LOC110523084 (rnf170)


Basic Information

Item Value
gene id LOC110523084
gene name rnf170
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 1214832 ~ 1221694 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976590.1
AGAACATGAAAGTGGAGCAACTAATTAAAAGGggtttagaaaatgtattaatcCTCGCTAGCGATATGTCATTTTCTGGGGGCGACCAGACCAAATTCATATAGACATGTCTGTAGGATATGATTAAGTGGCATGGATGAAAACAATGGAAATGGGGAAGTGGACTATTTGCTGCAAGTTGAAGACTCAATCATAGAAGGAGTCAGCAACCCGGTCTTGTTTGTGGTCGTTCTCAGTGTCACGTTCCTGTGTGGACTGGTAACTCTGCTCTGCAGAAATGAGCAGCAGAACATCCACCCAGAGAACCAGGAACACGTTCGTGCCGTCCGACAGCAGCTGCAGTCTGACTCGCAGgaAGGTGAACCAACAGAGCCCAGGCAGCAGTTCTATACAGACATGTCCTGTCCAGTGTGTCTACAGCAGGCCGTGCTGCCTGTGGAAACCAACTGCGGACATCTCTTCTGTGGTTCTTGTATAATTGCATATTGGCGATATGGGACATGGCTTGGTGCTATCAACTGTCCCATCTGCAGACAAATGGTGACCCTGCTGTTCCCTCTCTTTCATGAGCATGCCGCCCCTCAGCAGGTACAGGATGGAACGGTTGAACCGCTCCTCATTCTCCGGGATCTCAACGACTACAACCGCAGGTTCTCAGGACAACCCAGATCGCTGATGGACCGGCTGCGTGACGTCCCCACGTTGCTGCGCCACCTCTTCAGGGAGATGTTCTCCGTAGGGGGCCTGTTCTGGATGTTCCGTATCCGTATCCTGCTGTGTCTGATCGGGGCTCTGACCTACCTGATCTCCCCTCTGGACTTCATCCCCGAGGCTCTGTTCGGTCTGCTAGGCTTCCTGGACGACTTCTTCATCATCCTGCTTCTGTTCATCTATATCTCTATCATGTATAGAGAGGTGGTGACCCAGAGACTGGCAGGGTGATGACACCCGTTCAGTTCGGCTGCGGGGAAATTTGATTGTGATGCAGGAGCCAGGAGGACAATATATGCCGTGGACATAGTTACTGATCGTCGCTTAGCTTCAGGTCAAAGACACAGTGAGAGGGCTCTGTTGCTTTGGACAGGAGTTCCATCATGCAGAAGTGAGGGGACTAGTTAACGGGTCTGTTGGCAAAAATGGTTCTTATTGGCAGGTTGTTATTTCATCAGCTGATGTAATCCTATTGAATATGCTAatctaaaatgtgtgtgtgtgtgtgtgtgagacggggCTGGGACAATAAACGGATAATTACTGACATTGCA
>XM_036976589.1
agtacaaataaatatCAAATAACTTATTCCAAGAACATTTGAATAAATACATCGGGTTGAATTTAGTGCAGGCAGTACTTGGGACGCCAAAGCTACGTAGGCTAGAAAAAAGGACCCCTGTAAGAACATGAAAGTGGAGCAACTAATTAAAAGGGTCTGTAGGATATGATTAAGTGGCATGGATGAAAACAATGGAAATGGGGAAGTGGACTATTTGCTGCAAGTTGAAGACTCAATCATAGAAGGAGTCAGCAACCCGGTCTTGTTTGTGGTCGTTCTCAGTGTCACGTTCCTGTGTGGACTGGTAACTCTGCTCTGCAGAAATGAGCAGCAGAACATCCACCCAGAGAACCAGGAACACGTTCGTGCCGTCCGACAGCAGCTGCAGTCTGACTCGCAGgaAGGTGAACCAACAGAGCCCAGGCAGCAGTTCTATACAGACATGTCCTGTCCAGTGTGTCTACAGCAGGCCGTGCTGCCTGTGGAAACCAACTGCGGACATCTCTTCTGTGGTTCTTGTATAATTGCATATTGGCGATATGGGACATGGCTTGGTGCTATCAACTGTCCCATCTGCAGACAAATGGTGACCCTGCTGTTCCCTCTCTTTCATGAGCATGCCGCCCCTCAGCAGGTACAGGATGGAACGGTTGAACCGCTCCTCATTCTCCGGGATCTCAACGACTACAACCGCAGGTTCTCAGGACAACCCAGATCGCTGATGGACCGGCTGCGTGACGTCCCCACGTTGCTGCGCCACCTCTTCAGGGAGATGTTCTCCGTAGGGGGCCTGTTCTGGATGTTCCGTATCCGTATCCTGCTGTGTCTGATCGGGGCTCTGACCTACCTGATCTCCCCTCTGGACTTCATCCCCGAGGCTCTGTTCGGTCTGCTAGGCTTCCTGGACGACTTCTTCATCATCCTGCTTCTGTTCATCTATATCTCTATCATGTATAGAGAGGTGGTGACCCAGAGACTGGCAGGGTGATGACACCCGTTCAGTTCGGCTGCGGGGAAATTTGATTGTGATGCAGGAGCCAGGAGGACAATATATGCCGTGGACATAGTTACTGATCGTCGCTTAGCTTCAGGTCAAAGACACAGTGAGAGGGCTCTGTTGCTTTGGACAGGAGTTCCATCATGCAGAAGTGAGGGGACTAGTTAACGGGTCTGTTGGCAAAAATGGTTCTTATTGGCAGGTTGTTATTTCATCAGCTGATGTAATCCTATTGAATATGCTAatctaaaatgtgtgtgtgtgtgtgtgtgagacggggCTGGGACAATAAACGGATAATTACTGACATTGCA
>XM_036976591.1
AGTAAACAGTCACGTTGAGACACATCCACCGGTCTATCCTCTTCTGTCAGGCGTTTTTCCAACCAGCTGGGGGGAAAAGATGCCACCCTTTTTTGGACCGAAGCTCCGAGCCTGAATAAGATCAACCGTCTTTTATCAAAGTCTGTAGGATATGATTAAGTGGCATGGATGAAAACAATGGAAATGGGGAAGTGGACTATTTGCTGCAAGTTGAAGACTCAATCATAGAAGGAGTCAGCAACCCGGTCTTGTTTGTGGTCGTTCTCAGTGTCACGTTCCTGTGTGGACTGGTAACTCTGCTCTGCAGAAATGAGCAGCAGAACATCCACCCAGAGAACCAGGAACACGTTCGTGCCGTCCGACAGCAGCTGCAGTCTGACTCGCAGgaAGGTGAACCAACAGAGCCCAGGCAGCAGTTCTATACAGACATGTCCTGTCCAGTGTGTCTACAGCAGGCCGTGCTGCCTGTGGAAACCAACTGCGGACATCTCTTCTGTGGTTCTTGTATAATTGCATATTGGCGATATGGGACATGGCTTGGTGCTATCAACTGTCCCATCTGCAGACAAATGGTGACCCTGCTGTTCCCTCTCTTTCATGAGCATGCCGCCCCTCAGCAGGTACAGGATGGAACGGTTGAACCGCTCCTCATTCTCCGGGATCTCAACGACTACAACCGCAGGTTCTCAGGACAACCCAGATCGCTGATGGACCGGCTGCGTGACGTCCCCACGTTGCTGCGCCACCTCTTCAGGGAGATGTTCTCCGTAGGGGGCCTGTTCTGGATGTTCCGTATCCGTATCCTGCTGTGTCTGATCGGGGCTCTGACCTACCTGATCTCCCCTCTGGACTTCATCCCCGAGGCTCTGTTCGGTCTGCTAGGCTTCCTGGACGACTTCTTCATCATCCTGCTTCTGTTCATCTATATCTCTATCATGTATAGAGAGGTGGTGACCCAGAGACTGGCAGGGTGATGACACCCGTTCAGTTCGGCTGCGGGGAAATTTGATTGTGATGCAGGAGCCAGGAGGACAATATATGCCGTGGACATAGTTACTGATCGTCGCTTAGCTTCAGGTCAAAGACACAGTGAGAGGGCTCTGTTGCTTTGGACAGGAGTTCCATCATGCAGAAGTGAGGGGACTAGTTAACGGGTCTGTTGGCAAAAATGGTTCTTATTGGCAGGTTGTTATTTCATCAGCTGATGTAATCCTATTGAATATGCTAatctaaaatgtgtgtgtgtgtgtgtgtgagacggggCTGGGACAATAAACGGATAATTACTGACATTGCA

