LOC110523157 (lyz2)


Basic Information

Item Value
gene id LOC110523157
gene name lyz2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9303644 ~ 9306869 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601582.2
TATCAATGTCTCTTTCATCCTGAGCCTTTATAAGGAAAGCTGAAGTTGACTTGCTCACACTTTTAGAGACACAGGCCTTCTTTTCATCCAAACCATTAGACCTAGCTGTCTGTGTTCATAATGAGAGCTGTTGTTGTTCTCCTGCTTGTGGCTGTGGCCAGTGCTAAGGTGTATGACAGATGTGAGCTGGCCAGAGCGCTGAAGGCATCCGGAATGGATGGCTACGCTGGAAACAGCCTGCCCAACTGGGTTTGCCTGTCAAAATGGGAGTCGAGCTACAATACCCAGGCCACCAACCGCAACACCGACGGCTCCACCGACTATGGCATCTTCCAGATCAACAGCCGCTACTGGTGTGACGACGGACGTACCCCGGGGGCTAAGAACGTCTGTGGTATCCGCTGCAGCCAGCTGCTAACTGCTGACCTCACAGTGGCGATCCGTTGTGCCAAGCGTGTGGTGTTGGACCCGAACGGAATCGGGGCATGGGTGGCTTGGCGCCTTCACTGTCAGAATCAGGACCTGAGGTCCTACGTGGCTGGCTGCGGGGTCTAAGACCATACTGGAGCAGCTGAACACTTCTCAAACCATTCTGAAGCAGACTTAACTAATAGGATGGATCCACTCTGTACTATCCATCAGCATCTGCAGCCTTAACTAGTAAACTTTCACATATTGATACATTTTAGATTTAAGCAATAAGggccaagggggtgtggtatatggccaatataccacggctaaaggctgttcttatgcacgacgcaacgctgattgcctggatacagcccttagtcatggcatattggccatataccacaaacccccgaggtgccttattgctgttataaactggttaccgacgtaattagagaagtaaaaataaatgttttgtcatacctgtggtataccacGGCGTTCAGCCAAATCACCATTCAgggttcgaaccacccagtttataatacagagTAAATCACTAATAATCAGTTTTTTTTGTGTCAAATGTATAATCATATATAATGTATAATATTACTTCATGTCAAATCAGTAAACAGCTCAACATGCTTACCcataaaaataaaacaagttcatgttt

Function

symbol description
lyz2 Enables lysozyme activity. Involved in defense response to Gram-negative bacterium and defense response to Gram-positive bacterium. Located in several cellular components, including Golgi cis cisterna; cytoplasmic vesicle; and rough endoplasmic reticulum lumen. Human ortholog(s) of this gene implicated in familial visceral amyloidosis. Orthologous to human LYZ (lysozyme).

NR:

description
lysozyme C II precursor

GO:

id name namespace
GO:0016998 cell wall macromolecule catabolic process biological_process
GO:0042742 defense response to bacterium biological_process
GO:0019835 cytolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0003796 lysozyme activity molecular_function

KEGG:

id description
K13915 LYZ; lysozyme C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601582.2 True 1096 mRNA 0.47 4 9303644 9306869
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Neighbor

gene id symbol gene type direction distance location
syk syk coding downstream 104111 9145137 ~ 9199533 (-)
LOC110524946 LOC106571878 coding downstream 439069 8857617 ~ 8864575 (-)
hint1 hint1 coding downstream 537696 8760831 ~ 8765948 (-)
LOC110523142 LOC106571805 coding downstream 1074353 8206491 ~ 8229291 (-)
LOC110524943 fbn2 coding downstream 1099126 7882389 ~ 8204518 (-)
LOC118964557 lyz2 coding upstream 11656 9318525 ~ 9321762 (-)
LOC118964743 LOC106572855 coding upstream 16045 9322914 ~ 9324963 (-)
lyz2 lyz2 coding upstream 23936 9330805 ~ 9333401 (-)
macir cssa01h5orf30 coding upstream 48352 9355221 ~ 9361224 (-)
ppip5k2 ppip5k2 coding upstream 73130 9379999 ~ 9450202 (-)
G365815 NA non-coding downstream 22593 9280801 ~ 9281051 (-)
G365814 NA non-coding downstream 23968 9279446 ~ 9279676 (-)
G365813 NA non-coding downstream 27385 9276052 ~ 9276259 (-)
G365812 NA non-coding downstream 27797 9275621 ~ 9275847 (-)
G365806 NA non-coding downstream 38698 9264743 ~ 9264946 (-)
G365796 NA non-coding upstream 46610 9353479 ~ 9452406 (-)
G365861 NA non-coding upstream 109726 9416595 ~ 9417012 (-)
G365795 NA non-coding upstream 146429 9453298 ~ 9453647 (-)
G365918 NA non-coding upstream 262759 9569628 ~ 9570863 (-)
G365923 NA non-coding upstream 271683 9578552 ~ 9578828 (-)
G365752 NA other downstream 113546 9189669 ~ 9190098 (-)
G364754 NA other downstream 252936 9047542 ~ 9099000 (-)
G364322 NA other downstream 999461 8303267 ~ 8304183 (-)
LOC110524941 LOC106572051 other downstream 2577664 6562531 ~ 6726634 (-)
G363470 LOC106572095 other downstream 2748929 6543675 ~ 6554715 (-)
G368612 ctxn3 other upstream 2827183 12134052 ~ 12136790 (-)
G368921 NA other upstream 3398697 12705566 ~ 12706092 (-)
G370333 NA other upstream 4900321 14207190 ~ 14208705 (-)
G370635 NA other upstream 5120469 14427338 ~ 14428591 (-)
LOC110524957 LOC106569957 other upstream 5686259 14988147 ~ 14995197 (-)

Expression

LOC110523157(lyz2) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2000.
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LOC110523157(lyz2) Expression in each Bioproject

Bar chart with 21 bars.
LOC110523157(lyz2) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15000.
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Co-expression Network