LOC118964558


Basic Information

Item Value
gene id LOC118964558
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9483124 ~ 9484809 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051635.1
TACGGATGGGAGGGAGGGCTCTGCTGCAAACAACCATTTTTCTACAAACCAGAGCAGCAATAAATAACAGTATTGAACATCCTTCTGATTCAATCAGCATGTACCATTAATAAGTAAATACATTGAAGAGTGGTCTCTCTGGTCTAATGATGTCTCCATTTTGGCCCTTTTGGCTTTTCATAACAAAGCCGCTCGACATTTAGTTGATTGTAGAGTAGTTGCTAAATAGCTAGTGTATGTCAGTGAACATTTGCATCTTAGTCATTTAGaatacgctcttatccagagcgacttacagtaaggAGTGTATAAATGTTTATACATTTTcctactggtcccccgtgggtaTCGAATGAGCACTCTATACAGGCTTGTTATAGCCACTAGTACAGTACGTCTTCACTACCTTCAGGATAACGACCCtggacaaaaacaataaagcttaaagctgcaatatgtcagcGACCCGACCCGACCAAATCCACATAGAAATATTCTTGGATCAACAAGGACAGTTATGGCCTTATGTTGATGGGGATAACCTGCTTGACTGAGGAGGCCCTCTGGACACGAACCACAGAGGGAGCTCTGTACCAAGCAATCACCTTAATTGCTATTCATGTTACCTCAATCACTATCAGGCACTTCACACACCAGTCAAACATTGGAATTATCTGAAATCTTATCTGTCTATTGAGCCTTAGAGCAAGCAAAGAAAATAGTTATTGATCTCCATTGATGGTACGTGATTTGTCTAATAcagtagggcggcaggtagcctagtggttagagtgttgggccagtaactgaaaggttgctggatcgattccctgagctgacaaggtaaaaatctgtcattctgcccctgagcaaggcagttaacccgctgttccctggGCACCGAAGACGTGGGTGTCGATTTAAGGCAGCTCCCTGCacctttctgattcagaggggttgggttaaatgtagaAGACACAAggtattcagttgtacaactgactaggtatcaacaGCAGTTTGTTGTTATTGCTGGAACTCAAATGAGATTCTGCCTAGAAACATTAGAGTCACTGGCAGAATGTTTACACGTGATCGTTGGGATCAGACTTAAAGGCAATTGTCCATCCAAATTTCAACATGGCATATTGGTTTCCTGTAAGCAGTGTATGGATATGGTTAGACAGCAATCCATGTTCTGGTTTTGTCCAttgactgcttacagggtaagtaAACCAATGTTAAATGTGTGAATTGGGTGAACTTTCCTTTTAAAAGCTATGGTCTGACAATGGCTCCACTGATTGTGAGATGGATCTACACCCTCGTCTCTGACTACTTGAGCCACTTAAAGTGATTGTGTCATCTTCTTCCAGGAGAGTTAATCATTCTTCCTATCCCTGTCTGGCCAGCCCTGATGCATGACTACCTGATTTAGTGCCTCTGAGCTAATCAGATGCCAGCAGGGAATTTCATTAAAACGGCAATAAAATAAAGATCTTCCTGCCTTGTCTCTTGGGGTTGGTTTCTGTGTGCCAAGTTGAGTGGGGTTTGTGTTTGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051635.1 True 1561 mRNA 0.43 2 9483124 9484809

Neighbor

gene id symbol gene type direction distance location
ppip5k2 ppip5k2 coding downstream 32922 9379999 ~ 9450202 (-)
macir cssa01h5orf30 coding downstream 121900 9355221 ~ 9361224 (-)
lyz2 lyz2 coding downstream 149723 9330805 ~ 9333401 (-)
LOC118964743 LOC106572855 coding downstream 158161 9322914 ~ 9324963 (-)
LOC118964557 lyz2 coding downstream 161362 9318525 ~ 9321762 (-)
LOC118964744 NA coding upstream 138961 9623770 ~ 9624739 (-)
LOC110522838 NA coding upstream 270478 9755287 ~ 9756985 (-)
reep5 reep5 coding upstream 278106 9762915 ~ 9775557 (-)
zgc:114200 LOC106571615 coding upstream 372758 9857567 ~ 9869211 (-)
tpm2 LOC106571564 coding upstream 394440 9879249 ~ 9911220 (-)
G365795 NA non-coding downstream 29477 9453298 ~ 9453647 (-)
G365796 NA non-coding downstream 30718 9353479 ~ 9452406 (-)
G365861 NA non-coding downstream 66112 9416595 ~ 9417012 (-)
G365815 NA non-coding downstream 202073 9280801 ~ 9281051 (-)
G365814 NA non-coding downstream 203448 9279446 ~ 9279676 (-)
G365918 NA non-coding upstream 84819 9569628 ~ 9570863 (-)
G365923 NA non-coding upstream 93743 9578552 ~ 9578828 (-)
G365972 NA non-coding upstream 184800 9669609 ~ 9670168 (-)
G365980 NA non-coding upstream 208319 9693128 ~ 9693350 (-)
G366019 NA non-coding upstream 236883 9721692 ~ 9722913 (-)
G365752 NA other downstream 293026 9189669 ~ 9190098 (-)
G364754 NA other downstream 432416 9047542 ~ 9099000 (-)
G364322 NA other downstream 1178941 8303267 ~ 8304183 (-)
LOC110524941 LOC106572051 other downstream 2757144 6562531 ~ 6726634 (-)
G363470 LOC106572095 other downstream 2928409 6543675 ~ 6554715 (-)
G368612 ctxn3 other upstream 2649243 12134052 ~ 12136790 (-)
G368921 NA other upstream 3220757 12705566 ~ 12706092 (-)
G370333 NA other upstream 4722381 14207190 ~ 14208705 (-)
G370635 NA other upstream 4942529 14427338 ~ 14428591 (-)
LOC110524957 LOC106569957 other upstream 5508319 14988147 ~ 14995197 (-)

Expression


Co-expression Network