sptlc1 (sptlc1)


Basic Information

Item Value
gene id sptlc1
gene name sptlc1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 8881054 ~ 8900229 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976704.1
CTGTCGCTAACAGGTCACGTCACTTGTAATCTGCTCTCTGATTGGGCGATACAGGCCGCGCCATTGTATGGGATGAGCAGTTTGTTTGCCCCCTAATTCTGGCACCTGCCTACCATCTGGTCCTGGAGGGGATCCTCATATTGTGGATCATCAGACTGCTGTTTTCAAAGACGTACAAACTACAGGAGCGTTCAGACCTCACAGAGAAGgaaaaggaggacttaATTGAAGAATGGCAACCAGAACCCCTTGTCCCTCCTATGTCCAAAGACCATCCTTCCCTCAATTATGACATCGTCACTGGCCCACCAAGCCACAAAATCATTGTAAATGGAAAAGAGTGCATTAACTTTGCTTCATTTAACTTCTTGGGTTTCCTTGACAACGAGCGAGTGAAGCAAAAGGCCTTGACTTCTCTCAGGAGGTATGGTGTTGGTACCTGTGGTCCAAGAGGTTTCTATGGGACCTTTGATGTCCACTTGGAGTTAGAGGATCGTTTGGCCAAGTTCATGAAAACAGAGGAGGCCATCATCTATTCCTATGGCTTTGCAACGATAGCTAGTGCTATACCGGCCTACTCCAAGAGAGGAGACATAGTGTTTGTGGATGAGGCGGCATGTTTCTCCATACAAAAGGGTCTCCAAGCCTCCCGCAGTTTCATCAAGTACTTCAAACACAACGACATGGAAGATCTGGAGAGACTGCTCAAAGAGCAGGAGATCGAGGATCAGAGGAATCCTCGGAAGGCCAGAGTGACCAGGAGGTTCATCATAGTGGAGGGGCTGTATATAAACACTGCAGATGTTTGTCCCCTTCCAGACCTGGTGAAGCTGAAGTACAAGTACAAGGTCCGCATCTTCCTGGAGGAGAGTATGTCGTTCGGGGTGCTGGGAGAACATGGCAGAGGGGTTACGGAACACTTTGGGGTCAACATTGACGATATTGACCTCATTAGTGCCAACATGGAGAACGCTGTGGCTTCCATCGGTGGCTTCTGCTGTGGGAGGTCGTTCGTCATAGACCATCAGCGTCTGTCAGGCCAGGGGTACTGTTTCTCTGCCTCCCTGCCCCCCATGCTGGCTGCTGCAGCCATAGAGGCCCTTAACATCATGGAGGAAGACCCAGAAATTTTTGCCATCCTGAGGGAGAAGTGCAAACACGTCCACAAAGCGTTGCAAGAGAGTCCTGGGGTGAAGGTAATAGGAGAAGCTTATGCCCCTGCCCTACACCTACAGCTAGAGAGAAGCTCTGGATCCAGAGACACTGACGTGAAGATGCTTCGCAGCATTGTAGATTACTGTTTGGAGAGACAGATCGCACTCACCCTAGCTCGGTACTTGGATAAAGAGGAGCGGTTTCTCCCTCCGCCTTCGATCCGGGTAGTGGTCACCATCGAGCAGACTGAAGAGGACATTGAGAAAGCTGCATCCTGTATCAGAGAGGCAGCTCTGGCTATCCTCAAATGATTCCTGACCAACCAGACCTGTAGTTCTCCGTTCTCAGTTTGCCGACATTCCCAGGATTCACCTCCAGGCTTCGCAGAGCATCAATCGACAGCGACATTGGAAAGGTCCATCAAGGCATAGCCGGGTGCGTTCATCCACAAACTCGAGGAGGAGAAGACTCAAGGTGGACAACACTTTCTGTGAGGAGCGTTgtcgatttttttttttaaaaatcagatTATCCTTCTCACAGCTACTTATTTATGTTTGACCTCCCATTTTGCTGACGGTCCTCGTTCACCTTCTCACATATACATGAATGTAAAATCTGGGCCTCGTCCCCCAACCGTCATTCAGGTCTGTTTGAATGAAGGTTGAAAGTCTTAACTAATAAACCCATAAATATTTGTAACCAAAGAGCTGATTCATTTTGTAAGTGAAGTTACTTTAAAATGATtttatatacatactgtattatgaaaccgtttctttgtttttgtttgttttatatACTGACACAAACCAAATTGTGTATTTTCTGTCTTTTGCCTAAATGTTAGATTGTATTCCCAAGAGTTTCACATTATCGCACTGCGTTGTATGAAATGCACCTATTTTAGTTTTGTTGTCTTGTATACTAATTCATATTTGATTCCAAGCGGTCACTGATTTTAAGACTTGCAAGATTGTTTCTCTTTCTCATCTTACCAATCGCCTCACTTGGCATCATGGTTAGGTCAGCCTGCATTGGCACCCTGGCGGTATTTATCATTGGGGATTTATTTTTATGTTAGGTTCGTTTTAACGTATTATAACGTTCTGTTACTGATCATTAAGTAACTTGCCTCCAGTTTTTTTTAACGTGTTTTAAATGATTTGAAGTTTGATTTGAAAAGTTAATTCAATTTCTTCATTAGATCACATGAATGATTTGCATACAAATTTCACCTAATGTAATTTGAGAGTTTTAACACATGCCAACTtgaatataaatacatttgcactgTGATGCACATCAATCTCGTTTTCATGTTGAAGCCTATTGTTGAGTGACATAATGACACTCCTGCAAGACACACTAGTGTCACTTTTTTGTAACAAAGACATACTCACTGGTTCATTTATACAACATCCAATATGCAGTATATTATGTGCCTTTGTGTTGCTAAATGTGCGATCAATTTGATTGACTA
>XM_036976703.1
ACAGGTCACGTCACTTGTAATCTGCTCTCTGATTGGGCGATACAGGCCGCGCCATTGTATGGGATGAGCAGTTTGTTTGCCCCCTAATTCTGGTAACCAAGATGGCGTCGGGGCAGCAGTGGGTGTTAGTGGAGATGGTACAAGCACTATACGAGGCACCTGCCTACCATCTGGTCCTGGAGGGGATCCTCATATTGTGGATCATCAGACTGCTGTTTTCAAAGACGTACAAACTACAGGAGCGTTCAGACCTCACAGAGAAGgaaaaggaggacttaATTGAAGAATGGCAACCAGAACCCCTTGTCCCTCCTATGTCCAAAGACCATCCTTCCCTCAATTATGACATCGTCACTGGCCCACCAAGCCACAAAATCATTGTAAATGGAAAAGAGTGCATTAACTTTGCTTCATTTAACTTCTTGGGTTTCCTTGACAACGAGCGAGTGAAGCAAAAGGCCTTGACTTCTCTCAGGAGGTATGGTGTTGGTACCTGTGGTCCAAGAGGTTTCTATGGGACCTTTGATGTCCACTTGGAGTTAGAGGATCGTTTGGCCAAGTTCATGAAAACAGAGGAGGCCATCATCTATTCCTATGGCTTTGCAACGATAGCTAGTGCTATACCGGCCTACTCCAAGAGAGGAGACATAGTGTTTGTGGATGAGGCGGCATGTTTCTCCATACAAAAGGGTCTCCAAGCCTCCCGCAGTTTCATCAAGTACTTCAAACACAACGACATGGAAGATCTGGAGAGACTGCTCAAAGAGCAGGAGATCGAGGATCAGAGGAATCCTCGGAAGGCCAGAGTGACCAGGAGGTTCATCATAGTGGAGGGGCTGTATATAAACACTGCAGATGTTTGTCCCCTTCCAGACCTGGTGAAGCTGAAGTACAAGTACAAGGTCCGCATCTTCCTGGAGGAGAGTATGTCGTTCGGGGTGCTGGGAGAACATGGCAGAGGGGTTACGGAACACTTTGGGGTCAACATTGACGATATTGACCTCATTAGTGCCAACATGGAGAACGCTGTGGCTTCCATCGGTGGCTTCTGCTGTGGGAGGTCGTTCGTCATAGACCATCAGCGTCTGTCAGGCCAGGGGTACTGTTTCTCTGCCTCCCTGCCCCCCATGCTGGCTGCTGCAGCCATAGAGGCCCTTAACATCATGGAGGAAGACCCAGAAATTTTTGCCATCCTGAGGGAGAAGTGCAAACACGTCCACAAAGCGTTGCAAGAGAGTCCTGGGGTGAAGGTAATAGGAGAAGCTTATGCCCCTGCCCTACACCTACAGCTAGAGAGAAGCTCTGGATCCAGAGACACTGACGTGAAGATGCTTCGCAGCATTGTAGATTACTGTTTGGAGAGACAGATCGCACTCACCCTAGCTCGGTACTTGGATAAAGAGGAGCGGTTTCTCCCTCCGCCTTCGATCCGGGTAGTGGTCACCATCGAGCAGACTGAAGAGGACATTGAGAAAGCTGCATCCTGTATCAGAGAGGCAGCTCTGGCTATCCTCAAATGATTCCTGACCAACCAGACCTGTAGTTCTCCGTTCTCAGTTTGCCGACATTCCCAGGATTCACCTCCAGGCTTCGCAGAGCATCAATCGACAGCGACATTGGAAAGGTCCATCAAGGCATAGCCGGGTGCGTTCATCCACAAACTCGAGGAGGAGAAGACTCAAGGTGGACAACACTTTCTGTGAGGAGCGTTgtcgatttttttttttaaaaatcagatTATCCTTCTCACAGCTACTTATTTATGTTTGACCTCCCATTTTGCTGACGGTCCTCGTTCACCTTCTCACATATACATGAATGTAAAATCTGGGCCTCGTCCCCCAACCGTCATTCAGGTCTGTTTGAATGAAGGTTGAAAGTCTTAACTAATAAACCCATAAATATTTGTAACCAAAGAGCTGATTCATTTTGTAAGTGAAGTTACTTTAAAATGATtttatatacatactgtattatgaaaccgtttctttgtttttgtttgttttatatACTGACACAAACCAAATTGTGTATTTTCTGTCTTTTGCCTAAATGTTAGATTGTATTCCCAAGAGTTTCACATTATCGCACTGCGTTGTATGAAATGCACCTATTTTAGTTTTGTTGTCTTGTATACTAATTCATATTTGATTCCAAGCGGTCACTGATTTTAAGACTTGCAAGATTGTTTCTCTTTCTCATCTTACCAATCGCCTCACTTGGCATCATGGTTAGGTCAGCCTGCATTGGCACCCTGGCGGTATTTATCATTGGGGATTTATTTTTATGTTAGGTTCGTTTTAACGTATTATAACGTTCTGTTACTGATCATTAAGTAACTTGCCTCCAGTTTTTTTTAACGTGTTTTAAATGATTTGAAGTTTGATTTGAAAAGTTAATTCAATTTCTTCATTAGATCACATGAATGATTTGCATACAAATTTCACCTAATGTAATTTGAGAGTTTTAACACATGCCAACTtgaatataaatacatttgcactgTGATGCACATCAATCTCGTTTTCATGTTGAAGCCTATTGTTGAGTGACATAATGACACTCCTGCAAGACACACTAGTGTCACTTTTTTGTAACAAAGACATACTCACTGGTTCATTTATACAACATCCAATATGCAGTATATTATGTGCCTTTGTGTTGCTAAATGTGCGATCAATTTGATTGACTA

