LOC110523086 (LOC106572646)


Basic Information

Item Value
gene id LOC110523086
gene name LOC106572646
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 1908949 ~ 1910347 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601501.2
CAGTTTCAGTCGGACAAGTTTTTAAGACAACACTCCAGACTGTCAACTTTAGTTTACTTAGACTGACTAGTGCTGCTGTATCACCTTAACAAGTTAGTAACAGCAGTCCAGAAGCCATGCCGAGCCACGCGGAGCAGTGGATCCGCACTTCGATGCGCACCCCGGGCATTTTTATCTTCGGAATGGTCCTTGCCCCTTGCGGCTGGATCCTAAACCTCACAGCGACAGTGGCTCCCAACTGGAGAACCATCAACACTATCGCCTTACTGCCGGTTGATACGTTCCTACAACAAGGCATCTGGGACATATGCAAGACGTCCAGCTCGTCCCAAGTAAACCAATGTAACCAAAAGGACGAGGCGTACTTCAACAACCAGATTATAGCGGTCGCCCAGGGCTTGATGGTAGCGTCTCTGATATTGACTCTGATTGGGCTGGCCACGGCAACCCCCGGGGTAAGGTGCTGGAAAGACCGCCCGAACTGGACAGTAGCCGGGCTGGGGGGAATGCTCATCTTTCTGTCTGGAGTCTTGACGATCATCCCTATTGCATGGTACACTCACATCTTCAAGGACATCGCCGCATCCAGCACCGACATTCGCGTTGGCTACTGTATTATTTTGGGATACATCGGGGGCATCTTCGAGCTACTGGGCGGCTTGGTCATGTTCATTGGGATATGTCGTTGCTGTGGCGGTAAGAACCGCGGAGAGACGCGAATCTCGGAGACCACAGCACACTTCAGAAACACCAAACCCCCACCGCGCCGCATCGAGGTGCCGAGCATAGCCCGAACCCGGAGTAGCGCTAGCAGCGTCCCCTACTCTAAAGACTCCATGGAAGACGAGGCGGACTTCCCCCGGGCAAAGAGCACCTCGTACGGAGGAAGACGACCCGCTTATGACGTTGATCTGTGAGGACATTATGGTGAAGTGGGCCAGTTGCCATTGATAGGTGTGACATGTATACTATAGCACTACACAGTAACATTACATATCTACCAATAAAATGACATTTACCTCTACATGTAGGCATGTCGTTTTAACCATAAAACTAGACCTAATCTTGTTGTTTGGGTGAATATGATAGAAATATAAATTATTTCACACTTTTGGGAATATGCCTATGATGTGGCCTATGGCATGTTTGTATTTGAAGATGTAACATTATTTACAAATTACAATGCCAGCGCCAAAGAACATGGAAtgcagtgccttcgggaagtattcagaccccttgactttttctacattttgttaggttacaaccTTATAACATttataaaattgtttttttttcccatcaatctacacacactaccctgtaatggcaatgcaaaaacaggcttttagaaatgtttgctaatttataaaaaataaatactacatttacataagta

Function

NR:

description
claudin-23-like

GO: NA

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601501.2 True 1399 mRNA 0.47 1 1908949 1910347

Neighbor

gene id symbol gene type direction distance location
LOC110517810 trabd2a coding downstream 433249 1335667 ~ 1475700 (-)
LOC110523084 rnf170 coding downstream 687255 1214832 ~ 1221694 (-)
LOC118964538 NA coding downstream 781331 1090907 ~ 1127618 (-)
LOC110523115 LOC106572830 coding downstream 857871 1036859 ~ 1051078 (-)
LOC110523114 thap1 coding downstream 893575 1012745 ~ 1015374 (-)
LOC118964539 NA coding upstream 98787 2009134 ~ 2060858 (-)
rassf6 LOC106572546 coding upstream 1246336 3154684 ~ 3185209 (-)
lpar1 LOC106572527 coding upstream 1481820 3392167 ~ 3453780 (-)
LOC118964540 NA coding upstream 1587003 3497350 ~ 3498234 (-)
LOC110523109 lppr1 coding upstream 1733823 3644170 ~ 3669873 (-)
G358467 NA non-coding downstream 4050 1901874 ~ 1904899 (-)
G358446 NA non-coding downstream 15633 1834553 ~ 1893316 (-)
G358455 NA non-coding downstream 20640 1867614 ~ 1888309 (-)
G358448 NA non-coding downstream 44723 1859752 ~ 1864226 (-)
G358289 NA non-coding downstream 206780 1701862 ~ 1702169 (-)
G358476 NA non-coding upstream 3996 1914343 ~ 1914620 (-)
G358483 NA non-coding upstream 15000 1925347 ~ 1925573 (-)
G358503 NA non-coding upstream 34928 1945275 ~ 1945493 (-)
G358508 NA non-coding upstream 48021 1958368 ~ 1958572 (-)
G358546 NA non-coding upstream 58173 1968520 ~ 2019888 (-)
G358126 NA other downstream 610298 1295528 ~ 1298651 (-)
G357797 NA other downstream 1090202 817154 ~ 818747 (-)
ythdc1 ythdc1 other downstream 1172381 724581 ~ 759382 (-)
G357751 NA other downstream 1217251 690811 ~ 691698 (-)
G359712 NA other upstream 1164198 3074545 ~ 3080338 (-)
G359752 NA other upstream 1282166 3192513 ~ 3193105 (-)
G359989 NA other upstream 1715001 3625348 ~ 3625776 (-)
G360015 NA other upstream 1803885 3714232 ~ 3715552 (-)
G360345 NA other upstream 1837889 3748236 ~ 3748718 (-)

Expression


Co-expression Network