LOC110523130 (ralgps1)


Basic Information

Item Value
gene id LOC110523130
gene name ralgps1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 6867878 ~ 7163472 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976683.1
TTAGCCGTCAGGTTAAGTGCACCTACCTGACACTTCCTGCTGTCGTCGTTATGGGTTTTTCCTTTCATGCGCGTGGATGACGTTTCTTACATATATATCACTGCCATGTTTGTATGCCTTCATCAGATGTATTCAATTAGAATTTCCACGTCCTCCGGCTGAAGCGCTGCGACCTTGGGTATTAACTCACATTTGGAGGAATATTGGTTGCGAGGTAGTTTAGCCTGCATACGATAGGCCTACTACAAAGATTGGATTGTGATTTGGTGGTTGGAGTTTTTATTTTCGTTTACGTTACCCAGTTGATACAGCAGTGAGACGCAACAGCGAGGGACTGACCCTCGTATTTGTAGAGATATGGATGAGAGGTCATGTGTGCTGTCCAGCTAAGGGCCCTGGTCGCCCCCCCATCCCCCCGCTGCACGTTGTCGTGAGCATGTACCGTAGGAACGGTCTCTCGGATGGCGCCAGCATTAACTCCGCCTCCTCAGTGGGAAGCAGCAGCTCGGACTCTCTGGATGGGCCGGGCTTGGACTTCTCCAAGAGTTACGATGCCGTTGTGTTTGACGTGCTGAAGGTGACGCCCGAGGAGTTTGCTGGTCAAATCACATTGATGGATGCTCCAGTATTCAAAGCAATACATCCAGAGgagCTGGCTAGCTGTGGATGGAACAGGAAGGAGAAACACCGGCTGGCGCCCAACGTGGTGGCGTTTACACGGAGGTTCAACCAGGTTAGCTTTTGGCTGGTGAGAGAAATTTTGACTGCCCAGACACTGAAGATCCGAGCAGAAATACTGAGCCATTTTGTTAAAATAGCCAAGAAACTGTTGGAGCTGAATAACCTCCACTCCATGGTGTCTGTGGTGTCAGCCCTGCAAAGCGCTCCCATCTTCAGGCTGAGCAAGACCTGGGCGCTGATCAGCCGGAAGGACAAGACCACGTTTGAGAAGCTGGACTTCTTGACATCCAAAGAGGACAACTACACGCGCATGAGGGAGTACATCCGTTCTCTCAAGATAACACCATGCATCCCCtacctggGCATCTACCTATTGGACATGATCTACATCGACTCGGCCTATCCAGCATCGGATAGCATCATTGAGACAGAGCAGAGGACCAATCAGATGAACAATTTGCTCAGGGTGATCTCTGACCTGCAGATGTCCTGTAAATATGATCACCTGGTGACCCTCCCCCATGTTCAGAAGTATTTAATGTCCGTGCGCTATATCGAGGAGCTTCAGAAGTTCGTAGAGGACGACAACTTCAAGCTTTCTCTGAAGATCGAACCTATGCACGGCTCCCCGCGCATGGCCTCATCCAAGGAAGACCTAGCAGGTCCGTCGGATGTGTCTGCCTCTGTGAGGTACAACTACCGGCGACCCACCTGTCCCGACGCCTCGGTGATGGTGCACAtgcccacccctcccccctctcgcCACAGGAAGAGCCACAGCCTAGGCAACAATATGATGGCGTACGGCATGGTGGAGAGTAAGAGCGCCACGTTCCCCATTGAGAAGCCACGCCACCTGTTGGATGACAGCTTCCTGGAGTCCCAGAGCCCAGCTCGAAATGACCCACACAGCATGGCCATATCTAACGGCATGTCTttagGCAGCAGTGAAAGCTCATTCGGCGAGGAACTCTCGCCAGGGATGGAAAGGGGACGCATGTATGCCACACTGGGCCCCAACTGGAAGGTCCCTCTACGTAATTCACCTCGGAGCCGCAGCTATGTTTACAGcCCCTCGGGTGCCAACCCGTGCCACGGGTGCAGCGAGGTGGGCAGTGTTACTATCGAGGGGCCCCTTCGGAGGAAGACCCTGCTGAAAGAGGGCCGAAAACCCAAGTTGTCATCGTGGACACGCTTTTGGATCACTCTGTCTGGTTCGACGCTGACGTTCTACGGGGCCAAAGCCTTGAGGGCCTCCGAGAGGAAGCATTACAAATCTTCAGCCTGTAAGAAGGTGTGTGTAACGGGCTGGATGGTTGTCCTGCCTGACGACCCGGCTCGACCGAACATCTTCCACCTCAACGACCCGGATAAAGGTAATGTTTACAAGTTCCAGACGGGATCCAGATTCTCTGCAATCATCTGGCACAAAAACCTGGAAGAGGCTTGCAGGAGCTGTAGACCTCAGATACCAACCAACCTAATGTCATTTGAGTAGTGGACAACCAGCCAGCTTGCCCAGTGGGGAGTTAGTGCCAAGCCCTTTTCTATGGGAGTCTAACAAACTCTGATAAAATGGTGGAACGGAGGAATTGGTTGGAATCCTATGAAATGAGTGGTGAGGAAgtgtagaagtgtgtgtgtgtctgattctACAGACTGGGGCAGATGCTCTTTACcactggggacacacacacacacagcagcgtTATAGCCAAGGACTACGTGCGATGTCTCTCTTTCCAGAGCAAGGAAAACAAATATGTAAAGCCCCTGTTTCGTGTCAAAGCTTTCTCGCTTGTCGTCGTTTGTTCCGCTGCTATAAACGTTCTGAGCAAGCTCATATTTCTTTGGCCCATGTTGGGTTTTGCTTAGAAGAAAGGATTAAAAAAAATACCTGTAAATGCACAAAGACTGACAGTGTTAAGAAACTGTGATAAGGGGACCAGTGACTTGGGCCCTTGGAGTATCAGCACTGCCATGGCCCCCTAACTATTTGAGCCAATGTTTCAGACCACTGTTGACTGGACACTTTGCAAAACACACGCTAGATTGATGCTCATTGTCGACCCTGGTCCTTACGTCAGGCAGTGGACTGATACTCATCGTCGACCCTGGTCCTTGCGTCAGGCAGCGGACTGATGCTCATCGTCGACCCTGGTCCTTGCGTCAGGCAGCGGACTGATGCTCATCGTCGACCCTGGTCCTTGCGTCAGGCAGCGGACTGATACTCATCGTCGACCCTGGTCCTTGCGTCAGGCAGTGGACTGATACTCATTGTCGACCCTGGTCCTTGCGTCAGGCAGCGGACTGATACTCATCGTCGACCCTGGTCCCTGCGTCAGGCAGCGGACTGATACTCATCGTCGACCCTGGTCCCTGCGTCAGGCAGCGGACTGATACTCATCGTCGACCCTGGTCCTTGCGTCAGGCAGCGGACTGATACTCATCGTCGACCCTGGTCCCTGCGTCAGGCAGCGGACTGATACTCATCGTCGACCCTGGTCCCTGCGTCAGGCAGCGGACTGATACTCATCGTCGACCCTGGTCCTTGCGTCAGGCAGTGGACTTTACAGCAAAAGTCATGACTCGTTGAGTTTTCAAATAAGGGAGAAAGGACTTGGCTTTCTGAACAACTAGTTATTTAACATACAAAGGCTCAGCCAAACCTGAACCACCCCCTGCTCAGTCAAACCACACTATTTACTATAGCCATACAAACAATGTCTGCCGATTTAAagacccatttttttttttttttaactccaaGTAGGTTGAGCAAGAAAAGCCTTTATCACCATTCGTCATCTCATCTGAACCAATAAAGACTTTTCTACCAATCAGAaatgaaacaaacacacaggaagaagaaaaaaaaaaacgtatgttGCACTTTTTTGTCATAACATTTTAAGTTTGATTcacaactttattgtccatcAAA
