatgctTTTCAGATGATACTAGATGTTTTACACAGTTATATTATGACTTAAGGGCAACTAGGATGCTGTGCTGTATCGTGGTGCTTGTCTCAATTGTTTACCTAATTCATGTAGGCGTCGGCCCGAGGAATATGACATTCACAACAGGAAACGCCCAAGGATTGACTATCCAGCCGAGTTCCCACAGAGACCAGGCTTTATGCCAGTTCCACGTAACCCACCAGTTGACCGGCGCTTCCCAACTGGAGTAAGAAGAGATGTGTTTCTCAATGGGTCCTACAACGATTACATGAGAGAGTTCCACCACACCATTGGACCGCCTCCTCCTTGGCAAGGAATGGCACCGTACCCTGGGATGGAGCAGCCACCTCACCACCCGTTCTACCAGCACCATCCTCCACCTCCCCAGGCACATCCCCCGTACACTGGGCACCACCCTGTACCACACGACGCCCGCTTCAGGGAGAAGAGAGTCGTACGCTCCTTCAGCTCTACCCTGcatgaCTATGACATGCGGGTGGATGACTTCCTGAGACGGACCCAGGCCGTGGTGACAGGTCGCCGCAGCCGCCCCAGAGAACGAGACCGGCAGAGGGAGCGGGAACGGCCCCGGGATGCCCGCCGGGACCGCGACAGAGACCGTGGACGCGAAcgtgaccgagagagagaccggatcagagacagggagaaggagagggggcgCTACAGGAGATAATCagggactaaatcaaatcaaacaagaAGTCCTGTGGTAGTTTCTCTGACCTAGTCatttcttttctcttttttttttctccatttattttaattttatttttttaagaatCTGAACTGTTCTGAGTGATTTTGTTCTGTTTTACATCGTGCTGTGAAGTCGCCTCATGTTTATCATGCATGCAGTGTAACTGAACTAACTGGGGGGGGGTTCCAACCCAAAATACACCCCAAAATCCACATTTTTAGTTCATCTTATTTTGGAGGAGACGCGGTTAAGAGCATTTAACTATTTGGAGCTGGTTTTCGTCTCTTCTTCCTGTCCCCGACTTTCAGTGTTGAATGCCAGTCTTCTGCGTGTATATTTTAGGAAGCGATTGCTCCCGAGACAGTTGTCCCCTTGTCACATTTGTCTTTGTGCTGTTCATACTTGTACACGGTTCAGGTGAAGATCTCTACTGAAATGGGTTGTGTTGTACTGAATCTGACTGGCAGTGTTGTTGCGAGTCCCTTttttgcctttaaaaaaaaaaaatgtcaagccatttttttttttttctagtgttTTGACTGATCTGGAAGCAAAAAGCAATATTGTTGTTATGATCGATCCCGTTTCCTTTCTGAAGTTTAAACCAATCAGTGCTGTAAAGTTTAAAGAACCTGCAAGGTTTTGTCGGGGGCGGGGGATTAAGGTATCGCTTTGTCTTGGATGACTGTTTTGTACAAAAACAATTAAATACTATTGAGTGTTTTACTA

Function

symbol description
ythdc1 Predicted to enable N6-methyladenosine-containing RNA binding activity and mRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome and regulation of alternative mRNA splicing, via spliceosome. Predicted to be active in nucleoplasm. Orthologous to human YTHDC1 (YTH domain containing 1).

NR:

description
YTH domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976569.1 False 3074 mRNA 0.53 15 724584 759382
XM_036976570.1 False 3071 mRNA 0.53 15 724584 759382
TU406148 True 3885 TUCP 0.43 7 724581 736568

Neighbor

gene id symbol gene type direction distance location
LOC110523080 LOC106572757 coding downstream 8165 703311 ~ 716419 (-)
LOC110523078 LOC106572764 coding downstream 42033 636428 ~ 682551 (-)
LOC118964546 NA coding downstream 119475 603412 ~ 605109 (-)
LOC110523071 LOC106572866 coding downstream 267088 418741 ~ 457496 (-)
LOC110523069 snx30 coding downstream 321646 344750 ~ 402938 (-)
fktn fktn coding upstream 30983 787758 ~ 810394 (-)
LOC110523091 fsd1l coding upstream 61973 821355 ~ 910446 (-)
LOC110523076 LOC106572700 coding upstream 152053 911435 ~ 917121 (-)
LOC110523100 NA coding upstream 176963 936345 ~ 939419 (-)
LOC110523113 mob3b coding upstream 180817 940199 ~ 1004906 (-)
G357753 NA non-coding downstream 1277 720616 ~ 723307 (-)
G357794 NA non-coding downstream 14917 704144 ~ 709667 (-)
G357795 NA non-coding downstream 17013 704650 ~ 707571 (-)
G357791 NA non-coding downstream 35188 688985 ~ 689396 (-)
G357784 NA non-coding downstream 55426 667768 ~ 669158 (-)
G357804 NA non-coding upstream 15566 774948 ~ 778937 (-)
G357797 NA non-coding upstream 57772 817154 ~ 818747 (-)
G357800 NA non-coding upstream 60081 819463 ~ 820662 (-)
G357847 NA non-coding upstream 85536 844918 ~ 845402 (-)
G357751 NA other downstream 32886 690811 ~ 691698 (-)
G357278 NA other downstream 479560 244749 ~ 245024 (-)
G357258 NA other downstream 515243 207105 ~ 209341 (-)
G357257 NA other downstream 531417 190519 ~ 193167 (-)
G358126 NA other upstream 536146 1295528 ~ 1298651 (-)
G358446 NA other upstream 1085442 1834553 ~ 1893316 (-)
G359712 NA other upstream 2315163 3074545 ~ 3080338 (-)
G359752 NA other upstream 2433131 3192513 ~ 3193105 (-)

Expression


Co-expression Network