chsy3 (chsy3)


Basic Information

Item Value
gene id chsy3
gene name chsy3
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 8517256 ~ 8701336 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976699.1
TTGAAGAGGAACagatcgctctctgtctcgctccgccctctgtctgcctgcccaACAGGAAGACACTCTCCGGTTACTTCTTTCACCAATGAATATGCATTGGCTACTACTGATTGCCTGTGCCTGAAACGCAAAGAAATTAGAGAAGAGGGACGGAGGATATGAAAAGTTATTTACCCTGACGTCAATCTGTAAACAAAATGGCGAGTCAGGGGCGGATAAACTAGCTTTAGGTAGCATATACTTAGCGACAGTGTGCACAAATAAAACTGTATTCGTCACGTTTCAAGACTGAGGAGACCGTTCATATTTGACAGCGGTAACAAATCAACTTGAGTTGCCTGAAATTAGTGGAGTTaactttttgggggggaaatgaTTGCGCATGTAGAAACAATGTAGCCTATCCACTGGAAAGTAATGAAGAGTTGTGGTTACAACGTTGCTTTTCATTCGGACTGAACAGCAACTTCTGCCGTCGCCCTGGACATTACAAAAGAAGAAGCTTTTGCCAGCGACCTACTGTAGCTACTCAGTGGATATTTCCCCAGAACTGTAACATGACAGTCTACCGATACTAATAGATTATCTAGGGATAAATGGCTTGTTGGATACATTTTAAGGACGTTATCCCTGGAGGTGGGGATACACTCTTACCTTCAGGTACCACTACTCATCTAATGCCCTTCGCAGATGAGTGATAACCATTTATGGAAACTGCTCGGTGTAAAACAGATATATCAAGTGAGCACTACTCGGAGGATATATTTAGTTTATATCATATTTAATAAACTCTCAATTTTTATTTCAATCATGGCCGTTAGGTCTAGAAGACCGTGGATGGGCGTAATTGTAGGGGTCTTTCTTGGATTTACAGCGGCGTCTTGGCTAATTGTCCCCAGGGTAGTGGAAATCAGTGGGAAAAGAAAGAAGTCGTCGATCTGCTCATACTACAGTAATGCTGCGGGCATCGGTAAAGTGGCCGAAATCATTGGAAGCACCGCAAGTAATGCGTTACGCAAAGACCCGGAGAATAACCTGTCCAGCCAAGAGGGcagtgaagaggaggaagagagcgtTTACAAGACTGGTAACGGTAGTGGGGATGGCGGAGGACCTATTTCCAAACCTAGGCATTTTCTCTATGTCGGCGTCATGACAGCCAAAAAGTACCTTGATTCCCGCGCTGTGGCTGCACACAGGACGTGGACCGGTTCCATCCCCGGGAAGGTTGACTTCTTCTCCAGCGAGGGCTCTGAAACAGTCCCACTGCCCATTCCTGTTCCCGTGGTGTCGTTGACAGGTGTAGATGATTCATACCCGCCACAGAAGAAGTCATTTATGATGTTGAAGTACATGCATGACCATTACCTGGATAAATACGAGTGGTTCATGAGGGCAGATGATGATGTCTACATTCGAGgCGAAAAGCTTGAGTCATTCCTGCGCTCTCTGAATAGCAGCCAGCCCCTGTACCTTGGTCAGACGGGCCTGGGCACAGCCGAGGAGCTTGGAAAGCTGGCCCTGGAGCCCGGGGAGAACTTCTGCATGGGGGGCCCGGGCATGATCTTCAGCAGAGAGGTGCTGAGGAGGATGGTGCCTCACATCGGGACCTGTCTCAGGGAGATGTACACCACCCACGAGGATGTGGAGGTGGGTCGCTGCGTGCGCCGCTTCGGGGGTACCCAGTGCGTCTGGTCCTACGAGATGCAGCAGCTCTTCTACGAGAATTACGAGCACAACAAGAAGGGCTTCATCCAGGAGCTCCACAGCAGCAAGATCCACAACGCCATCACACTCCATCCCAACAAGAGGCCTGCCTACCAGTACCGGCTACACGGTTACATGTTGAGCCGCGACATCTCCCGGCTACGCTACCGCACCATCCTCCTGCACCGCGAGGGCCTGGCCATGAGCCGGCTCAGCAATACAGAGGTGCAGTGGGAGGATCAACAGCTGGGGGCGCCACCTTCCTACACGCGCTACCAGCCCGCTGAAAGAGGGGACGTCATCGAGTGGGACTTCCTCACTGGCCGACATCTGTACTCAACGGGGGAGAACCAGATGCCCCGGCAGGGCCTCGGGAGCCTGCTTCGGGCTGCCCTGGAAGACACGGTGCTTCAGGTCATGGAGATGATCAATGAGAACTCCAAAGCCCGCGGGCGTGTTATCGACTTCAAGGAGATCAAGTATGGCTACCGCAGGGTGGACCCCATGCACGGGGCTGAGTACATTCTGGACCTACTACTTCTGTACAAGAAACACAAAGGGCGCAAAGTGACAGTGCCTGTTAGGAGGCATGCGTACCTGCAGCAGTCCTTCAGTAGGCCCTTCTTCAGTGAGTCTGAGGAATTGGATGTTGTTGAGCTGGTGGAGGCCATCAACACTGAGTCGCAGTCGTTCTCTTTCCTCTCCAACTCCCTCAAGATATTCTCGCCTTTCCAGTTCTCCGAGTCGACCAGGGAGATGCGCGAACGCAGCCAGAGAAAGGTCAACATCCTGGTCCCGCTGACAGGCAGGTATGACATCTTTCTCCGCTTCATGGAGAACTTTGAGAAGATCTGCCTGATCCCCAAACAGAACGTCAAGCTGGCCATTATTTTGGTGGACAACGACAGCAACCAGGACAGGGAGAAGCACTTGGACTTGATCAAGGAGTACAGCAACAAGTATCCCAAAGCAGACCTGTCTGTCATCCCCATGACGGGTGACTTCTCCCGGGGGCTGGCTCTGGAGCTGGGCTCCTCGCAACTTGACAATGACACACTGCTGTTCTTCTGTGACGTGGACCTAGTCTTTAACGGGGACGCCCTGCAGCGGTGCAGGCACAACACCATCCAAAGTAGACAGGCTTACTATCCCGTTGTCTTTAGTCAGTACGATCCTAAAATTGTCTACGCCGGCAACACCCCTGACGACAGCAGCTTTGTGTTCACCAAGAAAAGTGGCTTCTGGAGGGATTACGGCTTTGGAATCACCTGCATATTTAAAAGTGACTTGCAAAAAGCTGGCGGTTTTGATACGTCGATCCAAGGCTGGGGGTTGGAAGATGTAGACCTGTTCACAAAAGTGATTAACTCCGGTTTAAAAGTGTTCCGCAGCCAGGAACCAGGAATCGTCCACATTTATCACCCTGTTCAGTGCGACACTAGCCTTGAGCCCAAGCAGTACAAAATGTGCCTAGGGTCTAAGGCAAGTACTTATGCATCTTCGATGCAGTTAGCCGAGCTGTGGCTGGAGAAACACTTGGGGGTAGGCTACAACAGAACTTCCACCTGACATTCCTGTTCTCCGTGGCTCCTCAATGGAGGTTACCTCAGTTCTGCATGAGTGCAGACAGCAATGGACTGTGCGTGCTTCtatgtgagagagaaaaagagaccaaactgcagagagaaagagagagagagagttcaaggGTACGCTCAATTATCTTTGGTGCAATTTGTTGTGTTCCTCTGGTGATTTGTTTCATCAATTCTCTACAGCGTCTTCCAAAGGACATTGTAATGCCTTTACTCACGGCTTGTTGGGAACTCTGATGTGGTTTGTTTCGTTCCTATTTCCGTTGTTATCATGCGATTCACATGTATGCCTCAGGACCACATCTTTTCATCACCTGGCCATCTCCAATGAATGTGTTCTTAGCAGCCTTCCGTTGGATTAGTTGCACAGAGCGCCCCACGCCTACTGTGAAAAGGACACTGACAACATCACCAGAGAACAAAAAACAGTAATAGTGTTGATAATAATACTGAAACAATGACAATAATGTTaataataaatgtactgaaaGTACCACACATGTGCTTTAAAGCTCCCAGATGGGAAACAGACTGTAAACTAGAGTTTTCTAATTCATACAAAGAACCGAAAGTACTTCATCCGCGGTATTTTTTAAAGAAGCGTGTGAATAATTTTGATGATTGTATCTTTATTTTCTAGTCAAAATATTTACATGGATTTCAGGTACTGGATACCGTCCAACATTTGCTGTGTTCTTAATCTCATTGCAAAGGCCCAcattctgtcattctgtctgATATGTGACCATGCTTCAATGAACAAAATGGCATCTTGTCGCCATTAGCTTTGTGGCTTAGAAGTCGTTCAGTTTGCTGGCAAGAACAACTAAGGTATATTAAAATGGGTTATTTATAATAAAACAAATGTTGAAATGCA
>TU412594
GCAAAAAGCTGGCGGTTTTGATACGTCGATCCAAGGCTGGGGGTTGGAAGATGTAGACCTGTTCACAAAAGTGATTAACTCCGGTTTAAAAGTGTTCCGCAGCCAGGAACCAGGAATCGTCCACATTTATCACCCTGTTCAGTGCGACACTAGCCTTGAGCCCAAGCAGTACAAAATGTGCCTAGGGTCTAAGGCAAGTACTTATGCATCTTCGATGCAGTTAGCCGAGCTGTGGCTGGAGAAACACTTGGGGGTAGGCTACAACAGAACTTCCACCTGACATTCCTGTTCTCCGTGGCTCCTCAATGGAGGTTACCTCAGTTCTGCATGAGTGCAGACAGCAATGGACTGTGCGTGCTTCtatgtgagagagaaaaagagaccaaactgcagagagaaagagagagagagagttcaaggGTACGCTCAATTATCTTTGGTGCAATTTGTTGTGTTCCTCTGGTGATTTGTTTCATCAATTCTCTACAGCGTCTTCCAAAGGACATTGTAATGCCTTTACTCACGGCTTGTTGGGAACTCTGATGTGGTTTGTTTCGTTCCTATTTCCGTTGTTATCATGCGATTCACATGTATGCCTCAGGACCACATCTTTTCATCACCTGGCCATCTCCAATGAATGTGTTCTTAGCAGCCTTCCGTTGGATTAGTTGCACAGAGCGCCCCACGCCTACTGTGAAAAGGACACTGACAACATCACCAGAGAACAAAAAACAGTAATAGTGTTGATAATAATACTGAAACAATGACAATAATGTTaataataaatgtactgaaaGTACCACACATGTGCTTTAAAGCTCCCAGATGGGAAACAGACTGTAAACTAGAGTTTTCTAATTCATACAAAGAACCGAAAGTACTTCATCCGCGGTATTTTTTAAAGAAGCGTGTGAATAATTTTGATGATTGTATCTTTATTTTCTAGTCAAAATATTTACATGGATTTCAGGTACTGGATACCGTCCAACATTTGCTGTGTTCTTAATCTCATTGCAAAGGCCCAcattctgtcattctgtctgATATGTGACCATGCTTCAATGAACAAAATGGCATCTTGTCGCCATTAGCTTTGTGGCTTAGAAGTCGTTCAGTTTGCTGGCAAGAACAACTAAGGTATA

