reep5 (reep5)


Basic Information

Item Value
gene id reep5
gene name reep5
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9762915 ~ 9775557 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001165180.1
ACTCTGAACAGCGAGAAGAAGCAGGATAGAGTTGCATGGGTGTCGCAGTTCAATAGCCAACCAGCACCATACAACACGAAAATCATGGCAGCAATGGTACAGGACATAAAAGAGAGATTCGACAAGTTTCTTCATGAAAAGAATTTCATGACCGATGCATTGGCAAAGATAGAAGCTAAAACTGGAGTAAACAGGGCCTATATCGCAATCGTTGTCGTCGTCATTCTCGCAATTTACCTGGTTATTGGGTATGGAGCCTCCCTACTGTGCAACCTCATCGGATTTGTTTATCCAGCCTACATATCGATCAAAGCCATTGAGAGTGTAACCAAAGATGATGACACAAAATGGCTGACCTACTGGGTGGTGTATGGAGTGTTCAGCGTGGCAGAGTTCTTTGCTGACATCTTCCTGTCCTGGTTCCCATTTTACTACATGGGAAAGTGTGCCTTCTTGGTGTGGTGCATGGCTCCAACTCCTTCTAACGGATCCATCCAGATATACACGCGGATCATCCGCCCCATCTTCCTCAAGCACGAGTCCAAGATTGACAACATAGCCAAGGACCTCAAGGGCAAGGCGACAGAGGCTGCGGACAAGTTCAAAGATGAAGCGAAGAAAGCGACGGCGAACATAATGTGGGAGGAGGGGATGAAGAAGGACTCCTAAAGGCGCCGCGAGGACAAAGTTCACAAAGTTCAACAGCATTGTCATCTCTGGAGTGGACTGTGTTACACAGCTCATAAATGTTGCCttggattttttttattgtttattattttATAAATTATCTGAAGGATAGCATCTTGGTCTTGCACAGtttgtctgtaaaaaaaaaataaaaaaaacacagcgATAGATGGTCACGTATCCAAGAGTGATGTAAAACCGTTTGAAACCTTTAACTTGTTTGCGTACCTTTAGGCTGTAATGAGCCAGTGATGTTGTTTCTCCTCCTGCTACGCTTTAAGtacccaaataaaataaaaaagaaactTGCTGTTATT

Function

symbol description
reep5 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including gonad; hatching gland; nervous system; polster; and trigeminal placode. Orthologous to human REEP5 (receptor accessory protein 5).

NR:

description
receptor expression-enhancing protein 5

GO: NA

KEGG:

id description
K17279 REEP5_6; receptor expression-enhancing protein 5/6

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001165180.1 True 1007 mRNA 0.43 5 9762915 9775557

Neighbor

gene id symbol gene type direction distance location
LOC110522838 NA coding downstream 5930 9755287 ~ 9756985 (-)
LOC118964744 NA coding downstream 138176 9623770 ~ 9624739 (-)
pam pam coding downstream 152365 9454461 ~ 9610550 (-)
LOC118964558 NA coding downstream 278106 9483124 ~ 9484809 (-)
ppip5k2 ppip5k2 coding downstream 312713 9379999 ~ 9450202 (-)
zgc:114200 LOC106571615 coding upstream 82010 9857567 ~ 9869211 (-)
tpm2 LOC106571564 coding upstream 103692 9879249 ~ 9911220 (-)
tln1 LOC100380665 coding upstream 136455 9912012 ~ 10059149 (-)
hmgcs1 LOC106571543 coding upstream 293320 10068877 ~ 10083381 (-)
map3k1 map3k1 coding upstream 351711 10127268 ~ 10180089 (-)
G366019 NA non-coding downstream 40002 9721692 ~ 9722913 (-)
G365980 NA non-coding downstream 69565 9693128 ~ 9693350 (-)
G365972 NA non-coding downstream 92747 9669609 ~ 9670168 (-)
G365923 NA non-coding downstream 184087 9578552 ~ 9578828 (-)
G366077 NA non-coding upstream 35367 9810924 ~ 9811502 (-)
G366097 NA non-coding upstream 73902 9849459 ~ 9849785 (-)
G366107 NA non-coding upstream 94861 9870418 ~ 9870643 (-)
G366123 NA non-coding upstream 142378 9917935 ~ 9918310 (-)
G366124 NA non-coding upstream 143285 9918842 ~ 9920142 (-)
G365752 NA other downstream 572817 9189669 ~ 9190098 (-)
G364754 NA other downstream 712207 9047542 ~ 9099000 (-)
G364322 NA other downstream 1458732 8303267 ~ 8304183 (-)
LOC110524941 LOC106572051 other downstream 3036935 6562531 ~ 6726634 (-)
G363470 LOC106572095 other downstream 3208200 6543675 ~ 6554715 (-)
G368612 ctxn3 other upstream 2358495 12134052 ~ 12136790 (-)
G368921 NA other upstream 2930009 12705566 ~ 12706092 (-)
G370333 NA other upstream 4431633 14207190 ~ 14208705 (-)
G370635 NA other upstream 4651781 14427338 ~ 14428591 (-)
LOC110524957 LOC106569957 other upstream 5217571 14988147 ~ 14995197 (-)

Expression


Co-expression Network