LOC110523114 (thap1)


Basic Information

Item Value
gene id LOC110523114
gene name thap1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 1012745 ~ 1015374 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601525.2
AAGTCAAAGACAGATCTTTGAAGCCATTTCGGCCATTGTGGAAAGTGGAAAGGACCTCGCCAAGAAAGGACAAAATAAAGCATTGAAAGACAAGGAAAAGGGACAAGACAACAACTGTCAAATCTGCCAGTAACTCGCGATTGTAGAGATGGTCCAATCGTGCTCAGCTTACGGATGCAAAAACAGATATCATAAAGACAGAAACATTTCATTTCACAAGTTCCCGCTAGCGCGGCCAGACGTGTGTGGGAAATGGGTTGCAGCAATGAGGAGAAACAATTTCAAACCAACCAGATACAGTAATATCTGCTCTCAGCATTTCACTAAAGATTGCTTCAAACCAGAGTGCAACAACCGAGTCCTGAAGGAGAATGCTGTACCTTCTCTATTCTGTTTCAGTAAACTACAAGtcaagGCAGAGTCCTTGGCGGACCCGTTACCTCCAGAGATGGACTTCTCTctgaccctcccctccctccccctctctgacaCAGAGGAGACCCAGcaggagatacagacagagacccaTCACACTGTAGACCCCTTACCCCTGGTAGAGAACCTTCCCCACAGCATGTCCATCTCCTGTGACCACAACTACACCGTAGAGGACACGGTTCAGCAGAAGAAGAGGATTGAGCAGCTGGAGGAACAGCTGGACAAGCTGAGGAAGAAGTTAAAGACCGTACAGCAGAAGTGTCGGAGGCAGGAGAGACAGTTGAAGAGGTTTAAGGCTATCGGAGAGTTCCAGAGGATGAACAGGGACCCGGCGCTAGGGGAGGGATATGTAATTCTACCCCAACAGCTTTATGACGCGCTCAAAGGGATTGAGCCTGTAGAGGGTCCATGAAGCCTCAAACACACCTAGCCTGGGTGCCAAGTCTGTGGAGTTGGCAAGACCACAAAccggtctgggaccaggctgtaaTAGGCCAGGCTTACGGACCCTGGTTCTCTGGGTCTGCCTTCAGTGTATTGGGGGAGGGCGGGGTTGTCCCAGGTTTATCAGTCCCTGCTTTATTAAAGGGTCAGTGTGAGGACTCTCACATCACCTCTCCCAATAGAGGTGTAGCGGATGGCTAAGCTGTCTCCTACTACCTTTCTGAGACCTATAGAACTACTGCCGTCCTGTATCCAGACATGTCTCGTCTAGGGGTCAGTGGTATCTCGTCTAGGGGTCAGTGGTATCTCGTCTAGGGGTCAGTGGTATTGATGGTGATTTCCTGTGTTGTGTCCGTGTGGAACGTTGTAATGCAAGCCGGTCGGGGTGTGTTCCACTTTTGTCACAGACAACCAACGACagtattttgtagcatttctATTTCATTTTCTTCAGGCTGTAAAGTTAAAGGGAAAAATCCCCTCCAAGTACAATAACTCTATTTGAAGGGATGGTTTTAGTGTGGTGGAGGGAGGAACacttgtgtgtactgtatgtcattGTTTAGTAATGTTAGTCAATTTATGCCTACTCCTGGACAAAAAAAAATGGGAGGTTTGTAATTGGCCGGGACTTTCTCTTCTACTGTAATATGAAATCATGTGACCCAACTGGTCAGCTGTCACTTTGACCTATTGTTGCTGCTAGGCAACAACCTTGCATCAGAGCAAAAATGTTTCAATAAAAAATAGAATTTTAAA
>TU406366
GGAAAGTGGAAAGGACCTCGCCAAGAAAGGACAAAATAAAGCATTGAAAGACAAGGAAAAGGGACAAGACAACAACTGTCAAATCTGCCAGTAACTCGCGATTGTAGAGATGGTCCAATCGTGCTCAGCTTACGGATGCAAAAACAGATATCATAAAGACAGAAACATTTCATTTCACAAGTTCCCGCTAGCGCGGCCAGACGTGTGTGGGAAATGGGTTGCAGCAATGAGGAGAAACAATTTCAAACCAACCAGATACAGTAATATCTGCTCTCAGCATTTCACTAAAGATTGCTTCAAACCAGAGTGCAACAACCGAGTCCTGAAGGAGAATGCTGTACCTTCTCTATTCTGTTTCAGTAAACTACAAGtcaagAGGAGACCCAGcaggagatacagacagagacccaTCACACTGTAGACCCCTTACCCCTGGTAGAGAACCTTCCCCACAGCATGTCCATCTCCTGTGACCACAACTACACCGTAGAGGACACGGTTCAGCAGAAGAAGAGGATTGAGCAGCTGGAGGAACAGCTGGACAAGCTGAGGAAGAAGTTAAAGACCGTACAGCAGAAGTGTCGGAGGCAGGAGAGACAGTTGAAGAGGTTTAAGGCTATCGGAGAGTTCCAGAGGATGAACAGGGACCCGGCGCTAGGGGAGGGATATGTAATTCTACCCCAACAGCTTTATGACGCGCTCAAAGGGATTGAGCCTGTAGAGGGTCCATGAAGCCTCAAACACACCTAGCCTGGGTGCCAAGTCTGTGGAGTTGGCAAGACCACAAAccggtctgggaccaggctgtaaTAGGCCAGGCTTACGGACCCTGGTTCTCTGGGTCTGCCTTCAGTGTATTGGGGGAGGGCGGGGTTGTCCCAGGTTTATCAGTCCCTGCTTTATTAAAGGGTCAGTGTGAGGACTCTCACATCACCTCTCCCAATAGAGGTGTAGCGGATGGCTAAGCTGTCTCCTACTACCTTTCTGAGACCTATAGAACTACTGCCGTCCTGTATCCAGACATGTCTCGTCTAGGGGTCAGTGGTATCTCGTCTAGGGGTCAGTGGTATCTCGTCTAGGGGTCAGTGGTATTGATGGTGATTTCCTGTGTTGTGTCCGTGTGGAACGTTGTAATGCAAGCCGGTCGGGGTGTGTTCCACTTTTGTCACAGACAACCAACGACagtattttgtagcatttctATTTCATTTTCTTCAGGCTGTAAAGTTAAAGGGAAAAATCCCCTCCAAGTACAATAACTCTATTTGAAGGGATGGTTTTAGTGTGGTGGAGGGAGGAACacttgtgtgtactgtatgtcattGTTTAGTAATGTTAGTCAATTTATGCCTACTCCTGGACAAAAAAAAATGGGAGGTTTGTAATTGGCCGGGACTTTCTCTTCTACTGTAATATGAAATCATGTGACCCAACTGGTCAGCTGTCACTTTGACCTATTGTTGCTGCTAGGCAACAACCTTGCATCAGAG

