LOC110523135 (lmx1b)


Basic Information

Item Value
gene id LOC110523135
gene name lmx1b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 7272318 ~ 7367797 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976687.1
AAAAGTGGTACTGGGAGGGCAAGGGGAGGGCTTCTCTCCAGTTGCCTCAATCTCGGCTTCGCCCTCTTCAAGAGACTGTTCACTCGGCATGGCACATTAACTTTAACGCTCACTTTGGAAGGAACCTCTCCACTCGACGTCTCTGGATTTACAGCACTTGCTTATTACTTAAATTTCTCTGCAATATTGTTATTTGGGAGTCGGAGAATTCACCAGAAACTCAACGCTTTGCGTCGACGCTATTATATATGTTTCCATCCCGCACGATATAGGGACACGCTAAACCACACTCTACATTGAGCAGGTGACAACCTTAAACCGTTCTTGACAAATGTGTTCCTTCGCTATGTCACGATTTAGTCTGTAACTTGAAACGTTTTTCATTGAACATACACCAATAGGCTATTTATCACCGCGCAGTAAAAGTACAAAAATCCCAAGTCGTGTCTATTAACTACTCTTTCCCCTGGTTTTGCCTCTGCAAAGAAGTTCAGTGTGCAACAAGGAGGGGTTTGGGGTGGAAAAGACCACACTGTCTGTGACCATACATTGTTATGGAAATTGCAACAGGTCTCGAATCATTGGAGAGACGCTTCTCGGCAAGGAATCATTCTTCTGCCTGTTCAAAGATGCTGGACGGTATTAAAATCGAAGATCATTTTAGAACGGGAGCGGCCACTTTGGGCGTTATGATCGGTGCTGAATGCCATCATCAGGCCGTCTGCGAGGGATGTCAGCGGCCTATATCCGACCGATTTCTGATGCGGGTCAACGAATCGTCGTGGCACGAGGAGTGTTTGCAGTGCGCAGTGTGTCAACAGCCGCTTACCACAACTTGCTACTTCAGAGATAGGAAACTCTACTGCAAAATTGACTACCAACAGCTGTTTGCCACCAAGTGCAGTGGTTGCCTGGAGAATATAGCTCCTACTGAGTTTGTGATGCGTGCCCTGGAGTGTGTGTACCACCTGGGCTGTTTCTGCTGCTGCGTGTGCGACAGGCAGCTGTGCAAAGGAGACGAGTTTGTCCTCAAGGAGGGCCAGCTGCTCTGCAAGAGCGACTACGAGAGGGAGAAGGAACTGCTCAGCTCCATGAGCCCTGATGCCTCAGATTCAGAAAAGAGTGAAGCTGAGGAGCTGGACGGGAAGCCTGAGAAGGGCTCTGGGGGCCAGGGGAAGGGCAGTGACGACGGGAAAGACCCTCGCCGTCCCAAACGGCCACGCACCATCCTGACCACACAGCAGAGGAGAGCCTTCAAGGCGTCCTTCGAGGTGTCCTCCAAACCCTGCCGGAAGGTTAGAGAGACGCTGGCGGCAGAGACAGGCCTTAGTGTCCGTGTCGTCCAAGTGTGGTTCCAGAACCAAAGAGCCAAGATGAAGAAGCTAGCCCGGAGACAGCAACAACAGCACGAGCAGCAGAACTCCCAAAGGCTAGGCCAAGAAGTGATGTCGGGTCGGATGGAGGGCCTGCTGAGCTCCTACACCCCCCTGGGCCCccctcagcagcagcagctagTGGCTATGGAGCAGAACGGCTACGGCACCGACCCCTTCCAGCATGGTCTCACCCCGCCACAGATGCCCGGAGACCACATGAACCCATACGGAAATGACTCCATTTTCCACGACATCGACAGCGACACGTCCCTCACCAGCCTCAGCGACTGTTTCATGGCAGCGTCCGACATTGGCTCCCTGCAGGTGCGGGTGGGGAACCCCATCGACCGTCTCTACTCCATGCAGAGCTCTTACTTTGCCTCCTGAAAGTCAACCCTGAACCGAAGGGGg
>XM_036976688.1
AAAAAGTGGTACTGGGAGGGCAAGGGGAGGGCTTCTCTCCAGTTGCCTCAATCTCGGCTTCGCCCTCTTCAAGAGACTGTTCACTCGGCATGGCACATTAACTTTAACGCTCACTTTGGAAGGAACCTCTCCACTCGACGTCTCTGGATTTACAGCACTTGCTTATTACTTAAATTTCTCTGCAATATTGTTATTTGGGAGTCGGAGAATTCACCAGAAACTCAACGCTTTGCGTCGACGCTATTATATATGTTTCCATCCCGCACGATATAGGGACACGCTAAACCACACTCTACATTGAGCAGGTCTCGAATCATTGGAGAGACGCTTCTCGGCAAGGAATCATTCTTCTGCCTGTTCAAAGATGCTGGACGGTATTAAAATCGAAGATCATTTTAGAACGGGAGCGGCCACTTTGGGCGTTATGATCGGTGCTGAATGCCATCATCAGGCCGTCTGCGAGGGATGTCAGCGGCCTATATCCGACCGATTTCTGATGCGGGTCAACGAATCGTCGTGGCACGAGGAGTGTTTGCAGTGCGCAGTGTGTCAACAGCCGCTTACCACAACTTGCTACTTCAGAGATAGGAAACTCTACTGCAAAATTGACTACCAACAGCTGTTTGCCACCAAGTGCAGTGGTTGCCTGGAGAATATAGCTCCTACTGAGTTTGTGATGCGTGCCCTGGAGTGTGTGTACCACCTGGGCTGTTTCTGCTGCTGCGTGTGCGACAGGCAGCTGTGCAAAGGAGACGAGTTTGTCCTCAAGGAGGGCCAGCTGCTCTGCAAGAGCGACTACGAGAGGGAGAAGGAACTGCTCAGCTCCATGAGCCCTGATGCCTCAGATTCAGAAAAGAGTGAAGCTGAGGAGCTGGACGGGAAGCCTGAGAAGGGCTCTGGGGGCCAGGGGAAGGGCAGTGACGACGGGAAAGACCCTCGCCGTCCCAAACGGCCACGCACCATCCTGACCACACAGCAGAGGAGAGCCTTCAAGGCGTCCTTCGAGGTGTCCTCCAAACCCTGCCGGAAGGTTAGAGAGACGCTGGCGGCAGAGACAGGCCTTAGTGTCCGTGTCGTCCAAGTGTGGTTCCAGAACCAAAGAGCCAAGATGAAGAAGCTAGCCCGGAGACAGCAACAACAGCACGAGCAGCAGAACTCCCAAAGGCTAGGCCAAGAAGTGATGTCGGGTCGGATGGAGGGCCTGCTGAGCTCCTACACCCCCCTGGGCCCccctcagcagcagcagctagTGGCTATGGAGCAGAACGGCTACGGCACCGACCCCTTCCAGCATGGTCTCACCCCGCCACAGATGCCCGGAGACCACATGAACCCATACGGAAATGACTCCATTTTCCACGACATCGACAGCGACACGTCCCTCACCAGCCTCAGCGACTGTTTCATGGCAGCGTCCGACATTGGCTCCCTGCAGGTGCGGGTGGGGAACCCCATCGACCGTCTCTACTCCATGCAGAGCTCTTACTTTGCCTCCTGAAAGTCAACCCTGAACCGAAGGGGg

