LOC110523127 (LOC106572117)


Basic Information

Item Value
gene id LOC110523127
gene name LOC106572117
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 6505381 ~ 6510017 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601542.2
TGGCTACCGTGGCATTGACGTCAGTTTCTGGGTGCGGAAACTCTCAACAACAAAAAGAAAGACTAGAGACAGTAAAGAGGAACAAACAGAAGAGGTTAGGACCGTAGAAAATGTCGATATAACTAACATTACAGagaaaGACATTCAGATTGCTGTAACCGAGTCCAGACATGGAAACTGTGAAACTTATGAGGGAGTTGATAGCCAATTTTGAACAGGAGAGGAATTATCTTCCGAAGGAAACAGGACTCCGCTTAATCGAATCGACTGGAGAGAATGACAGCAGGGGAATATCAGCTAAATGTAGGGACACCAAAGTGGAGGACCTCTGGAGCCTGACTAGTTTCTTTGGGTACAGTACACAGACTTTCGTTCTGGCAGTCAACCTGTTGGATCGATTCCTGGCCATGATGAAGGTCCAACCCAAACATCTAGCTTGCGTCGGCATCAGCTGCCTCCACATCGCAGCCAAAGCAGTCGAAGAGTGTAACTTGTCTTCCACCAATGAGCTTATTCGTATCAGCCAGTGCAAGTTTACGGTCTCGGACCTCACTCGCATGGAGAAGATCGTTTCAGAGAAACTCAACTTCCAACTCAAAACCATCACAGCCTTAACGTTTTTGCACCTATACCACGGAATCACAAGCGCCCATACCTCAGACCTGAAGGAGGCCCTGAATCTCGACATACTAGAGGTCCAGCTCAAAGCCTGTCTCTGCCGGATCGCGTTCTCCAAAGCTAAACCGTCAGTCTTGGCCCTGTCACTCCTCACTCAGGAGATCGAAGCCATGCAGTCTGTTGATATGTTAGAAATAGCACATCATGTTCAAAGACATCTCAAGATCACCGACGTTGAGCTGCTACACTGGAAGGGACTAGTGGCCAAGTGTATGTCCGACTACTCTTCTCCCGAATGTAGCAAACCCAACAATAAAAAGCTTGTCTGGATCGTGTCGAGAAGGACAGCTCAGAATCTTCACACCAGCTACTACAGCGTCCCTGAACTGCCAACCATTCCCGAGGACTGCTGGGATCAGGGTGAAAGTGAAGACTCATGTGAAGACATGAGTTCGGGGGAGGAGAGCCTGAGCAGTTCCCTGGGCTCTGACGCGGAGGGGCCTTACTTCCCTCTAAACTTCCTCTGCTAAAAACCCCACAACAAATACCTCCTAGACCAAAGCCCTCTTGAGGGAGCCACTGTGCCTGGGTTACATAACCACCTCTTCTATTGCAGGGTCATGCTCATTTAATTCAAAACGTAGCTAAAAGTTTTACAACAGTTAAACAAGCGGTCATTGGGCACGTTCAGGCTTGTCCCTCCCTGTGACGGTCTATTTTGTTCATAGTGAATACGAACCAGAAAATAGCTTCTCTATATACCGTAGTAAATGTTTGTTAGCCTTCTATAGGGGCTACCAGTGTGGCTTATTACAGAAAACCAATCAATATACAGCGTATTTTAAGCTAACAACAAAACATACAGAAATGTGAGTTTGCACAATCCTGAAGACAGGCAGCTAAATGAAATTTCTGTAGTGTGGAGCATGTTTGGATTTGTCTCACATTCCAGCCACTATatatctgtcccaaatggcaccctctatagcgcactacttttgaccagagccctgtgtgtcctggtcagaagtagtgcactagaaagggaaataaggtgccatttggtgAAAACACTTCTCTGAAGTGGCTGGATTTGTCTCGCATTAACCTGGTTAAAAACTTACTTAGGCCAGTTTCTGTATAACGAGTTGTGTTGACTGGTGGCCAGGCTAGTTAGCGCTAAACTGTAAAAGCCAAAGTCTGTTTCTCTTATTCCtattagagagtgtgtgtgactaTGATCTTGTTAAACTTCAAATGTGCCAATTTGTTGGCTGTAGGTTCTTAAATTATTTGGATTGTATGTATGTGAGAAAGATAATGTATATATGATGTCATGAATGTACAAaaccgtttaaaaaaaatgtaaatttgtaaaaaaatgtacaaaaaaaaagcATTGTGAATAGTACCTTTGTAGATATAAACTTATTTTTGCCTGTGAGCTATGACAACATTAAAATACTTTTGAAATCAC

Function

NR:

description
cyclin-G2-like isoform X2

GO: NA

KEGG:

id description
K10146 CCNG2; cyclin G2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601542.2 True 2095 mRNA 0.44 8 6505381 6510017

Neighbor

gene id symbol gene type direction distance location
LOC110524940 LOC106572087 coding downstream 21091 6437266 ~ 6484290 (-)
LOC110523124 wdr7 coding downstream 68534 6093969 ~ 6436847 (-)
LOC110523123 LOC106572171 coding downstream 550694 5945164 ~ 5954687 (-)
LOC110524935 rab27b coding downstream 941016 5471029 ~ 5564365 (-)
nars1 sync coding downstream 1857429 4639020 ~ 4647952 (-)
LOC110524941 LOC106572051 coding upstream 53606 6562531 ~ 6726634 (-)
LOC110523129 NA coding upstream 245736 6755753 ~ 6763633 (-)
LOC110524942 LOC106572043 coding upstream 265388 6775405 ~ 6860173 (-)
LOC110523130 ralgps1 coding upstream 357861 6867878 ~ 7163472 (-)
LOC118964555 NA coding upstream 365299 6875316 ~ 6875924 (-)
G363491 NA non-coding downstream 10156 6493086 ~ 6495225 (-)
G363417 NA non-coding downstream 185593 6318686 ~ 6319788 (-)
G363404 NA non-coding downstream 217769 6286744 ~ 6287612 (-)
G363394 NA non-coding downstream 236852 6268004 ~ 6268529 (-)
G363382 NA non-coding downstream 261978 6242902 ~ 6243403 (-)
G363515 NA non-coding upstream 63391 6573408 ~ 6575248 (-)
G363550 NA non-coding upstream 164825 6674842 ~ 6675971 (-)
G363559 NA non-coding upstream 183107 6693124 ~ 6694454 (-)
G363565 NA non-coding upstream 205872 6715889 ~ 6716306 (-)
G361170 NA other downstream 1423513 5080578 ~ 5081868 (-)
G360703 NA other downstream 1765679 4738312 ~ 4739702 (-)
G360610 NA other downstream 1954454 4550346 ~ 4550927 (-)
G360532 NA other downstream 2205356 4299392 ~ 4300025 (-)
G363470 LOC106572095 other upstream 33658 6543675 ~ 6554715 (-)
G364322 NA other upstream 1793250 8303267 ~ 8304183 (-)
G364754 NA other upstream 2537525 9047542 ~ 9099000 (-)
G365752 NA other upstream 2679652 9189669 ~ 9190098 (-)

Expression


Co-expression Network