Function

symbol description
rnf170 Predicted to enable metal ion binding activity and ubiquitin protein ligase activity. Acts upstream of or within chordate embryonic development. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Used to study hereditary spastic paraplegia. Human ortholog(s) of this gene implicated in autosomal dominant sensory ataxia 1. Orthologous to human RNF170 (ring finger protein 170).

NR:

description
E3 ubiquitin-protein ligase RNF170-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15707 RNF170; E3 ubiquitin-protein ligase RNF170

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976590.1 False 1265 mRNA 0.50 8 1214832 1221376
XM_036976589.1 False 1311 mRNA 0.49 7 1214832 1221498
XM_036976591.1 True 1297 mRNA 0.51 7 1214832 1221694

Neighbor

gene id symbol gene type direction distance location
LOC118964538 NA coding downstream 87214 1090907 ~ 1127618 (-)
LOC110523115 LOC106572830 coding downstream 163754 1036859 ~ 1051078 (-)
LOC110523114 thap1 coding downstream 199458 1012745 ~ 1015374 (-)
LOC110523113 mob3b coding downstream 209926 940199 ~ 1004906 (-)
LOC110523100 NA coding downstream 275413 936345 ~ 939419 (-)
LOC110517810 trabd2a coding upstream 113973 1335667 ~ 1475700 (-)
LOC110523086 LOC106572646 coding upstream 687255 1908949 ~ 1910347 (-)
LOC118964539 NA coding upstream 787440 2009134 ~ 2060858 (-)
rassf6 LOC106572546 coding upstream 1934989 3154684 ~ 3185209 (-)
lpar1 LOC106572527 coding upstream 2170473 3392167 ~ 3453780 (-)
G358079 NA non-coding downstream 1077 1212413 ~ 1213755 (-)
G358091 NA non-coding downstream 7488 1207119 ~ 1207344 (-)
G358085 NA non-coding downstream 17466 1196396 ~ 1197366 (-)
G358080 NA non-coding downstream 28157 1183473 ~ 1186675 (-)
G357972 NA non-coding downstream 36383 1177987 ~ 1178449 (-)
G358097 NA non-coding upstream 6211 1227905 ~ 1231603 (-)
G358098 NA non-coding upstream 12553 1234247 ~ 1234595 (-)
G358099 NA non-coding upstream 12991 1234685 ~ 1235191 (-)
G358103 NA non-coding upstream 24894 1246588 ~ 1250565 (-)
G358106 NA non-coding upstream 32186 1253880 ~ 1255879 (-)
G357797 NA other downstream 396085 817154 ~ 818747 (-)
ythdc1 ythdc1 other downstream 478264 724581 ~ 759382 (-)
G357751 NA other downstream 523134 690811 ~ 691698 (-)
G357278 NA other downstream 969808 244749 ~ 245024 (-)
G357258 NA other downstream 1005491 207105 ~ 209341 (-)
G358126 NA other upstream 73834 1295528 ~ 1298651 (-)
G358446 NA other upstream 623130 1834553 ~ 1893316 (-)
G359712 NA other upstream 1852851 3074545 ~ 3080338 (-)
G359752 NA other upstream 1970819 3192513 ~ 3193105 (-)
G359989 NA other upstream 2403654 3625348 ~ 3625776 (-)

Expression


Co-expression Network