Function

symbol description
chsy3 Predicted to enable glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity. Predicted to be involved in chondroitin sulfate biosynthetic process. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cranial cartilage; inner ear; lateral mesoderm; notochord; and tail bud. Orthologous to human CHSY3 (chondroitin sulfate synthase 3).

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976699.1 False 4182 mRNA 0.49 3 8517256 8701336
TU412594 True 1142 lncRNA 0.43 1 8700154 8701295

Neighbor

gene id symbol gene type direction distance location
minar2 kiaa1024l coding upstream 1621 8510633 ~ 8515635 (+)
LOC110524944 adamts19 coding upstream 9626 8383645 ~ 8507630 (+)
isoc1 isoc1 coding upstream 210241 8290855 ~ 8307147 (+)
slc27a6 slc27a6 coding upstream 227999 8250159 ~ 8289257 (+)
mapkap1 mapkap1 coding upstream 648691 7742247 ~ 7868565 (+)
LOC118964742 NA coding downstream 6403 8707739 ~ 8712041 (+)
lyrm7 lyrm7 coding downstream 68448 8769784 ~ 8772389 (+)
cdc42se2 cdc42se2 coding downstream 73798 8775134 ~ 8849107 (+)
sptlc1 sptlc1 coding downstream 179718 8881054 ~ 8900229 (+)
ror2 ror2 coding downstream 199416 8900752 ~ 9028540 (+)
G362898 NA non-coding upstream 81936 8435072 ~ 8435320 (+)
G362893 NA non-coding upstream 85828 8430249 ~ 8431428 (+)
G362879 NA non-coding upstream 101952 8414822 ~ 8415304 (+)
G362877 NA non-coding upstream 106198 8410835 ~ 8411058 (+)
G362859 NA non-coding upstream 146338 8370630 ~ 8370918 (+)
G363016 NA non-coding downstream 1614 8702950 ~ 8703176 (+)
G363019 NA non-coding downstream 3272 8704608 ~ 8711371 (+)
G363027 NA non-coding downstream 23607 8724943 ~ 8725173 (+)
G363042 NA non-coding downstream 44825 8746161 ~ 8746385 (+)
G363054 hint1 non-coding downstream 59495 8760831 ~ 8765642 (+)
G362662 NA other upstream 597691 7918922 ~ 7919565 (+)
G362554 NA other upstream 824742 7690440 ~ 7692514 (+)
G362297 zbtb43 other upstream 1327437 7185926 ~ 7189819 (+)
G361671 NA other upstream 2589330 5803828 ~ 5927926 (+)
G360985 NA other upstream 3217853 5296870 ~ 5299403 (+)
G364850 NA other downstream 527502 9228838 ~ 9229231 (+)
G365197 NA other downstream 1147367 9848703 ~ 9849154 (+)
G366748 NA other downstream 2275346 10976682 ~ 10977152 (+)
G366973 NA other downstream 2724306 11425642 ~ 11428710 (+)
G363008 NA non-coding upstream 15773 8684175 ~ 8684381 (+)
G363006 NA non-coding upstream 17456 8682461 ~ 8682698 (+)
G363005 NA non-coding upstream 17848 8682003 ~ 8682306 (+)
G363004 NA non-coding upstream 20577 8679285 ~ 8679577 (+)
G362999 NA non-coding upstream 27222 8672694 ~ 8672932 (+)

Expression


Co-expression Network