nfil3 (nfil3)


Basic Information

Item Value
gene id nfil3
gene name nfil3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9041049 ~ 9046725 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601575.2
ACTGTTTGTGCTGTTGGCAGAATACTAGTGTCACTCCGAAAGGAAAAGCGAAGCAGACAAGGAACGTTTCTCCAAATTTACTGGATTTTTACCTCCGGCAAAACTATTTGTTTTTGTAAATCAGAAACTCAGCCTATACTCTTTTACACGGTATACATCGGAAAACAATACTTTTTTTATCAACCTGATGCTTGAAAAgCTTTGGTGAATTCTAAAGGACCATTCCCCTGTTGGAACTACCATTGTTGGACACAAATGTCATTGGTACCTTTTGGTTTAAGATAACGAGATGTCCAGTCAAAAGGACTAAGGACCTATGAGTTTCTTGAACACAAATATCCCAATCGTTGAAATATGCAGACCATCAAGAGTGAGCCACTGTCAAATGGCTCCTACAGCGGAGAGGACGCCCTGGTTCTGGCTGTGGCCCTTCAAGGGGCCGACAGGGATCTGATGGACCACAAGCTCTCCACCATGCCCTTCAAGGCCAAAGGCACCTCCTGCCGCAGGAAACGGGAGTTCATCCCCGACGAGAAGAAAGACAATCTCTACTGGGAGAGGCGACGCAAGAACAACGAGGCGGCCAAGCGTTCGCGGGAGAAGCGGCGCCTCAACGACATGGTGCTGGAGAACAAGCTGCTGGCCCTGGGCGAGGAGAACGCTTCCCTCAAAGGAGAGCTGCTGGCCCTGAAACTCAAATTCGGCCTGGTCAGCTCTGCGGCCTACACGCAGGAAGTGCAGAAGATCTCTGTTACAACGGCCGCCCTCTACCACGACTTTGTCTCGCCGGGCGAAGCCCGAGGCTCTTGCATCAGGGACCTAGAGTCCCCTCACCTGGGCAGCAGCTGCATATCGGTCATCAAGCACTCCCCTCACAGCACGCTGTCTGACATGGCCGAAATCTCTGCAGCGACCAAGGGTAGCATGTGCAGGACCCCCGAGATCATCAAGCAAGAGCCAGCGGAGCACAGAAGCTACGTGCGTGAGAGGAGCAGTCCATACGAACTGTACAGGAACTACATTACCAGCCCTTTCCCCGGGGTTTACTCCCAACCCTCCCCGTTCCTGCCGCTCACCAGGTCGATCAGCAACTCCCCGAGGACCTCGGACGACGGGGCCGTGAGTAAGTCCTCGGACGGCGAGGATGAGCAGCAGGTCCCCAAAGGCCCCATGCCACATGCCGCTGACCCGAAGAGCGTCATCGTATCCCGCCTCAAAGTGCCAGATGCTTGTTCGTCGGCTCTGCCCCACAAACTGCGGCTCAAGAACAGGGCCATTCCAATCAAAGTGGAGGCCATCGACCCCGACTACGACTCTTCTGGAAagtcctcctctcccatcgaCATGTCGGCCAGAGAAGACTACCAGAGGGGCCAGGGTGCTGTGGCAGACTACATGCAGTCGCCCCTCAGCCCCTTGTCACTCCAAGTGACCAACATCCGGGATTGGACCCACCGACCAGAGCACTGGCACAAAGACAGCTCAGAGAAGCCACAAAATGGCTACCAGAACAGGCTCTCCCCGGTCCCTGTCTCCAAAAAACTCACTCTGGACCTTGAAGACGGCTCCTACGCCCACTCAGACTCTGAGAACTTGTACTTAAAACGAGGCATAGCTGACCTGTCTGCAGAAGTTTTGTCTCTGAAAAGACTGATAACATCGAGGCAAGGGTCCGTGATAGAATCAACCAAAAGCACTACTGATCATGAGTCATTATCGAAAGGATGTTACTCAAAATGAGTTCTGTTTGCACAATGCCTTGTTTTCCACTGTATTTACTATTGCACTGTGCGGTTGATATGGTGTATAAACGCAGTACATTTAAAATGAATGGTGTGTTGTGCACTTGCTGTTGTAGTTCGGCGTATCTTCTCCATAACTCCACCTGTAACCCAAAGCCAAATGTCAGGCTGAGGCTACTGTACATGCACATTTTATGTCAACTTTTGAACGTTTTGTTGTAAATGGTGACTTTTTTTGTTGACAATAAATATGTGTAAGCACTGaa
