lpar1 (LOC106572527)


Basic Information

Item Value
gene id lpar1
gene name LOC106572527
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 3392167 ~ 3453780 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976619.1
GATATTTACGAGATGTGTCCATTTTTCCTTCTCCCTCGCGCACCTTCAGCTGCATCTTCAGGTGTCTATGCAAACGTAGatccCCTAGCCAGTCTTCAAGATGGAGGAGGAACAGTGCTTCTACAATGAGTCCATTGCCTTCTTCTACAACCACAGTGGAAAGTACCTGGCTACAGAGTGGAATACTGTCAGTAAGCTGGTGATGGGGCTGGGTATCACAGTATGTATCTTCATCATGCTGGCTAACTTGCTGGTCATGGTGGCTATATACGTCAACCGCCGCTTCCACTTCCCTATTTACTACCTGATGGCCAACCTGGCGGCCGCGGACTTCTTTGCCGGTCTGGCGTACTTCTACCTGATGTTCAACACGGGCCCGAACACGCGGCGCCTCACGGTCTCCACGTGGCTGCTCCGACAGGGTCTCATCGACACGTCCCTCACGGCGTCCGTGTGTAACCTCCTCGCCATCGCCATCGAGCGCCACATCACCGTTTTCCGCATGCAGCTACACACGCGCATGTCCAACCGgcgtgtggtggtggtgattgtagtcATCTGGACCTTGTCTATCGTCATGGGAGCCATCCCGTCGGTAGGGTGGAACTGTATCTGTGACATCGGCACGTGTTCTAGCATGGCTCCGCTGTACTGTAACTCCTACCTGGTGTTCTGGGCTGTATTCAACCTGGTCACCTTCCTGGTCATGGTGGTGCTGTACGCTCACATCTTTATGTACGTGAGACAGAGGACCATGAGGATGAGCAGACACAGCTCTGGGCCACGCAGGAACAGAGACACCATGATGAGTCTGCTGAAGACTGTCGTCATCGTATTGGgTGCGTTCATCGTGTGCTGGACGCCAGGGCTGGTTCTCATCCTCCTCGATGTGTTCTGTGCCAACTGTAACGTCCTGGACTTTGAGAAGTTCTTCCTGCTTCTGGCTGAGTTTAACTCTGCTATGAACCCCATCATCTACAGCTACCGGGACAAGGAGATGAGCGCCACCTTCAAGCAGATCTTGTGCTGTCAGCGCCAGGAGAACGTTAACGGGACGGCAGCCGAGGGCTCCGACCGCTCAGCCTCCTCTATCAATCACACCGTGCTGAGTGGAGGGAAACAAAACAATGATCACTCAGTGGTGTGAGGAGAGGGgctggagacaggaggagaggggctggagacaggaggagaggggctggagacaggaggagaggggctggagacaggaggagaggggctggagacaggaggagaggggc
>XM_021601520.2
GTCATACAGCGGTCCAGTCCCGTCGAGTGGCGAACAGGACTCTGAGACGCTGCAGAGGAGGACGCCAGGGAAGTAGAGAGCCACCATAACTATGCAATCACAAAAACACAGTCGTCTCTATGGACTGTAAAATGAAAAGATCACACATCCTCAACTTGGATTGGAAGAAACAACACATGCGACTCTGATGACCAACACAATAACGGAATTCACTTTTTGGAGTTTGGGAGTTCACTCCGAAATAATCTTTTGGCGTTTCAAGCAACAGTTTGTAAATATCGCTGAGACAGAACGACTatccCCTAGCCAGTCTTCAAGATGGAGGAGGAACAGTGCTTCTACAATGAGTCCATTGCCTTCTTCTACAACCACAGTGGAAAGTACCTGGCTACAGAGTGGAATACTGTCAGTAAGCTGGTGATGGGGCTGGGTATCACAGTATGTATCTTCATCATGCTGGCTAACTTGCTGGTCATGGTGGCTATATACGTCAACCGCCGCTTCCACTTCCCTATTTACTACCTGATGGCCAACCTGGCGGCCGCGGACTTCTTTGCCGGTCTGGCGTACTTCTACCTGATGTTCAACACGGGCCCGAACACGCGGCGCCTCACGGTCTCCACGTGGCTGCTCCGACAGGGTCTCATCGACACGTCCCTCACGGCGTCCGTGTGTAACCTCCTCGCCATCGCCATCGAGCGCCACATCACCGTTTTCCGCATGCAGCTACACACGCGCATGTCCAACCGgcgtgtggtggtggtgattgtagtcATCTGGACCTTGTCTATCGTCATGGGAGCCATCCCGTCGGTAGGGTGGAACTGTATCTGTGACATCGGCACGTGTTCTAGCATGGCTCCGCTGTACTGTAACTCCTACCTGGTGTTCTGGGCTGTATTCAACCTGGTCACCTTCCTGGTCATGGTGGTGCTGTACGCTCACATCTTTATGTACGTGAGACAGAGGACCATGAGGATGAGCAGACACAGCTCTGGGCCACGCAGGAACAGAGACACCATGATGAGTCTGCTGAAGACTGTCGTCATCGTATTGGgTGCGTTCATCGTGTGCTGGACGCCAGGGCTGGTTCTCATCCTCCTCGATGTGTTCTGTGCCAACTGTAACGTCCTGGACTTTGAGAAGTTCTTCCTGCTTCTGGCTGAGTTTAACTCTGCTATGAACCCCATCATCTACAGCTACCGGGACAAGGAGATGAGCGCCACCTTCAAGCAGATCTTGTGCTGTCAGCGCCAGGAGAACGTTAACGGGACGGCAGCCGAGGGCTCCGACCGCTCAGCCTCCTCTATCAATCACACCGTGCTGAGTGGAGGGAAACAAAACAATGATCACTCAGTGGTGTGAGGAGAGGGgctggagacaggaggagaggggctggagacaggaggagaggggctggagacaggaggagaggggctggagacaggaggagaggggctggagacaggaggagaggggc