Function

symbol description
lmx1b Enables DNA-binding transcription factor activity and sequence-specific double-stranded DNA binding activity. Involved in regulation of transcription, DNA-templated. Located in nucleus. Implicated in focal segmental glomerulosclerosis and nail-patella syndrome.

NR:

description
LIM homeobox transcription factor 1-beta-like

GO:

id name namespace
GO:0061386 closure of optic fissure biological_process
GO:0048752 semicircular canal morphogenesis biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060117 auditory receptor cell development biological_process
GO:0021592 fourth ventricle development biological_process
GO:0032474 otolith morphogenesis biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09371 LMX1; LIM homeobox transcription factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976687.1 False 1787 mRNA 0.53 8 7272318 7367796
XM_036976688.1 True 1522 mRNA 0.55 9 7272318 7367797

Neighbor

gene id symbol gene type direction distance location
LOC110523134 zbtb43 coding downstream 77884 7187898 ~ 7194434 (-)
LOC110523130 ralgps1 coding downstream 108846 6867878 ~ 7163472 (-)
LOC118964555 NA coding downstream 396394 6875316 ~ 6875924 (-)
LOC110524942 LOC106572043 coding downstream 412145 6775405 ~ 6860173 (-)
LOC110523129 NA coding downstream 508685 6755753 ~ 6763633 (-)
mvb12ba mvb12b coding upstream 27016 7394813 ~ 7436919 (-)
LOC110523137 pbx3 coding upstream 225565 7593362 ~ 7722127 (-)
LOC110524943 fbn2 coding upstream 514592 7882389 ~ 8204518 (-)
LOC110523142 LOC106571805 coding upstream 838694 8206491 ~ 8229291 (-)
hint1 hint1 coding upstream 1393034 8760831 ~ 8765948 (-)
G363833 NA non-coding downstream 54 7270778 ~ 7272264 (-)
G363789 NA non-coding downstream 81067 7190968 ~ 7191251 (-)
G363788 NA non-coding downstream 81808 7190189 ~ 7190510 (-)
G363759 NA non-coding downstream 85563 7186119 ~ 7186755 (-)
G363760 NA non-coding downstream 89980 7181700 ~ 7182338 (-)
G363834 NA non-coding upstream 20957 7388754 ~ 7393766 (-)
G363907 NA non-coding upstream 29942 7397739 ~ 7398688 (-)
G363944 NA non-coding upstream 130384 7498181 ~ 7498712 (-)
G363996 NA non-coding upstream 219834 7587631 ~ 7587995 (-)
G364007 NA non-coding upstream 257759 7625556 ~ 7627041 (-)
LOC110524941 LOC106572051 other downstream 546338 6562531 ~ 6726634 (-)
G363470 LOC106572095 other downstream 717603 6543675 ~ 6554715 (-)
LOC110523123 LOC106572171 other downstream 1318067 5945164 ~ 5954687 (-)
G361170 NA other downstream 2190450 5080578 ~ 5081868 (-)
G360703 NA other downstream 2532616 4738312 ~ 4739702 (-)
G364322 NA other upstream 935470 8303267 ~ 8304183 (-)
G364754 NA other upstream 1679745 9047542 ~ 9099000 (-)
G365752 NA other upstream 1821872 9189669 ~ 9190098 (-)
G368612 ctxn3 other upstream 4766255 12134052 ~ 12136790 (-)
G368921 NA other upstream 5337769 12705566 ~ 12706092 (-)

Expression

LOC110523135(lmx1b) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
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LOC110523135(lmx1b) Expression in each Bioproject

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LOC110523135(lmx1b) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 25.
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Co-expression Network