Gene
RNA
| Item | Value |
|---|---|
| gene id | lyz2 |
| gene name | lyz2 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 9330805 ~ 9333401 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| lyz2 | Enables lysozyme activity. Involved in defense response to Gram-negative bacterium and defense response to Gram-positive bacterium. Located in several cellular components, including Golgi cis cisterna; cytoplasmic vesicle; and rough endoplasmic reticulum lumen. Human ortholog(s) of this gene implicated in familial visceral amyloidosis. Orthologous to human LYZ (lysozyme). |
| description |
|---|
| lysozyme C II precursor |
| id | name | namespace |
|---|---|---|
| GO:0016998 | cell wall macromolecule catabolic process | biological_process |
| GO:0042742 | defense response to bacterium | biological_process |
| GO:0019835 | cytolysis | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0003796 | lysozyme activity | molecular_function |
| id | description |
|---|---|
| K13915 | LYZ; lysozyme C |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| NM_001124716.1 | True | 1015 | mRNA | 0.47 | 4 | 9330805 | 9333401 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118964743 | LOC106572855 | coding | downstream | 5842 | 9322914 ~ 9324963 (-) |
| LOC118964557 | lyz2 | coding | downstream | 9043 | 9318525 ~ 9321762 (-) |
| LOC110523157 | lyz2 | coding | downstream | 23936 | 9303644 ~ 9306869 (-) |
| syk | syk | coding | downstream | 131272 | 9145137 ~ 9199533 (-) |
| LOC110524946 | LOC106571878 | coding | downstream | 466230 | 8857617 ~ 8864575 (-) |
| macir | cssa01h5orf30 | coding | upstream | 21820 | 9355221 ~ 9361224 (-) |
| ppip5k2 | ppip5k2 | coding | upstream | 46598 | 9379999 ~ 9450202 (-) |
| pam | pam | coding | upstream | 121060 | 9454461 ~ 9610550 (-) |
| LOC118964558 | NA | coding | upstream | 149723 | 9483124 ~ 9484809 (-) |
| LOC118964744 | NA | coding | upstream | 290369 | 9623770 ~ 9624739 (-) |
| G365815 | NA | non-coding | downstream | 49754 | 9280801 ~ 9281051 (-) |
| G365814 | NA | non-coding | downstream | 51129 | 9279446 ~ 9279676 (-) |
| G365813 | NA | non-coding | downstream | 54546 | 9276052 ~ 9276259 (-) |
| G365812 | NA | non-coding | downstream | 54958 | 9275621 ~ 9275847 (-) |
| G365806 | NA | non-coding | downstream | 65859 | 9264743 ~ 9264946 (-) |
| G365796 | NA | non-coding | upstream | 20078 | 9353479 ~ 9452406 (-) |
| G365861 | NA | non-coding | upstream | 83194 | 9416595 ~ 9417012 (-) |
| G365795 | NA | non-coding | upstream | 119897 | 9453298 ~ 9453647 (-) |
| G365918 | NA | non-coding | upstream | 236227 | 9569628 ~ 9570863 (-) |
| G365923 | NA | non-coding | upstream | 245151 | 9578552 ~ 9578828 (-) |
| G365752 | NA | other | downstream | 140707 | 9189669 ~ 9190098 (-) |
| G364754 | NA | other | downstream | 280097 | 9047542 ~ 9099000 (-) |
| G364322 | NA | other | downstream | 1026622 | 8303267 ~ 8304183 (-) |
| LOC110524941 | LOC106572051 | other | downstream | 2604825 | 6562531 ~ 6726634 (-) |
| G363470 | LOC106572095 | other | downstream | 2776090 | 6543675 ~ 6554715 (-) |
| G368612 | ctxn3 | other | upstream | 2800651 | 12134052 ~ 12136790 (-) |
| G368921 | NA | other | upstream | 3372165 | 12705566 ~ 12706092 (-) |
| G370333 | NA | other | upstream | 4873789 | 14207190 ~ 14208705 (-) |
| G370635 | NA | other | upstream | 5093937 | 14427338 ~ 14428591 (-) |
| LOC110524957 | LOC106569957 | other | upstream | 5659727 | 14988147 ~ 14995197 (-) |
