mvb12ba (mvb12b)


Basic Information

Item Value
gene id mvb12ba
gene name mvb12b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 7394813 ~ 7436919 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601550.2
gagagaggagggaagctAAATGAAGAACTGGTTCTTGAGGAAGTGACCCATGATTTCACATACCTGCTTTGAGCTAAATGAGGAACTGGTTCTTGAGGAAGTGACCCATGATTTCACATACCTGCTTTGAGCTAAATGAGGAACTGGTTCTTGAGGAAGTGACTCATGATTTCACGTAACTGTTGTGGGAGCATAACATTTGGGTAGTTTCCGTTTACTACATTTGCCCAAGCAGTTGACTTAACACTTAAATTGATGTTTGTTTGAGTTTCTCTTCAGAAAAAGGGGGCAAGGAAGCCAATTGTTGTAAAGTCCTACTGTATTAGGGTATGTAGGCtgtttttgttttcttcatgTGAGGACCAAAGCTAGCCTAATGCAAGCTGACTACTTAACTCACTACCTATTCTAACTGTCCTTGCTCTCAAACTAATCTAGGCCTGTTAATGACACATTCcaggctctctgtgtgtgtgtgtgtcaagtgtgTTCACTTGCTGTTCAGCTCCTGTTACTGTAAGCAGAGATACAGCGCCTGGATGGTCTCTGCAATCTTGGCAGTCGtgttcctccctgtctccttAGCAATGTCTTTTTTCACAAGAGGAATTCAGATAGGACTCTGCTCGGTATGGACCTGCTTCGCCCCATTAGCAGCCACACATAACTCTCCCATGATGCCTGAGGTTCGGGAGCTTTCAGACGCACTGCCGGAGTTGCCCATGGACCCCATCACTGGTGTGGGGGTGGTGGCCTCGCGAAACAGAGCGCCTACTGGCTATGATGTGGTCTCCCAAACAACAGATGGTCTTGACGCTGACTTGTGGAAAGACGGCCTGTTCAAATCCAAGGTGACACGCTACCTCTGTTTCACCAGGGTCTTCTCTAAAGAAAACAGTCATTTAGGTAATGTGCTGGTGGACATGAAGCTTATCGACATCAAGGACACTCTGCCTGTGGGTTTTATTCCCATCCAGGAGACTGTGGACACACAGGAGCAAGCCTTCCGGAAGAGGAGGCTGTGTATCAAGTTCATCCCGCGGGACTCCACAGAGGCAGCCATCTGTGACATCAGAATCCTGGGCAGGTCCAAGCAGGCCCCACCGCAGTACACTTTCATAGGAGAGCTCAACAACATGGGGATCTGGTATCGCATGGGTAAGGTCCCGCGTGCCCAGGAATCTTCGCCAACTCCAACCACCAATAACATCCAGAATATCAACTCGACGGCCAACACCACACCAACCCCAGCAGCCCCTCTGCCCAAACATATATCCATGACACTCCCCGCCAGTTTCAAAAGGCAAACCACTACTAGACCAGATTTTGAACACCAGAACTCCAACCTGTACGCCATATCAGCAATGGATGGAGTGCCTTTCATGATCTCTGAGAAGTTTGCCTGCGCTTCCGATGATCTGCAGCAGGTGGATCTGATGGGCATCACAATCAAGTCGCTGACGGAGATTGAGAAAGAGTACGAGTATAGTTTCCGCACAGAGCACAGCGCAGCAGCGAGGCTTCCCCCCAGTCCCACACGGATCTCCCTGGGCTCTGAGGCCTGAGCCCCCCCCAGTCCCACACAGATCTGagcctcccccctcctcccctccagagAGACCTGagcctctccctccttctccctcttcccctccagaGAGACCTgagcctctccctcctcccctccagagAGACCTgagcctctccctcctcccctacaGAGACCTGAGCCTCTCCCACCTTTTCCCTCCTCCCCTACAGAGATCTGagcctctccctccttccctacagaGAGGTCTGagactctccctcctcccctacaGAGAGGTCGGagcctcccccagtcctccagcaggagaggaggagagactcacactactactactactactgagaa
>XM_021601551.2
TCGATTAGTTAGCTTGcaaactagctagttagcttagcTGCTTAAGTAGTTAGCATCTGCTTCTCTCTGCGGTGGCCTCGAACGAGACCGCGGCTTGTAGCACTACTGCTAGCCCCCCCTGCTGCTTCTGTGGTCATGAAAAGATGCTTTTGTCTGAAAAGGAGGGACACTGTGCCGCGAGTAACAAACTCTCCCATGATGCCTGAGGTTCGGGAGCTTTCAGACGCACTGCCGGAGTTGCCCATGGACCCCATCACTGGTGTGGGGGTGGTGGCCTCGCGAAACAGAGCGCCTACTGGCTATGATGTGGTCTCCCAAACAACAGATGGTCTTGACGCTGACTTGTGGAAAGACGGCCTGTTCAAATCCAAGGTGACACGCTACCTCTGTTTCACCAGGGTCTTCTCTAAAGAAAACAGTCATTTAGGTAATGTGCTGGTGGACATGAAGCTTATCGACATCAAGGACACTCTGCCTGTGGGTTTTATTCCCATCCAGGAGACTGTGGACACACAGGAGCAAGCCTTCCGGAAGAGGAGGCTGTGTATCAAGTTCATCCCGCGGGACTCCACAGAGGCAGCCATCTGTGACATCAGAATCCTGGGCAGGTCCAAGCAGGCCCCACCGCAGTACACTTTCATAGGAGAGCTCAACAACATGGGGATCTGGTATCGCATGGGTAAGGTCCCGCGTGCCCAGGAATCTTCGCCAACTCCAACCACCAATAACATCCAGAATATCAACTCGACGGCCAACACCACACCAACCCCAGCAGCCCCTCTGCCCAAACATATATCCATGACACTCCCCGCCAGTTTCAAAAGGCAAACCACTACTAGACCAGATTTTGAACACCAGAACTCCAACCTGTACGCCATATCAGCAATGGATGGAGTGCCTTTCATGATCTCTGAGAAGTTTGCCTGCGCTTCCGATGATCTGCAGCAGGTGGATCTGATGGGCATCACAATCAAGTCGCTGACGGAGATTGAGAAAGAGTACGAGTATAGTTTCCGCACAGAGCACAGCGCAGCAGCGAGGCTTCCCCCCAGTCCCACACGGATCTCCCTGGGCTCTGAGGCCTGAGCCCCCCCCAGTCCCACACAGATCTGagcctcccccctcctcccctccagagAGACCTGagcctctccctccttctccctcttcccctccagaGAGACCTgagcctctccctcctcccctccagagAGACCTgagcctctccctcctcccctacaGAGACCTGAGCCTCTCCCACCTTTTCCCTCCTCCCCTACAGAGATCTGagcctctccctccttccctacagaGAGGTCTGagactctccctcctcccctacaGAGAGGTCGGagcctcccccagtcctccagcaggagaggaggagagactcacactactactactactactgagaa
>XM_021601552.2
TGGTACACTCCCTCATTCTCTCACTGCAATGTCCACAAATGGCAGCTATTAGAATCCGCTAGCTACAATCTCAGTCACCTAAATGCTCAGTAAATCAACTCGTTGGGGGGGGGGATTAGCTAACATCCCACAAAGGATGCATTTCTTGCGGCTGTAATTCCCgaaaaagggggagaagaggaaaagAAGATAGAAAGTCTAAACCaagattgttaaaaaaaaaaaaaaatctgaattgttGGTCCTCACTGGAACTCTCCCATGATGCCTGAGGTTCGGGAGCTTTCAGACGCACTGCCGGAGTTGCCCATGGACCCCATCACTGGTGTGGGGGTGGTGGCCTCGCGAAACAGAGCGCCTACTGGCTATGATGTGGTCTCCCAAACAACAGATGGTCTTGACGCTGACTTGTGGAAAGACGGCCTGTTCAAATCCAAGGTGACACGCTACCTCTGTTTCACCAGGGTCTTCTCTAAAGAAAACAGTCATTTAGGTAATGTGCTGGTGGACATGAAGCTTATCGACATCAAGGACACTCTGCCTGTGGGTTTTATTCCCATCCAGGAGACTGTGGACACACAGGAGCAAGCCTTCCGGAAGAGGAGGCTGTGTATCAAGTTCATCCCGCGGGACTCCACAGAGGCAGCCATCTGTGACATCAGAATCCTGGGCAGGTCCAAGCAGGCCCCACCGCAGTACACTTTCATAGGAGAGCTCAACAACATGGGGATCTGGTATCGCATGGGTAAGGTCCCGCGTGCCCAGGAATCTTCGCCAACTCCAACCACCAATAACATCCAGAATATCAACTCGACGGCCAACACCACACCAACCCCAGCAGCCCCTCTGCCCAAACATATATCCATGACACTCCCCGCCAGTTTCAAAAGGCAAACCACTACTAGACCAGATTTTGAACACCAGAACTCCAACCTGTACGCCATATCAGCAATGGATGGAGTGCCTTTCATGATCTCTGAGAAGTTTGCCTGCGCTTCCGATGATCTGCAGCAGGTGGATCTGATGGGCATCACAATCAAGTCGCTGACGGAGATTGAGAAAGAGTACGAGTATAGTTTCCGCACAGAGCACAGCGCAGCAGCGAGGCTTCCCCCCAGTCCCACACGGATCTCCCTGGGCTCTGAGGCCTGAGCCCCCCCCAGTCCCACACAGATCTGagcctcccccctcctcccctccagagAGACCTGagcctctccctccttctccctcttcccctccagaGAGACCTgagcctctccctcctcccctccagagAGACCTgagcctctccctcctcccctacaGAGACCTGAGCCTCTCCCACCTTTTCCCTCCTCCCCTACAGAGATCTGagcctctccctccttccctacagaGAGGTCTGagactctccctcctcccctacaGAGAGGTCGGagcctcccccagtcctccagcaggagaggaggagagactcacactactactactactactgagaa