>XM_021601577.2
GCAGAATACTAGTGTCACTCCGAAAGGAAAAGCGAAGCAGACAAGGAACGTTTCTCCAAATTTACTGGATTTTTACCTCCGGCAAAACTATTTGTTTTTGTAAATCAGAAACTCAGCCTATACTCTTTTACACGGTATACATCGGAAAACAATACTTTTTTTATCAACCTGATGCTTGAAAAgGCTCGATAACTACCAGTAAACATTACGCGCAGACGGAACATGGCACAGTGACCTGGAATTCGATGTGGGTGGATTTGCTGCTGTCTCTCTGCGGATGGAAATAACTTTGGTGAATTCTAAAGGACCATTCCCCTGTTGGAACTACCATTGTTGGACACAAATGTCATTGGTACCTTTTGGTTTAAGATAACGAGATGTCCAGTCAAAAGGACTAAGGACCTATGAGTTTCTTGAACACAAATATCCCAATCGTTGAAATATGCAGACCATCAAGAGTGAGCCACTGTCAAATGGCTCCTACAGCGGAGAGGACGCCCTGGTTCTGGCTGTGGCCCTTCAAGGGGCCGACAGGGATCTGATGGACCACAAGCTCTCCACCATGCCCTTCAAGGCCAAAGGCACCTCCTGCCGCAGGAAACGGGAGTTCATCCCCGACGAGAAGAAAGACAATCTCTACTGGGAGAGGCGACGCAAGAACAACGAGGCGGCCAAGCGTTCGCGGGAGAAGCGGCGCCTCAACGACATGGTGCTGGAGAACAAGCTGCTGGCCCTGGGCGAGGAGAACGCTTCCCTCAAAGGAGAGCTGCTGGCCCTGAAACTCAAATTCGGCCTGGTCAGCTCTGCGGCCTACACGCAGGAAGTGCAGAAGATCTCTGTTACAACGGCCGCCCTCTACCACGACTTTGTCTCGCCGGGCGAAGCCCGAGGCTCTTGCATCAGGGACCTAGAGTCCCCTCACCTGGGCAGCAGCTGCATATCGGTCATCAAGCACTCCCCTCACAGCACGCTGTCTGACATGGCCGAAATCTCTGCAGCGACCAAGGGTAGCATGTGCAGGACCCCCGAGATCATCAAGCAAGAGCCAGCGGAGCACAGAAGCTACGTGCGTGAGAGGAGCAGTCCATACGAACTGTACAGGAACTACATTACCAGCCCTTTCCCCGGGGTTTACTCCCAACCCTCCCCGTTCCTGCCGCTCACCAGGTCGATCAGCAACTCCCCGAGGACCTCGGACGACGGGGCCGTGAGTAAGTCCTCGGACGGCGAGGATGAGCAGCAGGTCCCCAAAGGCCCCATGCCACATGCCGCTGACCCGAAGAGCGTCATCGTATCCCGCCTCAAAGTGCCAGATGCTTGTTCGTCGGCTCTGCCCCACAAACTGCGGCTCAAGAACAGGGCCATTCCAATCAAAGTGGAGGCCATCGACCCCGACTACGACTCTTCTGGAAagtcctcctctcccatcgaCATGTCGGCCAGAGAAGACTACCAGAGGGGCCAGGGTGCTGTGGCAGACTACATGCAGTCGCCCCTCAGCCCCTTGTCACTCCAAGTGACCAACATCCGGGATTGGACCCACCGACCAGAGCACTGGCACAAAGACAGCTCAGAGAAGCCACAAAATGGCTACCAGAACAGGCTCTCCCCGGTCCCTGTCTCCAAAAAACTCACTCTGGACCTTGAAGACGGCTCCTACGCCCACTCAGACTCTGAGAACTTGTACTTAAAACGAGGCATAGCTGACCTGTCTGCAGAAGTTTTGTCTCTGAAAAGACTGATAACATCGAGGCAAGGGTCCGTGATAGAATCAACCAAAAGCACTACTGATCATGAGTCATTATCGAAAGGATGTTACTCAAAATGAGTTCTGTTTGCACAATGCCTTGTTTTCCACTGTATTTACTATTGCACTGTGCGGTTGATATGGTGTATAAACGCAGTACATTTAAAATGAATGGTGTGTTGTGCACTTGCTGTTGTAGTTCGGCGTATCTTCTCCATAACTCCACCTGTAACCCAAAGCCAAATGTCAGGCTGAGGCTACTGTACATGCACATTTTATGTCAACTTTTGAACGTTTTGTTGTAAATGGTGACTTTTTTTGTTGACAATAAATATGTGTAAGCACTGaa

