ca9 (LOC106571618)


Basic Information

Item Value
gene id ca9
gene name LOC106571618
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9810724 ~ 9834173 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976728.1
gtgcacaagtgtgtgtgtctgaccgaCTGTGCCTGTGTGTGGGTCTAGTCcagcagaaagagagggaggtgggggagaacAGGGGATGTACCAGGCACCTTGAGCAGTTCCTAGGCTCCTGATTGGTGCCTGGGCTGTCCTCTGAGTTGCCTTTAAAAAGCCCAGCCCAGATGTCCTGGCCCTGGATCCAGTAacggtgaaggagaggagacacaggtCAATGAGTGAAGAGAGAGTATGAAGACTGAAGCTGGGCATATTGAAGACAACTTTACTCCTCTTACCTTCTTGCTAAGTGTGCTTTGTGGAAACGTGCTCTGTTGAAACGTGCTCTGTTGCCTAGCTGAACATTTCTCTTCTCAGGACAAAATGACTACTGAGTGTCCGGTTGATAACTAGCTGGGTGCTGTCTCACTAAAGACAGTTTGACTGAACACAGACGGACAGTAGACTTCCTTACATAGTCTATCTGCAGActacctgagagacagacagtagacttcATTACATAGTCTAACTGCAGACTacctaacagacagacagtaaactTCATGACATAGTTTAACTGTCGACTGAATACCTGACAGACCATTTTCAGAGAACTGCCACAGTGCTCATTTGACACAGGAGATCCTAACAATACCTTGACCAGATGATTCTCAAGAtcttcctcaccctcctcttcctccatggtTTGGTGCTAAAtgcatcctcctcttcctcatcctccgaAGAGGAGGATGGCGGGAGCAGTGAGAAGGACAGCGGGGAGCATCATCCTAAAGGTGTCCCTCATGGTGGACACTGGGGCTACGAAGATCAAGCTGCCTGGTCCTCTGAGTTCTCACACTGCAGTGGAAAATCCCAGTCTCCCATTGACATTGATACCAGGAGAGCCCTCTATGACCGCAGCCTGCCACCCATAACTCTGGAGGACTATGATCTGACAGACAGCTCAGCATTGACACTGTTGAACAACGGCCATACCTtgcaGCTGGTCCTGCCCAACACCATGCGCATCACCAGTGGGTTTGACAACGAGTTCCGGGCCGCCCAACTGCATTTCCACTGGGGGACCAAAGAGGTGCCAGGATCTGAACACACCATAGATAACGTCCACTTCCCTGCAGAGATCCACATAGTTCATTACAACTCTAAATATGCAAATCTGTCCGAGGCAGCCAGCAAATCAGATGGCCTGGCTGTATTAGGGGGCTTCATCGGGATTGGTCTTCATGAGAATGACAACTATGAAAAGATCCTGTCTGCGCTCGCTGATGTCAGCATCGAAGAGTCTAACACTGAGATCCCTGCCTTCAATGTCCGTCATCTTTTGCCAAACAAGCTGGAGCGCTTCTACAGATATAATGGCTCCCTTACCACTCCTCCCTGCTTCCAAACAGTCAACTGGACAATGTTCAATGATACCATCACAGTGTCCAGGAGGCAGTTGGCTGCTCTGGAGGACACACTGAAAGCAGGCCAACACCAGCACCTGACCAAGAATTTCAGAGCACCTCAGCTTCTACATGGGAGACACGTCCTTGCCTCGTTCACAGACACTCCCACCATAGTCGTTGCAGGACATCCAAGTATCTCTATCAACACCTTGTCGGAGACTGATGCCTCTAACAGTGAAGGGCCATCAACTGGGCCATCTGAGGTCCTAGCAAGAGGAGATATCTTGGCCATAGCCTTCGGAGCTCTCTTTGCCGTCACTTTGCTGCTATTCACGCTCTATGCATACCAACAGCGTAAAAAATACTCTAGGTAGTATCAAAAAGGACTCCAGGCAGAACGTTATCTACAAACCAGCAACTAAAGAAGAGGCATAGATGTCACTGGAAAGGAGTCTTATTCAGATTTTATATTCAAACTATTTTCAATAGGAATTAAAGAGATTATCCAGTACTTTTGTAGACTTTTTTAGCCTAGAACTAGGTACTTTTGTagactttttagccagtagttctgaaagtagctctcacaagccaaaagtggtccctggAAATTGCATACTATATCAGATTGTGTGCAGATACTGTATGAGCAGCACGtcatcgctctctcgctcgctctacTGTGGCGCATGATGtgcctcttgctagctgtcactatTATGACAAGTGGTTGAAGCTCATTAGTTGAAATCAAACTGGAAAATGGAGGGAAAATGGACAAGTACAGCTTCCCGAAAAACAGTCTCTTTCAAGCTAGTGATTTCATGGCTAATTACAGTAAGACAGTAATTCTGATAATAGATTATTCATGTATGAActgcacattgacacatccagcccaaagtggGATGTTTAAAAAATACTTATTCGTTGCCAATGTTTCGGAGGCGGTGTCTTTAAAAGAGTTATGATCGAGAATTCATATTGCTCAAACCAAGTTTAACATTTGCTCAGAATGATTGTTTTCGTCTTTGTTACTAATGCAAAGTGGTTTAAGTATGTAATAcgagtcagtggaggctgctgggtggaggacggctcataataataccTGGAATggcgcgaatggaatggcatcaaacacatggaaaccgtggaaaccatgtgtttgatgttgttgatcACTTTCCACCTATTCTGCTCCAGCCGTTACTACgtgcctgtcctccccaatgaaggtgccaccaacctcctgtgatgtgtgTATATGGTACGTGTAGAAGAACAGCTGTAGTTACCACCTGAGTAAGAATGTATACAATGTGTTCTATTTAATTGTGGTGGCAAAATGATAAATGTTCATGAACTTCAATACAATTGACTTACTGTCGAAGAAAGTCAAATCACTTTTTCCCAGGGTGTTCACTTCGTTACAAGTACTAGACCTGCAGATAAAAGTGTTATGCTGTATCGTGTGTGTTGGATATCATGCAGGAAGTGTTTTATATGAGTGttgtattgttattactataTATCCTCAAATGTATGGACACTTGTCACTAAAACCGTTAAGTTGTTTTGTAGTTTACctctcaacctctccacaatggtgTATACTGATGTGCAATTGGACCTTGAAATGTACAataaatgtgttatattcttaTAAAGTCTGTCTCAT
>XM_036976726.1
tgcacaagtgtgtgtgtctgaccgaCTGTGCCTGTGTGTGGGTCTAGTCcagcagaaagagagggaggtgggggagaacAGGGGATGTACCAGGCACCTTGAGCAGTTCCTAGGCTCCTGATTGGTGCCTGGGCTGTCCTCTGAGTTGCCTTTAAAAAGCCCAGCCCAGATGTCCTGGCCCTGGATCCAGTAacggtgaaggagaggagacacaggtCAATGAGTGAAGAGAGAGTATGAAGACTGAAGCTGGGCATATTGAAGACAACTTTACTCCTCTTACCTTCTTGCTAAGTGTGCTTTGTGGAAACGTGCTCTGTTGAAACGTGCTCTGTTGCCTAGCTGAACATTTCTCTTCTCAGGACAAAATGACTACTGAGTGTCCGGTTGATAACTAGCTGGGTGCTGTCTCACTAAAGACAGTTTGACTGAACACAGACGGACAGTAGACTTCCTTACATAGTCTATCTGCAGActacctgagagacagacagtagacttcATTACATAGTCTAACTGCAGACTacctaacagacagacagtaaactTCATGACATAGTTTAACTGTCGACTGAATACCTGACAGACCATTTTCAGAGAACTGCCACAGTGCTCATTTGACACAGGAGATCCTAACAATACCTTGACCAGATGATTCTCAAGAtcttcctcaccctcctcttcctccatggtTTGGTGCTAAAtgcatcctcctcttcctcatcctccgaAGAGGAGGATGGCGGGAGCAGTGAGAAGGACAGCGGGGAGCATCATCCTAAAGGTGTCCCTCATGGTGGACACTGGGGCTACGAAGATCAAGCTGCCTGGTCCTCTGAGTTCTCACACTGCAGTGGAAAATCCCAGTCTCCCATTGACATTGATACCAGGAGAGCCCTCTATGACCGCAGCCTGCCACCCATAACTCTGGAGGACTATGATCTGACAGACAGCTCAGCATTGACACTGTTGAACAACGGCCATACCTtgcaGCTGGTCCTGCCCAACACCATGCGCATCACCAGTGGGTTTGACAACGAGTTCCGGGCCGCCCAACTGCATTTCCACTGGGGGACCAAAGAGGTGCCAGGATCTGAACACACCATAGATAACGTCCACTTCCCTGCAGAGATCCACATAGTTCATTACAACTCTAAATATGCAAATCTGTCCGAGGCAGCCAGCAAATCAGATGGCCTGGCTGTATTAGGGGGCTTCATCGGGATTGGTCTTCATGAGAATGACAACTATGAAAAGATCCTGTCTGCGCTCGCTGATGTCAGCATCGAAGAGTCTAACACTGAGATCCCTGCCTTCAATGTCCGTCATCTTTTGCCAAACAAGCTGGAGCGCTTCTACAGATATAATGGCTCCCTTACCACTCCTCCCTGCTTCCAAACAGTCAACTGGACAATGTTCAATGATACCATCACAGTGTCCAGGAGGCAGTTGGCTGCTCTGGAGGACACACTGAAAGCAGGCCAACACCAGCACCTGACCAAGAATTTCAGAGCACCTCAGCTTCTACATGGGAGACACGTCCTTGCCTCGTTCACAGACACTCCCACCATAGTCGTTGCAGGACATCCAAGTATCTCTATCAACACCTTGTCGGAGACTGATGCCTCTAACAGTGAAGGGCCATCAACTGGGCCATCTGAGGTCCTAGCAAGAGGAGATATCTTGGCCATAGCCTTCGGAGCTCTCTTTGCCGTCACTTTGCTGCTATTCACGCTCTATGCATACCAACAGCGTAAAAAATACTCTAGTATCAAAAAGGACTCCAGGCAGAACGTTATCTACAAACCAGCAACTAAAGAAGAGGCATAGATGTCACTGGAAAGGAGTCTTATTCAGATTTTATATTCAAACTATTTTCAATAGGAATTAAAGAGATTATCCAGTACTTTTGTAGACTTTTTTAGCCTAGAACTAGGTACTTTTGTagactttttagccagtagttctgaaagtagctctcacaagccaaaagtggtccctggAAATTGCATACTATATCAGATTGTGTGCAGATACTGTATGAGCAGCACGtcatcgctctctcgctcgctctacTGTGGCGCATGATGtgcctcttgctagctgtcactatTATGACAAGTGGTTGAAGCTCATTAGTTGAAATCAAACTGGAAAATGGAGGGAAAATGGACAAGTACAGCTTCCCGAAAAACAGTCTCTTTCAAGCTAGTGATTTCATGGCTAATTACAGTAAGACAGTAATTCTGATAATAGATTATTCATGTATGAActgcacattgacacatccagcccaaagtggGATGTTTAAAAAATACTTATTCGTTGCCAATGTTTCGGAGGCGGTGTCTTTAAAAGAGTTATGATCGAGAATTCATATTGCTCAAACCAAGTTTAACATTTGCTCAGAATGATTGTTTTCGTCTTTGTTACTAATGCAAAGTGGTTTAAGTATGTAATAcgagtcagtggaggctgctgggtggaggacggctcataataataccTGGAATggcgcgaatggaatggcatcaaacacatggaaaccgtggaaaccatgtgtttgatgttgttgatcACTTTCCACCTATTCTGCTCCAGCCGTTACTACgtgcctgtcctccccaatgaaggtgccaccaacctcctgtgatgtgtgTATATGGTACGTGTAGAAGAACAGCTGTAGTTACCACCTGAGTAAGAATGTATACAATGTGTTCTATTTAATTGTGGTGGCAAAATGATAAATGTTCATGAACTTCAATACAATTGACTTACTGTCGAAGAAAGTCAAATCACTTTTTCCCAGGGTGTTCACTTCGTTACAAGTACTAGACCTGCAGATAAAAGTGTTATGCTGTATCGTGTGTGTTGGATATCATGCAGGAAGTGTTTTATATGAGTGttgtattgttattactataTATCCTCAAATGTATGGACACTTGTCACTAAAACCGTTAAGTTGTTTTGTAGTTTACctctcaacctctccacaatggtgTATACTGATGTGCAATTGGACCTTGAAATGTACAataaatgtgttatattcttaTAAAGTCTGTCTC
>TU415129
