LOC110523134 (zbtb43)


Basic Information

Item Value
gene id LOC110523134
gene name zbtb43
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 7187898 ~ 7194434 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601548.2
TGATGACGTGGGCTGAAAGATTTCCAGTGGAACTCGGAAGAGAAGCGACTGTTGTATTCTAAATCAAGAGATAGAAATGAAATCGAAGATCTAGACCCCTGGCTGCCATGGAGTCTGAGGGGAATGTGCTCCGCGTGGACTTCCCAAACTTCTCCGGAACCATGCTGCAGAAGCTCAACCAGCAGCGGCAGAGGGGCCAGCTCTGTGACATCATCGTAGTCATCCAGGGACACCAGTACCGTGCTCACCGGGCCATCTTGGCCGCCAGTTCGCCCTACTTTTGCGACCAAGTGCTCCTTAAAAACAGTGCCCGCTGCGTTTTACCTGACGTCATGCACCCGTGCGTGTTCGAACGTCTCCTCCTCTCTTGCTACACGGGCACCCTGCACCTACCTGCCGGCGAGGTGGTAGCTTTCCTCACGGCAGCTAGCTTCCTCCAGATGTGGCACGTGGTGGACAAATGCACTGAGCTCTTAGAGGTGGTAGGAAGCGGCGCTAGCACATTAGTGCACAAGTCTTCTGGTGGGCTGAGGGACAGGCCTTTCCCTGGGGACAGTAACTACCACAGCCCTGGGGACGGCTCCATGGGCCTGgaggatggtggaggaggaggagcagtagAGGGCTTTGCCAAAATGGAGATGGACCAGCTCCTGGAGAACAGCTTCTCCCCTCCCACTCTGGAGAACAACAGCACCCAGCCCAGCGGAAGCTGCTCGCCACCGGTCGACCACGATGGCTCAGGTAGTGAGGTCGCCAGCCAGGATGGGGACGTTGAAGAGGGTGGCGAGGGGGACTACCAGTACTCCAGACCTGCCTATGTCCCACCCAGCATCATGGGCCACAGGAAATGGGTCCACGTAAAGTCAGAAAGGCGCGCAGATTGCAAGGGCGATGTGGCCCTCTTTAGCGGGGACCCTGCTGTCACTGACCCTGAGCAGCTGAAACTTACCCACTCCCAGGCCTCAGCCAGCAGGAGCTCCCTGGACCACGGCATTGATGAGAAACCGGTGGCTCAGCTGGAGGAGAGCCTGGAGGAGGATCCTCTGGACTTCTACGGTACCTCCATAGAGGGCTTCTCCACCGACAAGGCCGACGGGACACCGCTTGGACTGAAAGAGGACCTGTTAGAAGAGGCAACCGGGGTTGAGgagagtggtggtggaggagaaggAACCCCTGGTGGCCTCCAGGAAGAGACCTCCCACTCTGGCTTCGCCTCAGTGGTCTACAAGCTGTACCCCTGCCAGTGTGGCAAGAGCTTCACTCACAAGAGCCAGCGGGACCGGCACATGAGCATGCACCTGGGCTTGCGGCCGTACGGCTGCGCCGTGTGTGGCAAAAGTTTCAAGATGAAACACCACCTGGTCGGCCACATGAAGATTCACACGGGCGTCAAGCCCTACGAGTGCAGCCTGTGCGCCAAACGCTTCATGTGGCGGGACAGCTTCAACCGTCACACGTCCTCCTGCACCAGGGTCCATCAGGCCCGGTGCGCCGTCAACGAACAGGCCGCCCAGATCTGCTGATCTCGGATGTTATTTCCAAACCACCATTCACCTCGTCTCCCTCCCACCTCCACCACTATCCCATATCAGTTTCACTGAATAGGCTGCTCAGATGTGCCTGTCCCGGGATCAGATTAAGACCGTGCTGCTTGGATGACCACCTTCCAATCAGTTTAGCTGGATTTAGAATTATATATCCGAGCAGCGGCCTGAGCCACCGACGCATCACATGTAACTGATCCAAGATCAGAATCCTGGAAAGCTTTGTAGTCTGGTCAGATCTGCTTGTGTGGAATCAGGACCTTAGGTCCTGCGGTGTGTGGACTGCTATACAgggcattctgaaagtattcagaccccttgacttttttctaattatgttacgtttcagccttattctaaagtgtaTTAAATCAAATTTGTATTCCCcttatcaatttacacacaagaccccataatgacaaagcaaaaacaggtttttgctaatttattaaaaataaaacacgtaaatatcacatttaaataagtattc

Function

symbol description
zbtb43 Predicted to enable RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZBTB43 (zinc finger and BTB domain containing 43).

NR:

description
zinc finger and BTB domain-containing protein 43-like

GO: NA

KEGG:

id description
K10514 ZBTB43; zinc finger and BTB domain-containing protein 43

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601548.2 True 2040 mRNA 0.55 2 7187898 7194434

Neighbor

gene id symbol gene type direction distance location
LOC110523130 ralgps1 coding downstream 24426 6867878 ~ 7163472 (-)
LOC118964555 NA coding downstream 311974 6875316 ~ 6875924 (-)
LOC110524942 LOC106572043 coding downstream 327725 6775405 ~ 6860173 (-)
LOC110523129 NA coding downstream 424265 6755753 ~ 6763633 (-)
LOC110524941 LOC106572051 coding downstream 461264 6562531 ~ 6726634 (-)
LOC110523135 lmx1b coding upstream 77884 7272318 ~ 7367797 (-)
mvb12ba mvb12b coding upstream 200379 7394813 ~ 7436919 (-)
LOC110523137 pbx3 coding upstream 398928 7593362 ~ 7722127 (-)
LOC110524943 fbn2 coding upstream 687955 7882389 ~ 8204518 (-)
LOC110523142 LOC106571805 coding upstream 1012057 8206491 ~ 8229291 (-)
G363759 NA non-coding downstream 1143 7186119 ~ 7186755 (-)
G363760 NA non-coding downstream 5560 7181700 ~ 7182338 (-)
G363781 NA non-coding downstream 19500 7167389 ~ 7168398 (-)
G363763 NA non-coding downstream 53581 7132527 ~ 7134317 (-)
G363696 NA non-coding downstream 155917 7028954 ~ 7031981 (-)
G363833 NA non-coding upstream 76344 7270778 ~ 7272264 (-)
G363857 NA non-coding upstream 130971 7325405 ~ 7328512 (-)
G363834 NA non-coding upstream 194320 7388754 ~ 7393766 (-)
G363907 NA non-coding upstream 203305 7397739 ~ 7398688 (-)
G363944 NA non-coding upstream 303747 7498181 ~ 7498712 (-)
G363470 LOC106572095 other downstream 633183 6543675 ~ 6554715 (-)
LOC110523123 LOC106572171 other downstream 1233647 5945164 ~ 5954687 (-)
G361170 NA other downstream 2106030 5080578 ~ 5081868 (-)
G360703 NA other downstream 2448196 4738312 ~ 4739702 (-)
G364322 NA other upstream 1108833 8303267 ~ 8304183 (-)
G364754 NA other upstream 1853108 9047542 ~ 9099000 (-)
G365752 NA other upstream 1995235 9189669 ~ 9190098 (-)
G368612 ctxn3 other upstream 4939618 12134052 ~ 12136790 (-)
G368921 NA other upstream 5511132 12705566 ~ 12706092 (-)

Expression


Co-expression Network