LOC110523121 (LOC106572199)


Basic Information

Item Value
gene id LOC110523121
gene name LOC106572199
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 4654146 ~ 4670585 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976633.1
CATTGGTTACTGGCCAACTTTCGTCAAGGAACTCAGGAAAGTGTTTTGATTCGAGAGAGGAGTTGAGTTTTGGACAGTGTCTACACAGTGTGACACTGTTTTCTATATAATCGGAAGTAAATAAAATACTATATTTACAGTTGTATTCTGTAAAAATGGTCGGGGTAAAAGTAATCGGGAATGATTCAGAATTTCAACCTGAGTTAACAGCCGCCGGTTCGAGACTTGCCGTAGTGAAGTTCACAATGGCAGGGTGTCGACCCTGTGTCAGAATATCCCCTGCTTTCAACATGTTGAGTAACAAGTACCCACACGTGGTTTTCCTTGAAGTCGATGTACACGTCTGTCAGgcaaCGGCTGCCGCCAACAACATCTCTGCCACGCCGACGTTTTTGTTTTTCCGTAACAAAGTGCGCGTCGACCTCTATCAGGGTGCCGATGCCTCAGGACTAGAGGAGAAGATCAAGCAGCATGTAGAAAACGACCCTGGAAGCAACGAGGACTCGGACATTCCCAAGGGATATATGGACCTGATGCCGTTTGTGAACAAAGCTGGCTGCGAGTGCCTAAACGAGAGCGACGAGAGCGGCTTTGACAACTGCTTAGTCAAGGACACCACCTACCTGGAGTCTGACTGCGATGAGCAGCTCCTCGTTACGATGGCCTTTAACCAACCTGTCAAGCTGTACTCCATGAAGCTGCAGACCTCTGACTTCGccCAGGCTCCAAAGTGTGTGAAGATCTTCATTAACCTTCCTCGCTCCATGGACTTTGACGATGCCGAGCGGAGCGAGGCCACCCAGACCCTGGACCTGGCCGAGGAGGACTTCAAGGACGACGGGTTGATTCCGCTGAGATACGTCAAGTTCCAGAACGTTCAGAGCGTCACCATGTTTGTGAAGAACAATCAAGGGGATGAAGAGACGACTAAAATCAATTACCTTACTTTTATCGGGACCCCTGTACAAGCAACGAACATGAACGACTTCAAACGGGTTGTGGGCAAGAAAGGAGAGAGTCACTGAGGCGGCGGAGAGGAGAAGAATGGCCATATTGCTGTGGTGATCGCTGTCTGTCTGCCAAGTCTGCTGGCTGGGTCCGGCTCAGAGTCAGCTCTACTGTAATACAGCACTGACCAACAaccatgtgtcccaaatggcaacatattccctttcatagtgcactgcttttggaCCCTTTTTTTTATAGTACAATACTTGTTTTGGACCTGGTATCCCATCCTGAAGTTAGGGCTTTGATTCGGGATCCAAAGACATGTCtgaggtctaaagtagtgcactatatagggaaatagGGTGCCGTTTTGGATGTGAAGTCTATGAGCTGTAGTCCATGTCCGCCAGTGAAATCACCAAGATGAGGCATCTCAAACAATTCATTCAAGCATTTTTATTGTAATTCAGACAaacactgtaaataaaaacacaaacaaaaaggCA

Function

NR:

description
thioredoxin-like protein 1

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0006662 glycerol ether metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0015035 protein disulfide oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976633.1 True 1460 mRNA 0.47 8 4654146 4670585

Neighbor

gene id symbol gene type direction distance location
LOC110523122 onecut2 coding upstream 55370 4561350 ~ 4598776 (+)
grin3a LOC106572512 coding upstream 1019031 3547948 ~ 3635115 (+)
musk musk coding upstream 1324880 3258931 ~ 3329266 (+)
si:busm1-57f23.1 LOC106572555 coding upstream 1505556 3140042 ~ 3148590 (+)
LOC110524930 LOC106572564 coding upstream 1546907 3032849 ~ 3107239 (+)
tcf4 tcf4 coding downstream 237874 4908459 ~ 5339341 (+)
LOC110524934 LOC106572350 coding downstream 746883 5417468 ~ 5458865 (+)
LOC110524936 NA coding downstream 906429 5577014 ~ 5577940 (+)
LOC110522836 LOC105008486 coding downstream 1002064 5672649 ~ 5760948 (+)
LOC110523126 LOC106572095 coding downstream 1817817 6488402 ~ 6555494 (+)
G360280 NA non-coding upstream 35956 4615016 ~ 4618190 (+)
G360321 NA non-coding upstream 66274 4587403 ~ 4587872 (+)
G360297 NA non-coding upstream 75522 4578268 ~ 4578624 (+)
G360310 NA non-coding upstream 99926 4553611 ~ 4554220 (+)
G360292 NA non-coding upstream 131869 4519335 ~ 4522277 (+)
G360673 NA non-coding downstream 45521 4716106 ~ 4716757 (+)
G360680 NA non-coding downstream 49463 4720048 ~ 4720485 (+)
G360681 NA non-coding downstream 50029 4720614 ~ 4720825 (+)
G360694 NA non-coding downstream 59012 4729597 ~ 4729842 (+)
G360696 NA non-coding downstream 62349 4732934 ~ 4733148 (+)
G360276 sync other upstream 6146 4639016 ~ 4648000 (+)
G360287 NA other upstream 106290 4547035 ~ 4547856 (+)
G360261 NA other upstream 234077 4419741 ~ 4420069 (+)
G360234 NA other upstream 308629 4344082 ~ 4345517 (+)
G360121 NA other upstream 642790 4008748 ~ 4011356 (+)
G360985 NA other downstream 626285 5296870 ~ 5299403 (+)
G361671 NA other downstream 1133243 5803828 ~ 5927926 (+)
G362297 zbtb43 other downstream 2515341 7185926 ~ 7189819 (+)
G362554 NA other downstream 3019855 7690440 ~ 7692514 (+)
G362662 NA other downstream 3248337 7918922 ~ 7919565 (+)

Expression


Co-expression Network