AATGATACCATCATAGTGTCCAGGAGGCAGGTCAGTAATGATACCATCACAGTGTCCAGGAGGCAGGTCAGTAATGATACCATCACAGTGTCCAGGAGGCAGGTCAGTAATGATACCATCACAGTGTCCAGGAGGCAGGTTAGAATGATACCATCATAGTGTCCAGGAGGCAGGTCAGTAATGATACCATCACAGTGTCCAGGAGGCAGGTCAGTAATGATACCATCATAGCCTACAGGAGGCAGGTTAGTAATGATACCATCATAGTATCCAGGAGGCCGGTCAGTAATGATACCATCACAGTGTCCAGGAGGCAGGTTAGTTATGATACCATCATAGTGTCCAGGTGGCAGGTCAGTAATGATACCATCACAGTATCCAGGAGGCAGGTCAGTAATGATACCATCACAGTGTCCAGGAGGCAGGTCAGTAATGATACCATCACAGTGTCCAGGAGGCAGGTCAGTAATGATACCATCACAGTATACAGGATGCAGGTCAGTAATGATACCATTGTGTACAGGAGGCAGGTCAGTGATGATACCAGGGTTTCCAGGAGGCAGGTCGGTCACCAACCCAGGAGATTGATTTACAGATTGACTTGCATCATGAATACCTCCTTGAGAGTACAAGAGATCCACTACTACTTGTACTGTCTGTATTTTCATGTCTAAAAATAGATCTTCAAACAAGATAAAAATAACATTTAGACAGAGCACTACTAGATACTGTTTTAATTTGTTCTAGACATTTATTAAAGTCAATTATGTGGTAGTTTGAAAACTGTGTGGGTCATGTGGGCTGAACATAACAGTAGAATCTATCTTCAATCTACAACCATGTTGATGGTGCCCATGTTGTGTTCTCCAGTTGGCTGCTCTGGAGGACACACTGAAAGCAGGCCAACACCAGCACCTGACCAAGAATTTCAGAGCACCTCAGCTTCTACATGGGAGACACGTCCTTGCCTCGTTCACAGACACTCCCACCATAGTCGTTGCAGGACATCCAAGTATCTCTATCAACACCTTGTCGGAGACTGATGCCTCTAACAGTGAAGGGCCATCAACTGGGCCATCTGAGGTCCTAGCAAGAGGAGATATCTTGGCCATAGCCTTCGGAGCTCTCTTTGCCGTCACTTTGCTGCTATTCACGCTCTATGCATACCAACAGCGTAAAAAATACTCTAGTATCAAAAAGGACTCCAGGCAGAACGTTATCTACAAACCAGCAACTAAAGAAGAGGCATAGATGTCACTGGAAAGGAGTCTTATTCAGATTTTATATTCAAACTATTTTCAATAGGAATTAAAGAGATTATCCAGTACTTTTGTAGACTTTTTTAGCCTAGAACTAGGTACTTTTGTagactttttagccagtagttctgaaagtagctctcacaagccaaaagtggtccctggAAATTGCATACTATATCAGATTGTGTGCAGATACTGTATGAGCAGCACGtcatcgctctctcgctcgctctacTGTGGCGCATGATGtgcctcttgctagctgtcactatTATGACAAGTGGTTGAAGCTCATTAGTTGAAATCAAACTGGAAAATGGAGGGAAAATGGACAAGTACAGCTTCCCGAAAAACAGTCTCTTTCAAGCTAGTGATTTCATGGCTAATTACAGTAAGACAGTAATTCTGATAATAGATTATTCATGTATGAActgcacattgacacatccagcccaaagtggGATGTTTAAAAAATACTTATTCGTTGCCAATGTTTCGGAGGCGGTGTCTTTAAAAGAGTTATGATCGAGAATTCATATTGCTCAAACCAAGTTTAACATTTGCTCAGAATGATTGTTTTCGTCTTTGTTACTAATGCAAAGTGGTTTAAGTATGTAATAcgagtcagtggaggctgctgggtggaggacggctcataataataccTGGAATggcgcgaatggaatggcatcaaacacatggaaaccgtggaaaccatgtgtttgatgttgttgatcACTTTCCACCTATTCTGCTCCAGCCGTTACTACgtgcctgtcctccccaatgaaggtgccaccaacctcctgtgatgtgtgTATATGGTACGTGTAGAAGAACAGCTGTAGTTACCACCTGAGTAAGAATGTATACAATGTGTTCTATTTAATTGTGGTGGCAAAATGATAAATGTTCATGAACTTCAATACAATTGACTTACTGTCGAAGAAAGTCAAATCACTTTTTCCCAGGGTGTTCACTTCGTTACAAGTACTAGACCTGCAGATAAAAGTGTTATGCTGTATCGTGTGTGTTGGATATCATGCAGGAAGTGTTTTATATGAGTGttgtattgttattactataTATCCTCAAATGTATGGACACTTGTCACTAAAACCGTTAAGTTGTTTTGTAGTTTACctctcaacctctccacaatggtgTATACTGATGTGCAATTGGACCTTGAAATGTACAataaat