>XM_036976684.1
TTAGCCGTCAGGTTAAGTGCACCTACCTGACACTTCCTGCTGTCGTCGTTATGGGTTTTTCCTTTCATGCGCGTGGATGACGTTTCTTACATATATATCACTGCCATGTTTGTATGCCTTCATCAGATGTATTCAATTAGAATTTCCACGTCCTCCGGCTGAAGCGCTGCGACCTTGGGTATTAACTCACATTTGGAGGAATATTGGTTGCGAGGTAGTTTAGCCTGCATACGATAGGCCTACTACAAAGATTGGATTGTGATTTGGTGGTTGGAGTTTTTATTTTCGTTTACGTTACCCAGTTGATACAGCAGTGAGACGCAACAGCGAGGGACTGACCCTCGTATTTGTAGAGATATGGATGAGAGGTCATGTGTGCTGTCCAGCTAAGGGCCCTGGTCGCCCCCCCATCCCCCCGCTGCACGTTGTCGTGAGCATGTACCGTAGGAACGGTCTCTCGGATGGCGCCAGCATTAACTCCGCCTCCTCAGTGGGAAGCAGCAGCTCGGACTCTCTGGATGGGCCGGGCTTGGACTTCTCCAAGAGTTACGATGCCGTTGTGTTTGACGTGCTGAAGGTGACGCCCGAGGAGTTTGCTGGTCAAATCACATTGATGGATGCTCCAGTATTCAAAGCAATACATCCAGAGgagCTGGCTAGCTGTGGATGGAACAGGAAGGAGAAACACCGGCTGGCGCCCAACGTGGTGGCGTTTACACGGAGGTTCAACCAGGTTAGCTTTTGGCTGGTGAGAGAAATTTTGACTGCCCAGACACTGAAGATCCGAGCAGAAATACTGAGCCATTTTGTTAAAATAGCCAAGAAACTGTTGGAGCTGAATAACCTCCACTCCATGGTGTCTGTGGTGTCAGCCCTGCAAAGCGCTCCCATCTTCAGGCTGAGCAAGACCTGGGCGCTGATCAGCCGGAAGGACAAGACCACGTTTGAGAAGCTGGACTTCTTGACATCCAAAGAGGACAACTACACGCGCATGAGGGAGTACATCCGTTCTCTCAAGATAACACCATGCATCCCCtacctggGCATCTACCTATTGGACATGATCTACATCGACTCGGCCTATCCAGCATCGGATAGCATCATTGAGACAGAGCAGAGGACCAATCAGATGAACAATTTGCTCAGGGTGATCTCTGACCTGCAGATGTCCTGTAAATATGATCACCTGGTGACCCTCCCCCATGTTCAGAAGTATTTAATGTCCGTGCGCTATATCGAGGAGCTTCAGAAGTTCGTAGAGGACGACAACTTCAAGCTTTCTCTGAAGATCGAACCTATGCACGGCTCCCCGCGCATGGCCTCATCCAAGGAAGACCTAGCAGGTCCGTCGGATGTGTCTGCCTCTGTGAGGTACAACTACCGGCGACCCACCTGTCCCGACGCCTCGGTGATGGTGCACAtgcccacccctcccccctctcgcCACAGGAAGAGCCACAGCCTAGGCAACAATATGATGGCGTACGGCATGGTGGAGAGTAAGAGCGCCACGTTCCCCATTGAGAAGCCACGCCACCTGTTGGATGACAGCTTCCTGGAGTCCCAGAGCCCAGCTCGAAATGACCCACACAGCATGGCCATATCTAACGGCATGTCTttagGCAGCAGTGAAAGCTCATTCGGCGAGGAACTCTCGCCAGGGATGGAAAGcCCCTCGGGTGCCAACCCGTGCCACGGGTGCAGCGAGGTGGGCAGTGTTACTATCGAGGGGCCCCTTCGGAGGAAGACCCTGCTGAAAGAGGGCCGAAAACCCAAGTTGTCATCGTGGACACGCTTTTGGATCACTCTGTCTGGTTCGACGCTGACGTTCTACGGGGCCAAAGCCTTGAGGGCCTCCGAGAGGAAGCATTACAAATCTTCAGCCTGTAAGAAGGTGTGTGTAACGGGCTGGATGGTTGTCCTGCCTGACGACCCGGCTCGACCGAACATCTTCCACCTCAACGACCCGGATAAAGGTAATGTTTACAAGTTCCAGACGGGATCCAGATTCTCTGCAATCATCTGGCACAAAAACCTGGAAGAGGCTTGCAGGAGCTGTAGACCTCAGATACCAACCAACCTAATGTCATTTGAGTAGTGGACAACCAGCCAGCTTGCCCAGTGGGGAGTTAGTGCCAAGCCCTTTTCTATGGGAGTCTAACAAACTCTGATAAAATGGTGGAACGGAGGAATTGGTTGGAATCCTATGAAATGAGTGGTGAGGAAgtgtagaagtgtgtgtgtgtctgattctACAGACTGGGGCAGATGCTCTTTACcactggggacacacacacacacagcagcgtTATAGCCAAGGACTACGTGCGATGTCTCTCTTTCCAGAGCAAGGAAAACAAATATGTAAAGCCCCTGTTTCGTGTCAAAGCTTTCTCGCTTGTCGTCGTTTGTTCCGCTGCTATAAACGTTCTGAGCAAGCTCATATTTCTTTGGCCCATGTTGGGTTTTGCTTAGAAGAAAGGATTAAAAAAAATACCTGTAAATGCACAAAGACTGACAGTGTTAAGAAACTGTGATAAGGGGACCAGTGACTTGGGCCCTTGGAGTATCAGCACTGCCATGGCCCCCTAACTATTTGAGCCAATGTTTCAGACCACTGTTGACTGGACACTTTGCAAAACACACGCTAGATTGATGCTCATTGTCGACCCTGGTCCTTACGTCAGGCAGTGGACTGATACTCATCGTCGACCCTGGTCCTTGCGTCAGGCAGCGGACTGATGCTCATCGTCGACCCTGGTCCTTGCGTCAGGCAGCGGACTGATGCTCATCGTCGACCCTGGTCCTTGCGTCAGGCAGCGGACTGATACTCATCGTCGACCCTGGTCCTTGCGTCAGGCAGTGGACTGATACTCATTGTCGACCCTGGTCCTTGCGTCAGGCAGCGGACTGATACTCATCGTCGACCCTGGTCCCTGCGTCAGGCAGCGGACTGATACTCATCGTCGACCCTGGTCCCTGCGTCAGGCAGCGGACTGATACTCATCGTCGACCCTGGTCCTTGCGTCAGGCAGCGGACTGATACTCATCGTCGACCCTGGTCCCTGCGTCAGGCAGCGGACTGATACTCATCGTCGACCCTGGTCCCTGCGTCAGGCAGCGGACTGATACTCATCGTCGACCCTGGTCCTTGCGTCAGGCAGTGGACTTTACAGCAAAAGTCATGACTCGTTGAGTTTTCAAATAAGGGAGAAAGGACTTGGCTTTCTGAACAACTAGTTATTTAACATACAAAGGCTCAGCCAAACCTGAACCACCCCCTGCTCAGTCAAACCACACTATTTACTATAGCCATACAAACAATGTCTGCCGATTTAAagacccatttttttttttttttaactccaaGTAGGTTGAGCAAGAAAAGCCTTTATCACCATTCGTCATCTCATCTGAACCAATAAAGACTTTTCTACCAATCAGAaatgaaacaaacacacaggaagaagaaaaaaaaaaacgtatgttGCACTTTTTTGTCATAACATTTTAAGTTTGATTcacaactttattgtccatcAAA
>XM_036976685.1