Function

NR:

description
lysophosphatidic acid receptor 1-like

GO: NA

KEGG:

id description
K04289 LPAR1, EDG2; lysophosphatidic acid receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976619.1 False 1262 mRNA 0.55 3 3392167 3453418
XM_021601520.2 True 1480 mRNA 0.54 3 3392167 3453780

Neighbor

gene id symbol gene type direction distance location
rassf6 LOC106572546 coding downstream 206958 3154684 ~ 3185209 (-)
LOC118964539 NA coding downstream 1331309 2009134 ~ 2060858 (-)
LOC110523086 LOC106572646 coding downstream 1481820 1908949 ~ 1910347 (-)
LOC110517810 trabd2a coding downstream 1916467 1335667 ~ 1475700 (-)
LOC110523084 rnf170 coding downstream 2170473 1214832 ~ 1221694 (-)
LOC118964540 NA coding upstream 43570 3497350 ~ 3498234 (-)
LOC110523109 lppr1 coding upstream 190390 3644170 ~ 3669873 (-)
LOC118964541 NA coding upstream 208719 3662499 ~ 3669678 (-)
LOC110513199 dcc coding upstream 330762 3782114 ~ 4417531 (-)
fech fech coding upstream 1161221 4615001 ~ 4638131 (-)
G359818 NA non-coding downstream 60906 3330604 ~ 3331261 (-)
G359775 NA non-coding downstream 132337 3258926 ~ 3259830 (-)
G359765 NA non-coding downstream 149590 3242329 ~ 3242577 (-)
G359763 NA non-coding downstream 153244 3238696 ~ 3238923 (-)
G359762 NA non-coding downstream 153732 3237961 ~ 3238435 (-)
G359854 NA non-coding upstream 659 3454439 ~ 3518265 (-)
G359879 NA non-coding upstream 59840 3513620 ~ 3517470 (-)
G359902 NA non-coding upstream 110022 3563802 ~ 3564182 (-)
G359908 NA non-coding upstream 115536 3569316 ~ 3570365 (-)
G359929 NA non-coding upstream 137155 3590935 ~ 3591212 (-)
G359752 NA other downstream 199062 3192513 ~ 3193105 (-)
G359712 NA other downstream 311829 3074545 ~ 3080338 (-)
G358446 NA other downstream 1498851 1834553 ~ 1893316 (-)
G358126 NA other downstream 2093516 1295528 ~ 1298651 (-)
G357797 NA other downstream 2573420 817154 ~ 818747 (-)
G359989 NA other upstream 171568 3625348 ~ 3625776 (-)
G360015 NA other upstream 260452 3714232 ~ 3715552 (-)
G360345 NA other upstream 294456 3748236 ~ 3748718 (-)
G360532 NA other upstream 845612 4299392 ~ 4300025 (-)

Expression


Co-expression Network