macir (cssa01h5orf30)


Basic Information

Item Value
gene id macir
gene name cssa01h5orf30
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9355221 ~ 9361224 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601583.2
CTGTCAGTACACTCATAACAACAGCCtaagcattacgaaacttctattagatcaaataagcctcacgtatCAAAATAGAAATGCATTTTTTTATATTGACTAAATTCGACACTAAATGTCTCCCATACAAAAACTCTTCACTTGCTTAATAATTAATTATTTGCTGAACGTGGAGAGATTTTGGGCGGAGTAAACCTTCTCgttttgcctcttcctctccgaTTTGGCTCAAATAAGAAGAGGCGTGAACGTCGGGTGGCTTTGCTGTTGAACAGGTCATGTCGGTAAAGATGGAAATGGATGTCAGTGGCGTGTCCAGGACACCCATCTCTGTTCTACCTGCTGCTGCAGAGGTCAAAGCCATGCTGAAACCCGATACAGGGGACAGGCCCCGCTGTGCCAGCACCCCCTGCTCCCCCATCAAAAGTACTGTTTCAGGCTTCCAGATTCTCCACATGGACTCCAACTACCTAGTCGGCTTCACCACCGGCGAGGAGCTGCTAAAACTAGCCCACAAGTGGTCTCCCAACCCAGAGAAGACCCTTATCACCACACCGACCACCACAACGTCAACAGCATCAGAGGCCTTGCCCAGTTCTGTCCCCAAACCCATGGACCTGGGCATCCACCGGGCGTCGCGCATCTACAAAGCCAAAAACCGCTACTACCAGCCATACGACATCCCCGTGGTCAACGGGCGCCGGCGTAGGCGCATGCCCAGCTCAGGTGACCCCTACCTCAGGCCCCTGTCCCAAGGGGAGGGTGGCCCAGGGAGGGCCCTGCACCACGGCCCCCTGCCCCTCTGCCTTCTCAAGGGGAAGAGGGCCCAGTCCAAGTCCCTGGACTACCTCAACCTGGACAAAATGAGTGTCAAGGAGCCTCCGGCCGACACAGAGGTGCTGCAGTTCCAGCTCCAGCACCTGACGCTGCGGAGCGAGCGCATGTTCACCAGGAACAAGACATGAAGCAACACCAGAGTCACCACCCGCCTGTTCTCTCATCCACTCCCATGGGATTTGGGTGCTATTTCCGGCTGTGCGTTTCTCTCCCTACTCAGATCATAGGATAGTCCTTTAAGGGGACACTTGCGGAGACCACTAATCTTGTTATTATTATGAATCGAGGGTGACAAACTAAGCGGGTCTCTTGACGAAATGAGACGCATGCTTACGTATACGTAAAAATCCAGTGAACACAAATTGTTAAGTTAGTACACTGAAAACAGAGGTCGTTTTAGATACAAAAATGTGAAGTTCGTCAGGATTAGCAATAACTGGTAAACGTAtttattgactgtgtgtgtgtatgtgtgtgcgcgcaccTTTTTAAAAATGGTAAGGGATGTGGTAACCAATGCCTCTCCAACTGGCCCCTTTTTTTTCTGCATTGGACTGCACTGTTAGACATATTATGTTTTTACAGACCTTGCATCCTCAACTACAACACACCTTTACTTTTTAACCACTTTACACCCATAGCAATTAGCATTAGCCGCAGCAGTACTGCATTCTACATCCATAGCAATTAGCATTAGCCCCAGCAGCACTGCACTCTACATCCATAGCAATTAGCATTAGCCCCAGCAGTACTGCACTGTACATCCATAGCAATTAGCATTAGCCTCAGCAGTACTGCACTTTACATCCATACCAATTAGCATTAGCCCCAGCAGTACTGCACTTTACATCCATACCAATTAGCATTAGCCCCAGCAGTACTGCACTTTACATCCATACCAATTAGCATAAGTCCCAGCAGTACTGCGCTATACGTCCATAGCAATTAGCATTAGCCAAAACAGTACTGTGCTATACATCCATAGCAATTAGCATTAGCCCCAGCAGTACTGTATGTAagctactgtatatctgtatgtgtgtggatgtataggggcggcaggtagcctagtggttagagtgttagaccagtaaccgaaaggttgctagatcaaatccccgagctgacagggtttaaaaaaaagtctgtcattctgcccctgaacaagacagttaacacaactcttcctaggccatcattgtaaataagaatttgtttcttaactgacttgcctagttaaataaagtttttttttttaaatgtgaaagCTCACTCCGCTACACTACTATTTTGCTCTTGCCATCACCAGGGAAATGTGGGTTTAATGTTAAACCACTGACTGTTACACAATCAAAAGGTTATTTAAAACATAATCCtgtaaaggggcaatctgcagttactgcatccatttttggacttgtaaATTGATGATACTcatttgattcttgaagaatataacttttaaatgcctcatgagctttagttcaactgtcgttgCCCATCAGAACTTAAAATATATGCTTGTTTTACCCCACTGTTTGTAAACAGTAAatataaacaaacactatatatatatatatatatatcaaaacatggttaaaacgatAATTTTCCTATCATtggtggtcagtccttgcattcatatctatgaatttgagtgttgGTTACATTTCtgcagccccatccctcagctttttaccgaaacggGGGCGGAGGAAACGCTTTCTTATTgcttcaactgctgattgctgctCTAAGAGGATTTGTGGGGAGAGGCTTACCGTCAGAGTGCCTGAGGTGAGATTAGCTCCTTATATACAGAATTAATCCCCTCACTCCATTTCTCCCAGTCAGACTGAATCCTCAGCAGGGGGTGAGGGGTTGAATTAGGAGATTCCAGATTTTCTGCATCTAGACGTTGTGTCCATCATTCTGAATCCCAGTCATTCTTTTCATTTCCTGAATGGGAGGGATGGGTGTTTTAGCCTGGGTAAAAGGTTCTCAATTTAGTTTGATGTTTTTGCCACCCCTTCATAAAGGTGTGTAAAGCACCTGAAACACGTACCGTAGCTATGGAAACCAAAGGAGGATTATTTTGGGGTGCCCTGGGAAAACTTGACCACATTGAAATATGATCTATTTGGGGTTTCGTAGGACACGTGACAATCATTTTGAGGCGTAATCTTGGAGAACACCTTACTTGAAGTAGCCCTGACCTAATGCCCTCATAACACAATCATTTGCATGATATAAATGATCTGATAGTCTCTTACCAATGACAATTTACCTATTATAAGCCATATGACATGTAATGGTAACTATACACTGAGTGAACGAAACATTAAGGACACTttactaatattgagttgtcAACACATGACAGTAAAGTCCACCATCTCATGACTAGACATTTCTGGTCTTTCTCAATACTGTAATTCACCAAGCGACCAAAATGGTGACATTTTTGGAAAGATCACCtttcctccttcctttcctccagaCATGCAAAACTACAGCTAGGCAGGGTATTGGTCCAGacatttacactgagtgtacaacatattaagaacaccttcctaatattgagttgcacccccttttgccctcagaacagcctcaattcgttgaggGTGTGGACTCTAGAAgttgtcaaaagcgttccacagggatgctggcccatgttgactccaatgcttcccacagttgtgtcaagttggctggatgtccttggggtggtggaccattcttgatacacacgtgaAACTGTTa