Function

symbol description
mvb12b Enables lipid binding activity. Involved in regulation of epidermal growth factor receptor signaling pathway; viral budding; and virus maturation. Located in several cellular components, including cytosol; endosome; and nucleus. Part of ESCRT I complex.

NR:

description
multivesicular body subunit 12B isoform X1

GO: NA

KEGG:

id description
K12186 FAM125; ESCRT-I complex subunit MVB12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601550.2 False 1897 mRNA 0.52 10 7394813 7434831
XM_021601551.2 False 1418 mRNA 0.55 10 7394813 7436659
XM_021601552.2 True 1484 mRNA 0.53 10 7394813 7436919

Neighbor

gene id symbol gene type direction distance location
LOC110523135 lmx1b coding downstream 27016 7272318 ~ 7367797 (-)
LOC110523134 zbtb43 coding downstream 200379 7187898 ~ 7194434 (-)
LOC110523130 ralgps1 coding downstream 231341 6867878 ~ 7163472 (-)
LOC118964555 NA coding downstream 518889 6875316 ~ 6875924 (-)
LOC110524942 LOC106572043 coding downstream 534640 6775405 ~ 6860173 (-)
LOC110523137 pbx3 coding upstream 156443 7593362 ~ 7722127 (-)
LOC110524943 fbn2 coding upstream 445470 7882389 ~ 8204518 (-)
LOC110523142 LOC106571805 coding upstream 769572 8206491 ~ 8229291 (-)
hint1 hint1 coding upstream 1323912 8760831 ~ 8765948 (-)
LOC110524946 LOC106571878 coding upstream 1420698 8857617 ~ 8864575 (-)
G363834 NA non-coding downstream 1047 7388754 ~ 7393766 (-)
G363857 NA non-coding downstream 66301 7325405 ~ 7328512 (-)
G363833 NA non-coding downstream 122549 7270778 ~ 7272264 (-)
G363789 NA non-coding downstream 203562 7190968 ~ 7191251 (-)
G363788 NA non-coding downstream 204303 7190189 ~ 7190510 (-)
G363944 NA non-coding upstream 61262 7498181 ~ 7498712 (-)
G363996 NA non-coding upstream 150712 7587631 ~ 7587995 (-)
G364007 NA non-coding upstream 188637 7625556 ~ 7627041 (-)
G364037 NA non-coding upstream 249440 7686359 ~ 7687049 (-)
G364044 NA non-coding upstream 260163 7697082 ~ 7738092 (-)
LOC110524941 LOC106572051 other downstream 668833 6562531 ~ 6726634 (-)
G363470 LOC106572095 other downstream 840098 6543675 ~ 6554715 (-)
LOC110523123 LOC106572171 other downstream 1440562 5945164 ~ 5954687 (-)
G361170 NA other downstream 2312945 5080578 ~ 5081868 (-)
G360703 NA other downstream 2655111 4738312 ~ 4739702 (-)
G364322 NA other upstream 866348 8303267 ~ 8304183 (-)
G364754 NA other upstream 1610623 9047542 ~ 9099000 (-)
G365752 NA other upstream 1752750 9189669 ~ 9190098 (-)
G368612 ctxn3 other upstream 4697133 12134052 ~ 12136790 (-)
G368921 NA other upstream 5268647 12705566 ~ 12706092 (-)

Expression


Co-expression Network