LOC110517810 (trabd2a)


Basic Information

Item Value
gene id LOC110517810
gene name trabd2a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 1335667 ~ 1475700 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976592.1
GAGATGCTCACACTCCAGCAACACTGTGAGGGAGTAATGAGGGCAGTCTGGAGTTATGGAAACACAGACGACACGGTAAAGAACGTTTCTCACGTTTCTTCGAGGATTCGCGTACGGTTGATGCCGCTTGGAGTTGGACAACCGGATTCCAAATAAAGTGTTGCAATGTTGGAATTCCGAACAGCACTTGTACATTAATTTGTATCTGCGGTCCTGTGTTTGGAAGTAGAGCAGAGTAACACCGTCGCAGCGAGGAGGAATTCCACCGCTCATTTCGGAACCCGCGGTCCACGTCGTTTTTAGTTTAGAACATAACCTGTTGCTCGAGTGCACTTTGGATACGAACCTACTCATCGTGCGCAGTCTGCTCGGTTCTATGAGTGAGTGGGCTATAAACACGGGAAATATAGATTTGATTGATCTTATTGAGGACTTGTAGTCTAGTCTACTATTGGAGGAGAAAGTTGTAGGCTTCCCTGGCGTGTCGTGCAAGGCACCTTTATTATCAGATATGAGGGGAAACAGCGTGACGACATAGCCACCAAACATCGGCAATGCTTTCCCaggaggggaaaaaacaacacTCAACTTAAGTATTGAAAGCAATTTCACTCAAACATGAGTTCTTCCTGCGGCAGAAAGTTAGATGTGCTATATATCGGCGTGTTTGATTTATTCTTTCCATGGAACTGAAATTCGGAAATTAATTTAGGTAATTTCCCCGGAGcgagttgttttttggggggtagcTTCATCTTACGACACGTTGTGAAAATAACGTGCAGGTTTGGAGTTACGATGCTGGTCTCTTGGGTCGCATTTATTCAAGCGTTCCTAACACTGCTGGTGAAAGGAGCCGACCAATGGAGCCTCCGGGAGTCCTCTAACTGCGAGCTCAATAAGAAACAAAGTGATCTGAACTCTTTCCTGTGGACCATCAAACGTAACCCTCCGTCCTACTTCTACGGCACGATCCACGTCCCTTACACGCGCGTCTGGGACTTTATCCCAGAGAACTCCAAGAAGGCTTTCCAGGAGAGTAACATGGTTTACTTGGAGCTGGACCTGACTGACCCCTACACCATCTCAGCCCTGACCAGCTGCCAGCTCCTCCCCCAGGGGGGAACCCTACAGGACGTTCTACCCAGAGACATCTACGGACGCCTCAAGAGGCACTTGGAGTACGTCAAGCTCATGATGCCGTTCTGGATGACTCCTGACCAGAGGGGTAAAGGCCTCTACGCTGACTACCTGTTTAATGCGATAGCAGGGAACTGGGAGAGGAAGAGGCCTGTGTGGGTGATGTTGATGGTGAATTCGTTGACCGAGGCGGACATTAAGACGAGGGGGGTCCCGGTGTTGGATCTGTACCTGGCCCAGGAGGcagagaggatgaggaagagaacaGGAGCTGTGGAGAAGGTGGAGGAGCAGTGTCACCCGCTCAACGGACTCAACTTCTCTCAGGTGATCTTTGCCCTGAACCAGACCCTTGTACAGCAGGAGAGTGTGAGAGCAGGCAGTCTGCAGGGCTCCTATACCACTGAGGACCTCATCAAGCACTACAACTGTGGAGACCTCAACTCCATCATCTTCAACCATGAcacctctcaggTCCCCAACTTTAACAACGTGACCCTGCGCCCCAGCGAACAGATAACGGCCCAGGAGATTGACAGCTACTTCAGACAGGAACTGATCTACAAGAGGAACGACAGGATGGGGAACAGGGTTAAGACTCTGATGGAAGAACACCCTGACAACAGCTTCTTCTTCGCCTTCGGAGCAGGTCACTTCCTGGGCAACAACACAGTGATTGATGTGCTGAGGAGTCAGGGCTATGAAGTGGAGCACACTCCTGCAGGGCAGCCCATTAGCAGTCGATCGAAATCCTCTACCGACCAGACGGGTCATTCTCCGGGTCAGAACCTGGATGAGTCCCCTTACCTGGAGCCGTTCCTCCACGAATTCCACGATGAGGAGCAACAGCACCCTCTGCAGGACAACCCACTACCCAACATACCTCGTCACTCCCCCAGCCTGGAGCTGATGGACACGATGGACCGCAAGCTGAAGAAGAAACGACGTAACAAACAGAGGAAAcatcagagaaacagacagtttAATGACCTCTGGGTTCGCATCgaggagagCACCACAGTCCagtctcctccacctcctctggtGCATATCCTCAACGGTTACGTCACCGTAGGGCCTCACCACCATGACCTTGAAAGAGGCCTCGCCCACGGCCACGGCAGAACCAATCACCACAGGTGGTCGTCAGGCTGCTCCGCCTCCACGCCGCTGCCTGTCATCTGGTTACGGTTAACAGTATTGGTTCACACCTGGACACTGGTAGTAACTCTAGTCTAAAGTATGAGGTTGTTGGATAAAGTTTTACACAAAAACTGGAagaaaaatcctcatcaatctatttCAAAAACACTGTAATTCTGTATACTGTTAACACTGTTGGGTGACATCTGGACTGCACATCTAGTACAGGAGGTTCCTGGTTCAAAACCCTCCTGCTCTCATCTGGACTGCAGCACTAATGCAGGAGGTTCCTGGTTCAAAACCCTCCTGCTCTCATCTGGACTGCAGCACTAATGCAGGAGGTTCCTGGTTCAAAACCCTCCTGCTCTCATCTGGACTGCAGCACTAATGCAGGAGGTTCCTGGTTCAAAACCCTCCTGCTCTCATCTGGACTGCAGCACTAATGCAGGAGGTTACTGGTTCAAAACCCTCCTGCTCTCATCTGGACTCTAGTAGCAGATCTAGTACTGTAATCAGTGTTGGTTCACATCTGGACCCTGAATAACTAGTGCAGGAGGTTACTGGTTCAAACCCTTCCTGCTCttaaactggaaggaaaggaatCATCTTTTTCAACACACAATGAGGTGAATCCTAACTTCAAGTGAAAATCGGACATAAGTGGAAGTTCGCATTCGTTCAAATCAGTCTAAACTGGATCTTTTTACATGTAATTTAgtactttattttttacaaaaaaaaacgaATATATTATTAAGAACCCAAACAGCTCTTCCTTTTCTTCCGACCCTCTTCATTTATTCTTCCCTTTTTGAGGAATGTGTTTTGTATCGTGTa
>XR_005051621.1
GAGATGCTCACACTCCAGCAACACTGTGAGGGAGTAATGAGGGCAGTCTGGAGTTATGGAAACACAGACGACACGGTAAAGAACGTTTCTCACGTTTCTTCGAGGATTCGCGTACGGTTGATGCCGCTTGGAGTTGGACAACCGGATTCCAAATAAAGTGTTGCAATGTTGGAATTCCGAACAGCACTTGTACATTAATTTGTATCTGCGGTCCTGTGTTTGGAAGTAGAGCAGAGTAACACCGTCGCAGCGAGGAGGAATTCCACCGCTCATTTCGGAACCCGCGGTCCACGTCGTTTTTAGTTTAGAACATAACCTGTTGCTCGAGTGCACTTTGGATACGAACCTACTCATCGTGCGCAGTCTGCTCGGTTCTATGAGTGAGTGGGCTATAAACACGGGAAATATAGATTTGATTGATCTTATTGAGGACTTGTAGTCTAGTCTACTATTGGAGGAGAAAGTTGTAGGCTTCCCTGGCGTGTCGTGCAAGGCACCTTTATTATCAGATATGAGGGGAAACAGCGTGACGACATAGCCACCAAACATCGGCAATGCTTTCCCaggaggggaaaaaacaacacTCAACTTAAGTATTGAAAGCAATTTCACTCAAACATGAGTTCTTCCTGCGGCAGAAAGTTAGATGTGCTATATATCGGCGTGTTTGATTTATTCTTTCCATGGAACTGAAATTCGGAAATTAATTTAGGTAATTTCCCCGGAGcgagttgttttttggggggtagcTTCATCTTACGACACGTTGTGAAAATAACGTGCAGGTTTGGAGTTACGATGCTGGTCTCTTGGGTCGCATTTATTCAAGCGTTCCTAACACTGCTGGTGAAAGGAGCCGACCAATGGAGCCTCCGGGAGTCCTCTAACTGCGAGCTCAATAAGAAACAAAGTGATCTGAACTCTTTCCTGTGGACCATCAAACGTAACCCTCCGTCCTACTTCTACGGCACGATCCACGTCCCTTACACGCGCGTCTGGGACTTTATCCCAGAGAACTCCAAGAAGGCTTTCCAGGAGAGTAACATGGTTTACTTGGAGCTGGACCTGACTGACCCCTACACCATCTCAGCCCTGACCAGCTGCCAGCTCCTCCCCCAGGGGGGAACCCTACAGGACGTTCTACCCAGAGACATCTACGGACGCCTCAAGAGGCACTTGGAGTACGTCAAGCTCATGATGCCGTTCTGGATGACTCCTGACCAGAGGGGTAAAGGCCTCTACGCTGACTACCTGTTTAATGCGATAGCAGGGAACTGGGAGAGGAAGAGGCCTGTGTGGGTGATGTTGATGGTGAATTCGTTGACCGAGGCGGACATTAAGACGAGGGGGGTCCCGGTGTTGGATCTGTACCTGGCCCAGGAGGcagagaggatgaggaagagaacaGGAGCTGTGGAGAAGGTGGAGGAGCAGTGTCACCCGCTCAACGGACTCAACTTCTCTCAGGTGATCTTTGCCCTGAACCAGACCCTTGTACAGCAGGAGAGTGTGAGAGCAGGCAGTCTGCAGGGCTCCTATACCACTGAGGACCTCATCAAGCACTACAACTGTGGAGACCTCAACTCCATCATCTTCAACCATGAcacctctcaggTCCCCAACTTTAACAACGTGACCCTGCGCCCCAGCGAACAGATAACGGCCCAGGAGATTGACAGCTACTTCAGACAGGAACTGATCTACAAGAGGAACGACAGGATGGGGAACAGGGTTAAGACTCTGATGGAAGAACACCCTGACAACAGCTTCTTCTTCGCCTTCGGAGCAGGTCACTTCCTGGGCAACAACACAGTGATTGATGTGCTGAGGAGTCAGGGCTATGAAGTGGAGCACACTCCTGCAGGGCAGCCCATTAGCAGTCGATCGAAATCCTCTACCGACCAGACGGGTCATTCTCCGGGTCAGAACCTGGATGAGTCCCCTTACCTGGAGCCGTTCCTCCACGAATTCCACGATGAGGAGCAACAGCACCCTCTGCAGGACAACCCACTACCCAACATACCTCGTCACTCCCCCAGCCTGGAGCTGATGGACACGATGGACCGCAAGCTGAAGAAGAAACGACGTAACAAACAGAGGAAAcatcagagaaacagacagtttAATGACCTCTGGGTTCGCATCgaggagagCACCACAGTCCagtctcctccacctcctctggtGCATATCCTCAACGGTTACGTCACCGTAGGGCCTCACCACCATGACCTTGAAAGAGGCCTCGCCCACGGCCACGGCAGAACCAATCACCACAGGTGGTCGTCAGGCTGCTCCGCCTCCACGCCGCTGCCTGTCATCTGGTTACGGTTAACAGTATTGGTTCACACCTGGACACTGGTAGTAACTCTAGTCTAAAGTATGAGGTTGTTGGATAAAGTTTTACACAAAAACTGGAagaaaaatcctcatcaatctatttCAAAAACACTGTAATTCTGTATACTGTTAACACTGTTGGGTGACATCTGGACTGCACATCTAGTACAGGAGGTTCCTGGTTCAAAACCCTCCTGCTCTCATCTGGACTGCAGCACTAATGCAGGAGGTTCCTGGTTCAAAACCCTCCTGCTCTCATCTGGACTGCAGCACTAATGCAGGAGGTTCCTGGTTCAAAACCCTCCTGCTCTCATCTGGACTGCAGCACTAATGCAGGAGGTTACTGGTTCAAAACCCTCCTGCTCTCATCTGGACTCTAGTAGCAGATCTAGTACTGTAATCAGTGTTGGTTCACATCTGGACCCTGAATAACTAGTGCAGGAGGTTACTGGTTCAAACCCTTCCTGCTCttaaactggaaggaaaggaatCATCTTTTTCAACACACAATGAGGTGAATCCTAACTTCAAGTGAAAATCGGACATAAGTGGAAGTTCGCATTCGTTCAAATCAGTCTAAACTGGATCTTTTTACATGTAATTTAgtactttattttttacaaaaaaaaacgaATATATTATTAAGAACCCAAACAGCTCTTCCTTTTCTTCCGACCCTCTTCATTTATTCTTCCCTTTTTGAGGAATGTGTTTTGTATCGTGTa
>XR_005051622.1
GAGATGCTCACACTCCAGCAACACTGTGAGGGAGTAATGAGGGCAGTCTGGAGTTATGGAAACACAGACGACACGGTAAAGAACGTTTCTCACGTTTCTTCGAGGATTCGCGTACGGTTGATGCCGCTTGGAGTTGGACAACCGGATTCCAAATAAAGTGTTGCAATGTTGGAATTCCGAACAGCACTTGTACATTAATTTGTATCTGCGGTCCTGTGTTTGGAAGTAGAGCAGAGTAACACCGTCGCAGCGAGGAGGAATTCCACCGCTCATTTCGGAACCCGCGGTCCACGTCGTTTTTAGTTTAGAACATAACCTGTTGCTCGAGTGCACTTTGGATACGAACCTACTCATCGTGCGCAGTCTGCTCGGTTCTATGAGTGAGTGGGCTATAAACACGGGAAATATAGATTTGATTGATCTTATTGAGGACTTGTAGTCTAGTCTACTATTGGAGGAGAAAGTTGTAGGCTTCCCTGGCGTGTCGTGCAAGGCACCTTTATTATCAGATATGAGGGGAAACAGCGTGACGACATAGCCACCAAACATCGGCAATGCTTTCCCaggaggggaaaaaacaacacTCAACTTAAGTATTGAAAGCAATTTCACTCAAACATGAGTTCTTCCTGCGGCAGAAAGTTAGATGTGCTATATATCGGCGTGTTTGATTTATTCTTTCCATGGAACTGAAATTCGGAAATTAATTTAGGTAATTTCCCCGGAGcgagttgttttttggggggtagcTTCATCTTACGACACGTTGTGAAAATAACGTGCAGGTTTGGAGTTACGATGCTGGTCTCTTGGGTCGCATTTATTCAAGCGTTCCTAACACTGCTGGTGAAAGGAGCCGACCAATGGAGCCTCCGGGAGTCCTCTAACTGCGAGCTCAATAAGAAACAAAGTGATCTGAACTCTTTCCTGTGGACCATCAAACGTAACCCTCCGTCCTACTTCTACGGCACGATCCACGTCCCTTACACGCGCGTCTGGGACTTTATCCCAGAGAACTCCAAGAAGGCTTTCCAGGAGAGTAACATGGTTTACTTGGAGCTGGACCTGACTGACCCCTACACCATCTCAGCCCTGACCAGCTGCCAGCTCCTCCCCCAGGGGGGAACCCTACAGGACGTTCTACCCAGAGACATCTACGGACGCCTCAAGAGGCACTTGGAGTACGTCAAGCTCATGATGCCGTTCTGGATGACTCCTGACCAGAGGGGTAAAGGCCTCTACGCTGACTACCTGTTTAATGCGATAGCAGGGAACTGGGAGAGGAAGAGGCCTGTGTGGGTGATGTTGATGGTGAATTCGTTGACCGAGGCGGACATTAAGACGAGGGGGGTCCCGGTGTTGGATCTGTACCTGGCCCAGGAGGcagagaggatgaggaagagaacaGGAGCTGTGGAGAAGGTGGAGGAGCAGTGTCACCCGCTCAACGGACTCAACTTCTCTCAGGTGATCTTTGCCCTGAACCAGACCCTTGTACAGCAGGAGAGTGTGAGAGCAGGCAGTCTGCAGGGCTCCTATACCACTGAGGACCTCATCAAGCACTACAACTGTGGAGACCTCAACTCCATCATCTTCAACCATGAcacctctcaggTCCCCAACTTTAACAACGTGACCCTGCGCCCCAGCGAACAGATAACGGCCCAGGAGATTGACAGCTACTTCAGACAGGAACTGATCTACAAGAGGAACGACAGGATGGGGAACAGGGTTAAGACTCTGATGGAAGAACACCCTGACAACAGCTTCTTCTTCGCCTTCGGAGCAGGTCACTTCCTGGGCAACAACACAGTGATTGATGTGCTGAGGAGTCAGGGCTATGAAGTGGAGCACACTCCTGCAGGGCAGCCCATTAGCAGTCGATCGAAATCCTCTACCGACCAGACGGGTCATTCTCCGGGTCAGAACCTGGATGAGTCCCCTTACCTGGAGCCGTTCCTCCACGAATTCCACGATGAGGAGCAACAGCACCCTCTGCAGGACAACCCACTACCCAACATACCTCGTCACTCCCCCAGCCTGGAGCTGATGGACACGATGGACCGCAAGCTGAAGAAGAAACGACGTAACAAACAGAGGAAAcatcagagaaacagacagtttAATGACCTCTGGGTTCGCATCgaggagagCACCACAGTCCagtctcctccacctcctctggtGCATATCCTCAACGGTTACGTCACCGTAGGGCCTCACCACCATGACCTTGAAAGAGGCCTCGCCCACGGCCACGGCAGAACCAATCACCACAGGTGGTCGTCAGGCTGCTCCGCCTCCACGCCGCTGCCTGTCATCTGGTTACGGTTAACAGTATTGGTTCACACCTGGACACTGGTAGTAACTCTAGTCTAAAGTATGAGGTTGTTGGATAAAGTTTTACACAAAAACTGGAagaaaaatcctcatcaatctatttCAAAAACACTGTAATTCTGTATACTGTTAACACTGTTGGGTGACATCTGGACTGCACATCTAGTACAGGAGGTTCCTGGTTCAAAACCCTCCTGCTCTCATCTGGACTGCAGCACTAATGCAGGAGGTTCCTGGTTCAAAACCCTCCTGCTCTCATCTGGACTGCAGCACTAATGCAGGAGGTTCCTGGTTCAAAACCCTCCTGCTCTCATCTGGACTGCAGCACTAATGCAGGAGGTTACTGGTTCAAAACCCTCCTGCTCTCATCTGGACTCTAGTAGCAGATCTAGTACTGTAATCAGTGTTGGTTCACATCTGGACCCTGAATAACTAGTGCAGGAGGTTACTGGTTCAAACCCTTCCTGCTCttaaactggaaggaaaggaatCATCTTTTTCAACACACAATGAGGTGAATCCTAACTTCAAGTGAAAATCGGACATAAGTGGAAGTTCGCATTCGTTCAAATCAGTCTAAACTGGATCTTTTTACATGTAATTTAgtactttattttttacaaaaaaaaacgaATATATTATTAAGAACCCAAACAGCTCTTCCTTTTCTTCCGACCCTCTTCATTTATTCTTCCCTTTTTGAGGAATGTGTTTTGTATCGTGTa