Function

symbol description
nfil3 Predicted to enable DNA binding activity and DNA-binding transcription factor activity. Acts upstream of or within heart development and myeloid cell development. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in brain; margin; retina; and tail bud. Orthologous to human NFIL3 (nuclear factor, interleukin 3 regulated).

NR:

description
nuclear factor interleukin-3-regulated protein

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0061515 myeloid cell development biological_process
GO:0007623 circadian rhythm biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09059 NFIL3, E4BP4; nuclear factor, interleukin 3 regulated

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601575.2 False 2008 mRNA 0.51 2 9041049 9046725
XM_021601577.2 True 2096 mRNA 0.51 3 9041065 9046725

Neighbor

gene id symbol gene type direction distance location
ror2 ror2 coding upstream 12509 8900752 ~ 9028540 (+)
trnas-uga NA coding upstream 97904 8943072 ~ 8943145 (+)
sptlc1 sptlc1 coding upstream 140820 8881054 ~ 8900229 (+)
cdc42se2 cdc42se2 coding upstream 192061 8775134 ~ 8849107 (+)
lyrm7 lyrm7 coding upstream 268660 8769784 ~ 8772389 (+)
auh auh coding downstream 1999 9048724 ~ 9099002 (+)
LOC110523155 diras2 coding downstream 152190 9198915 ~ 9203854 (+)
pdzph1 LOC106571915 coding downstream 240332 9287057 ~ 9303171 (+)
st8sia4 LOC100135820 coding downstream 613087 9659812 ~ 9677491 (+)
LOC110522837 tmem217 coding downstream 643784 9690509 ~ 9691996 (+)
G363165 NA non-coding upstream 98505 8941994 ~ 8942544 (+)
G363108 NA non-coding upstream 206355 8833957 ~ 8834694 (+)
G363054 hint1 non-coding upstream 275407 8760831 ~ 8765642 (+)
G363042 NA non-coding upstream 294664 8746161 ~ 8746385 (+)
G363249 NA non-coding downstream 47186 9093911 ~ 9094504 (+)
G363223 NA non-coding downstream 53542 9100267 ~ 9100945 (+)
G363258 NA non-coding downstream 65398 9112123 ~ 9112623 (+)
G363262 NA non-coding downstream 68478 9115203 ~ 9115428 (+)
G363270 NA non-coding downstream 84860 9131585 ~ 9131886 (+)
G362662 NA other upstream 1121484 7918922 ~ 7919565 (+)
G362554 NA other upstream 1348535 7690440 ~ 7692514 (+)
G362297 zbtb43 other upstream 1851230 7185926 ~ 7189819 (+)
G361671 NA other upstream 3113123 5803828 ~ 5927926 (+)
G364850 NA other downstream 182113 9228838 ~ 9229231 (+)
G365197 NA other downstream 801978 9848703 ~ 9849154 (+)
G366748 NA other downstream 1929957 10976682 ~ 10977152 (+)
G366973 NA other downstream 2378917 11425642 ~ 11428710 (+)
G367684 NA other downstream 2831604 11878329 ~ 11880035 (+)

Expression


Co-expression Network