Function

NR:

description
UNC119-binding protein C5orf30 homolog

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0060271 cilium assembly biological_process
GO:0035869 ciliary transition zone cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601583.2 True 3606 mRNA 0.45 2 9355221 9361224

Neighbor

gene id symbol gene type direction distance location
lyz2 lyz2 coding downstream 21820 9330805 ~ 9333401 (-)
LOC118964743 LOC106572855 coding downstream 30258 9322914 ~ 9324963 (-)
LOC118964557 lyz2 coding downstream 33459 9318525 ~ 9321762 (-)
LOC110523157 lyz2 coding downstream 48352 9303644 ~ 9306869 (-)
syk syk coding downstream 155688 9145137 ~ 9199533 (-)
ppip5k2 ppip5k2 coding upstream 18775 9379999 ~ 9450202 (-)
pam pam coding upstream 93237 9454461 ~ 9610550 (-)
LOC118964558 NA coding upstream 121900 9483124 ~ 9484809 (-)
LOC118964744 NA coding upstream 262546 9623770 ~ 9624739 (-)
LOC110522838 NA coding upstream 394063 9755287 ~ 9756985 (-)
G365815 NA non-coding downstream 74170 9280801 ~ 9281051 (-)
G365814 NA non-coding downstream 75545 9279446 ~ 9279676 (-)
G365813 NA non-coding downstream 78962 9276052 ~ 9276259 (-)
G365812 NA non-coding downstream 79374 9275621 ~ 9275847 (-)
G365806 NA non-coding downstream 90275 9264743 ~ 9264946 (-)
G365861 NA non-coding upstream 55371 9416595 ~ 9417012 (-)
G365795 NA non-coding upstream 92074 9453298 ~ 9453647 (-)
G365918 NA non-coding upstream 208404 9569628 ~ 9570863 (-)
G365923 NA non-coding upstream 217328 9578552 ~ 9578828 (-)
G365972 NA non-coding upstream 308385 9669609 ~ 9670168 (-)
G365752 NA other downstream 165123 9189669 ~ 9190098 (-)
G364754 NA other downstream 304513 9047542 ~ 9099000 (-)
G364322 NA other downstream 1051038 8303267 ~ 8304183 (-)
LOC110524941 LOC106572051 other downstream 2629241 6562531 ~ 6726634 (-)
G363470 LOC106572095 other downstream 2800506 6543675 ~ 6554715 (-)
G368612 ctxn3 other upstream 2772828 12134052 ~ 12136790 (-)
G368921 NA other upstream 3344342 12705566 ~ 12706092 (-)
G370333 NA other upstream 4845966 14207190 ~ 14208705 (-)
G370635 NA other upstream 5066114 14427338 ~ 14428591 (-)
LOC110524957 LOC106569957 other upstream 5631904 14988147 ~ 14995197 (-)

Expression


Co-expression Network