TTAGCCGTCAGGTTAAGTGCACCTACCTGACACTTCCTGCTGTCGTCGTTATGGGTTTTTCCTTTCATGCGCGTGGATGACGTTTCTTACATATATATCACTGCCATGTTTGTATGCCTTCATCAGATGTATTCAATTAGAATTTCCACGTCCTCCGGCTGAAGCGCTGCGACCTTGGGTATTAACTCACATTTGGAGGAATATTGGTTGCGAGGTAGTTTAGCCTGCATACGATAGGCCTACTACAAAGATTGGATTGTGATTTGGTGGTTGGAGTTTTTATTTTCGTTTACGTTACCCAGTTGATACAGCAGTGAGACGCAACAGCGAGGGACTGACCCTCGTATTTGTAGAGATATGGATGAGAGGTCATGTGTGCTGTCCAGCTAAGGGCCCTGGTCGCCCCCCCATCCCCCCGCTGCACGTTGTCGTGAGCATGTACCGTAGGAACGGTCTCTCGGATGGCGCCAGCATTAACTCCGCCTCCTCAGTGGGAAGCAGCAGCTCGGACTCTCTGGATGGGCCGGGCTTGGACTTCTCCAAGAGTTACGATGCCGTTGTGTTTGACGTGCTGAAGGTGACGCCCGAGGAGTTTGCTGGTCAAATCACATTGATGGATGCTCCAGTATTCAAAGCAATACATCCAGAGgagCTGGCTAGCTGTGGATGGAACAGGAAGGAGAAACACCGGCTGGCGCCCAACGTGGTGGCGTTTACACGGAGGTTCAACCAGGTTAGCTTTTGGCTGGTGAGAGAAATTTTGACTGCCCAGACACTGAAGATCCGAGCAGAAATACTGAGCCATTTTGTTAAAATAGCCAAGAAACTGTTGGAGCTGAATAACCTCCACTCCATGGTGTCTGTGGTGTCAGCCCTGCAAAGCGCTCCCATCTTCAGGCTGAGCAAGACCTGGGCGCTGATCAGCCGGAAGGACAAGACCACGTTTGAGAAGCTGGACTTCTTGACATCCAAAGAGGACAACTACACGCGCATGAGGGAGTACATCCGTTCTCTCAAGATAACACCATGCATCCCCtacctggGCATCTACCTATTGGACATGATCTACATCGACTCGGCCTATCCAGCATCGGATAGCATCATTGAGACAGAGCAGAGGACCAATCAGATGAACAATTTGCTCAGGGTGATCTCTGACCTGCAGATGTCCTGTAAATATGATCACCTGGTGACCCTCCCCCATGTTCAGAAGTATTTAATGTCCGTGCGCTATATCGAGGAGCTTCAGAAGTTCGTAGAGGACGACAACTTCAAGCTTTCTCTGAAGATCGAACCTATGCACGGCTCCCCGCGCATGGCCTCATCCAAGGAAGACCTAGCAGCTGTGTTTCCAGAGAACGTTCTCGAATAACAGACAGACATCGGAAGTATTTGGAGACGAGAGACTCAGCCAAGGCCTAAGCACATGCCTCTCATTAACACGATGCTACAGCCAGTTAGCCTTCACCACAAGGGGAAAACGTACGAGAGTCACACGGGAAGTCCACATAGTCCCCTTGGGTCTGCCTAAAACCAGCTGACCGTCCAGACCGACTACGGTCCCCATGCGGCCACAGTAGAGTTTACGAGTTGAAGACGGAGCCGGGTACACGTGGCAAGGCATGCCTTCAGGATAACTTGTTAGACTGAGCGCTGCCCCACACAGAAGCAGCTCTTCAAGTCTTAATTTGGGCAGTTGTAGGAAGTTGATTGCTCCAGGATGTGGAATCTGGATTTATTGTCCTTTATGTACCGTAGGCTGCTACTTCTACAAGTGAATCTTTGCTTCGACCTGGTGTCCCTGACTTCATATAATTTCACAGAGGTTGCCTTAACTTTTTTCACAGtttgttacatttcagccttgttctaaaatggattcatttttat