Function

symbol description
thap1 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Is expressed in head. Human ortholog(s) of this gene implicated in torsion dystonia 6. Orthologous to human THAP1 (THAP domain containing 1).

NR:

description
THAP domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601525.2 False 1641 mRNA 0.47 3 1012745 1015374
TU406366 True 1490 lncRNA 0.48 3 1012778 1015335

Neighbor

gene id symbol gene type direction distance location
LOC110523113 mob3b coding downstream 7839 940199 ~ 1004906 (-)
LOC110523100 NA coding downstream 73326 936345 ~ 939419 (-)
LOC110523076 LOC106572700 coding downstream 95624 911435 ~ 917121 (-)
LOC110523091 fsd1l coding downstream 102299 821355 ~ 910446 (-)
fktn fktn coding downstream 202632 787758 ~ 810394 (-)
LOC110523115 LOC106572830 coding upstream 21485 1036859 ~ 1051078 (-)
LOC118964538 NA coding upstream 75533 1090907 ~ 1127618 (-)
LOC110523084 rnf170 coding upstream 199458 1214832 ~ 1221694 (-)
LOC110517810 trabd2a coding upstream 320293 1335667 ~ 1475700 (-)
LOC110523086 LOC106572646 coding upstream 893575 1908949 ~ 1910347 (-)
G357901 NA non-coding downstream 5382 1007144 ~ 1007363 (-)
G357884 NA non-coding downstream 34542 977390 ~ 978203 (-)
G357886 NA non-coding downstream 36794 974441 ~ 975951 (-)
G357871 NA non-coding downstream 98486 913912 ~ 914259 (-)
G357912 NA non-coding upstream 4187 1019561 ~ 1022726 (-)
G357913 NA non-coding upstream 5500 1020874 ~ 1021800 (-)
G357914 NA non-coding upstream 7111 1022485 ~ 1023184 (-)
G357915 NA non-coding upstream 8109 1023483 ~ 1029531 (-)
G357918 NA non-coding upstream 15032 1030406 ~ 1030639 (-)
G357797 NA other downstream 193998 817154 ~ 818747 (-)
ythdc1 ythdc1 other downstream 276177 724581 ~ 759382 (-)
G357751 NA other downstream 321047 690811 ~ 691698 (-)
G357278 NA other downstream 767721 244749 ~ 245024 (-)
G357258 NA other downstream 803404 207105 ~ 209341 (-)
G358126 NA other upstream 280154 1295528 ~ 1298651 (-)
G358446 NA other upstream 829450 1834553 ~ 1893316 (-)
G359712 NA other upstream 2059171 3074545 ~ 3080338 (-)
G359752 NA other upstream 2177139 3192513 ~ 3193105 (-)
G359989 NA other upstream 2609974 3625348 ~ 3625776 (-)

Expression


Co-expression Network