Function

NR:

description
carbonic anhydrase 9-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976728.1 False 3081 mRNA 0.45 12 9810724 9834173
XM_036976726.1 False 3074 mRNA 0.45 12 9810725 9834171
TU415129 True 2468 lncRNA 0.42 5 9828490 9834144

Neighbor

gene id symbol gene type direction distance location
dcp2 dcp2 coding upstream 12901 9782455 ~ 9797823 (+)
chd1 chd1 coding upstream 79591 9694048 ~ 9731133 (+)
LOC118964779 NA coding upstream 85159 9725438 ~ 9725565 (+)
LOC118964774 NA coding upstream 98755 9711751 ~ 9711969 (+)
LOC110522837 tmem217 coding upstream 118728 9690509 ~ 9691996 (+)
LOC110523166 LOC106571594 coding downstream 36454 9870627 ~ 9874229 (+)
LOC110523169 NA coding downstream 274699 10108872 ~ 10124536 (+)
ankrd55 ankrd55 coding downstream 428532 10262705 ~ 10281350 (+)
gp130 gp130 coding downstream 448827 10283000 ~ 10300246 (+)
slc38a9 slc38a9 coding downstream 507059 10341232 ~ 10366701 (+)
G365175 NA non-coding upstream 7889 9802618 ~ 9802835 (+)
G365077 reep5 non-coding upstream 35147 9774865 ~ 9775577 (+)
G365093 NA non-coding upstream 123762 9635188 ~ 9686962 (+)
G365109 NA non-coding upstream 129155 9678974 ~ 9681569 (+)
G364942 pam non-coding upstream 295585 9511683 ~ 9515139 (+)
G365190 NA non-coding downstream 6402 9840575 ~ 9840959 (+)
G365194 NA non-coding downstream 12019 9846192 ~ 9846403 (+)
G365195 NA non-coding downstream 12701 9846874 ~ 9847079 (+)
G365196 NA non-coding downstream 13907 9848080 ~ 9848292 (+)
G365202 NA non-coding downstream 16970 9851143 ~ 9851352 (+)
G364850 NA other upstream 581493 9228838 ~ 9229231 (+)
cdc42se2 cdc42se2 other upstream 964608 8775134 ~ 8849107 (+)
G362662 NA other upstream 1891159 7918922 ~ 7919565 (+)
G362554 NA other upstream 2118210 7690440 ~ 7692514 (+)
G362297 zbtb43 other upstream 2620905 7185926 ~ 7189819 (+)
G365197 NA other downstream 14530 9848703 ~ 9849154 (+)
G366748 NA other downstream 1142509 10976682 ~ 10977152 (+)
G366973 NA other downstream 1591469 11425642 ~ 11428710 (+)
G367684 NA other downstream 2044156 11878329 ~ 11880035 (+)
G368440 NA other downstream 3274523 13108696 ~ 13109134 (+)

Expression


Co-expression Network