Function

symbol description
sptlc1 Predicted to enable serine C-palmitoyltransferase activity. Predicted to be involved in ceramide biosynthetic process and sphingosine biosynthetic process. Predicted to act upstream of or within biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in hereditary sensory and autonomic neuropathy type 1A. Orthologous to human SPTLC1 (serine palmitoyltransferase long chain base subunit 1).

NR:

description
serine palmitoyltransferase 1

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K00654 SPT; serine palmitoyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976704.1 False 2638 mRNA 0.44 15 8881054 8900229
XM_036976703.1 True 2692 mRNA 0.44 16 8881063 8900229

Neighbor

gene id symbol gene type direction distance location
cdc42se2 cdc42se2 coding upstream 32066 8775134 ~ 8849107 (+)
lyrm7 lyrm7 coding upstream 108665 8769784 ~ 8772389 (+)
LOC118964742 NA coding upstream 169013 8707739 ~ 8712041 (+)
chsy3 chsy3 coding upstream 179718 8517256 ~ 8701336 (+)
minar2 kiaa1024l coding upstream 365419 8510633 ~ 8515635 (+)
ror2 ror2 coding downstream 523 8900752 ~ 9028540 (+)
trnas-uga NA coding downstream 42843 8943072 ~ 8943145 (+)
nfil3 nfil3 coding downstream 140820 9041049 ~ 9046725 (+)
auh auh coding downstream 148495 9048724 ~ 9099002 (+)
LOC110523155 diras2 coding downstream 298686 9198915 ~ 9203854 (+)
G363108 NA non-coding upstream 46360 8833957 ~ 8834694 (+)
G363054 hint1 non-coding upstream 115412 8760831 ~ 8765642 (+)
G363042 NA non-coding upstream 134669 8746161 ~ 8746385 (+)
G363027 NA non-coding upstream 155881 8724943 ~ 8725173 (+)
G363165 NA non-coding downstream 41765 8941994 ~ 8942544 (+)
G363249 NA non-coding downstream 193682 9093911 ~ 9094504 (+)
G363223 NA non-coding downstream 200038 9100267 ~ 9100945 (+)
G363258 NA non-coding downstream 211894 9112123 ~ 9112623 (+)
G363262 NA non-coding downstream 214974 9115203 ~ 9115428 (+)
G362662 NA other upstream 961489 7918922 ~ 7919565 (+)
G362554 NA other upstream 1188540 7690440 ~ 7692514 (+)
G362297 zbtb43 other upstream 1691235 7185926 ~ 7189819 (+)
G361671 NA other upstream 2953128 5803828 ~ 5927926 (+)
G364850 NA other downstream 328609 9228838 ~ 9229231 (+)
G365197 NA other downstream 948474 9848703 ~ 9849154 (+)
G366748 NA other downstream 2076453 10976682 ~ 10977152 (+)
G366973 NA other downstream 2525413 11425642 ~ 11428710 (+)
G367684 NA other downstream 2978100 11878329 ~ 11880035 (+)

Expression


Co-expression Network