Function

symbol description
ralgps1 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be located in cytoplasm and plasma membrane. Orthologous to human RALGPS1 (Ral GEF with PH domain and SH3 binding motif 1).

NR:

description
PREDICTED: ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X2

GO: NA

KEGG:

id description
K24023 RALGPS; Ras-specific guanine nucleotide-releasing factor RalGPS

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976683.1 False 3625 mRNA 0.51 20 6867878 7163472
XM_036976684.1 False 3544 mRNA 0.51 19 6867878 7163472
XM_036976685.1 True 1890 mRNA 0.50 12 6891066 7163472

Neighbor

gene id symbol gene type direction distance location
LOC110524942 LOC106572043 coding downstream 7705 6775405 ~ 6860173 (-)
LOC110523129 NA coding downstream 104245 6755753 ~ 6763633 (-)
LOC110524941 LOC106572051 coding downstream 141244 6562531 ~ 6726634 (-)
LOC110523127 LOC106572117 coding downstream 357861 6505381 ~ 6510017 (-)
LOC110524940 LOC106572087 coding downstream 383588 6437266 ~ 6484290 (-)
LOC110523134 zbtb43 coding upstream 24426 7187898 ~ 7194434 (-)
LOC110523135 lmx1b coding upstream 108846 7272318 ~ 7367797 (-)
mvb12ba mvb12b coding upstream 231341 7394813 ~ 7436919 (-)
LOC110523137 pbx3 coding upstream 429890 7593362 ~ 7722127 (-)
LOC110524943 fbn2 coding upstream 718917 7882389 ~ 8204518 (-)
G363586 NA non-coding downstream 667 6864889 ~ 6867211 (-)
G363605 NA non-coding downstream 37590 6828077 ~ 6830288 (-)
G363581 NA non-coding downstream 114977 6752412 ~ 6752901 (-)
G363565 NA non-coding downstream 151572 6715889 ~ 6716306 (-)
G363559 NA non-coding downstream 173424 6693124 ~ 6694454 (-)
G363781 NA non-coding upstream 3917 7167389 ~ 7168398 (-)
G363760 NA non-coding upstream 18228 7181700 ~ 7182338 (-)
G363759 NA non-coding upstream 22647 7186119 ~ 7186755 (-)
G363788 NA non-coding upstream 26717 7190189 ~ 7190510 (-)
G363789 NA non-coding upstream 27496 7190968 ~ 7191251 (-)
G363470 LOC106572095 other downstream 313163 6543675 ~ 6554715 (-)
LOC110523123 LOC106572171 other downstream 913627 5945164 ~ 5954687 (-)
G361170 NA other downstream 1786010 5080578 ~ 5081868 (-)
G360703 NA other downstream 2128176 4738312 ~ 4739702 (-)
G364322 NA other upstream 1139795 8303267 ~ 8304183 (-)
G364754 NA other upstream 1884070 9047542 ~ 9099000 (-)
G365752 NA other upstream 2026197 9189669 ~ 9190098 (-)
G368612 ctxn3 other upstream 4970580 12134052 ~ 12136790 (-)
G368921 NA other upstream 5542094 12705566 ~ 12706092 (-)

Expression


Co-expression Network