Function

symbol description
trabd2a Predicted to enable Wnt-protein binding activity and metalloendopeptidase activity. Predicted to be involved in head development and negative regulation of Wnt signaling pathway. Predicted to act upstream of or within Wnt signaling pathway and proteolysis. Predicted to be integral component of organelle membrane and integral component of plasma membrane. Orthologous to human TRABD2A (TraB domain containing 2A).

NR:

description
metalloprotease TIKI1-like

GO: NA

KEGG:

id description
K25185 TRABD2; metalloprotease TIKI

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976592.1 False 3120 mRNA 0.49 7 1335667 1475700
XR_005051621.1 False 3065 mRNA 0.49 8 1335667 1475700
XR_005051622.1 True 3065 mRNA 0.49 8 1335667 1475700

Neighbor

gene id symbol gene type direction distance location
LOC110523084 rnf170 coding downstream 113973 1214832 ~ 1221694 (-)
LOC118964538 NA coding downstream 208049 1090907 ~ 1127618 (-)
LOC110523115 LOC106572830 coding downstream 284589 1036859 ~ 1051078 (-)
LOC110523114 thap1 coding downstream 320293 1012745 ~ 1015374 (-)
LOC110523113 mob3b coding downstream 330761 940199 ~ 1004906 (-)
LOC110523086 LOC106572646 coding upstream 433249 1908949 ~ 1910347 (-)
LOC118964539 NA coding upstream 533434 2009134 ~ 2060858 (-)
rassf6 LOC106572546 coding upstream 1680983 3154684 ~ 3185209 (-)
lpar1 LOC106572527 coding upstream 1916467 3392167 ~ 3453780 (-)
LOC118964540 NA coding upstream 2021650 3497350 ~ 3498234 (-)
G358141 NA non-coding downstream 7161 1328263 ~ 1328506 (-)
G358139 NA non-coding downstream 8703 1326598 ~ 1326964 (-)
G358138 NA non-coding downstream 9422 1325830 ~ 1326245 (-)
G358137 NA non-coding downstream 12901 1322452 ~ 1322766 (-)
G358133 NA non-coding downstream 20614 1314836 ~ 1315053 (-)
G358248 NA non-coding upstream 88173 1563873 ~ 1568403 (-)
G358249 NA non-coding upstream 90120 1565820 ~ 1595934 (-)
G358253 NA non-coding upstream 100573 1576273 ~ 1584874 (-)
G358256 NA non-coding upstream 109819 1585519 ~ 1637264 (-)
G358264 NA non-coding upstream 183815 1659515 ~ 1659771 (-)
G358126 NA other downstream 37016 1295528 ~ 1298651 (-)
G357797 NA other downstream 516920 817154 ~ 818747 (-)
ythdc1 ythdc1 other downstream 599099 724581 ~ 759382 (-)
G357751 NA other downstream 643969 690811 ~ 691698 (-)
G357278 NA other downstream 1090643 244749 ~ 245024 (-)
G358446 NA other upstream 369124 1834553 ~ 1893316 (-)
G359712 NA other upstream 1598845 3074545 ~ 3080338 (-)
G359752 NA other upstream 1716813 3192513 ~ 3193105 (-)
G359989 NA other upstream 2149648 3625348 ~ 3625776 (-)
G360015 NA other upstream 2238532 3714232 ~ 3715552 (-)

Expression


Co-expression Network