zgc:114200 (LOC106571615)


Basic Information

Item Value
gene id zgc:114200
gene name LOC106571615
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9857567 ~ 9869211 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601607.2
GTCAAACACGGAAGTACAAAATTCGACAAACAAAAAGCTTAGCTAGGAAATGAGAGCATGGAGGGATCTAAATATTAAAATATCGATCAATAAAATCGCTGAACGAAAAGGAAATATAGCTACTTAAAGATTTATGCTAAAGAAAATAATTAAATTATTGTAAATGTATTGCTAGATAGCAATGGATATCGGTATGAAGTTTATCTTCTGCACTGATAGCTAACGTTAATTTTAGCTAGAGAAACATAGCCCGCTATTTTGAAACAGACTTGCTTTTTCAATTTCTAGAGACTAACTAGCAAACCAGTGGGCGTTTATCTTATGATAATTATCATTTCACCTCGTTATTAATCCTCTAACGTTAGcgtgctgatttttttttttttttaacgggCTAGCCAAGAAGAACAAGTTTAGATAGTGGCAATGACTGCTGCAGTGTTTTTTGGGTGTGCGTTCATTGCATTTGGGCCAGCGTTTTCCCTATTTATTTTCACTATCGCCAAAGACCCATTGCGAGTCATCATTCTAATTGCAGGggcCTTCTTCTGGCTGGTGTCCTTACTGCTGTCCTCTCTGGTGTGGTTCATAGCCACGAAGGCCACCAATGCCCAGGACCTGACCCTGCAGAAAAACCTGCTCATATTTGGCAGTATTTTCTCAGTCATACTGCAGGAGGTGTTCCGCTTTGCATACTACAGGCTGCTCAGGAAGGCAAATGAAGGTCTGGCAGCCATCAGTGAAGAAGACGGCCCCCCCCTTTCAGTCCGGGAAATGGCCTATGTGGCTGGACTGGGCTTTGGCATCATGAGCGGAGCCTTCTCCATGATCaacactctctctgactctctgggCCCAGGGACAGTGGGCATGTTTGGAGACTCCCAGTACTACTTCATCACCTcagCCCTGATGACCCTGGCGCTGACGATGCTCCACACCTTCTGGGGGGTGGTGTTCTTTGAGGGCTGTGAGAGGAAGAGATGGTGGGTGATCGCTGTGGTGCTCTGTGTCCACCTGATGGTCTTCAGCCTGTCTCTGTTGAACCCGTTCTACGTGGGCAGCATTCTCCCGGTCTACGCCATCATGCTGCTGATGGCCGTCTGGGCCTTCTTCTCCTCCGGTGGCTCCCTGCACAACATCACTCTTCTCTGGACGTGTAGGAAAAGTAATACGGAGACGTCGTCATAATTCACATTCCATGTTGATCTCTGAGGTCGAAGGGCAATAGGAGCTTCTGTCGCTGCAGTGCTGTGTACAAACCAAAGCAGCCAATCAAGAGACGACACAGTCTCCACATCAACCAATCTCCACATAATATGGATGGGCTGAATCAGAGCCCAGAAATCAGCACTTCACTGACCAATAGAGCTGACCAAGGGAAATCCttcatactgtatatagcctgaatgacactagtttacacacacttaggcaTGTGTAAGCTTTTTTTCAATGCAAGGaaacaacctttttttttttcGTTCTTTGTCTCTTCGCAGATTTGGCTTTTGTATGGACTTTTAATCAATCCACTCCCTTGCGTCAATTATTGATCTTTGGTTTACtgaattattataataattttttaaagaatgaTCATTTGTTAGTTAATGTAATGTGAAGGGCAGAGCTGCACAAATCGaatgttatttgtcatgtgccgaatacaacagtgaaatgctgacttacaagcccttaaccaacaatccaGTTTGAagaaaaataagtttaaaaaaaaaatagctaagtaaaacaataagaaataaaagtaacaaataataaaagatcagcagtaaaaataacagtcgcaaggctatatacagggggtaccgttacagagtcaatgtgctggggcaccggttagtcaaggtaatctGTAcaggtaggtagagttaaagtgcaACAGACtgttggctctggtcaaatgaagaTTCTTCACCAGGACTTTTTTTGTACCCTCAACCTCAtttcaatgttttgttttttttaaattaaaattacGAGCCACCAtttaaattacttttttttttatatatatatatatatatatatatatatatatatatataattatgtaATCAATGGACAATGTTAACTTTTTTTATTTGGTCAATGACAGTCttacaaatcagtctgacagtatTTTTGACTGTATTTTAATCTGAAAACCATATGGTTTGAATTGACTGAAATGTATTAGGAAATGCAGAAGATCATCAGGCAATAATGTATGATGATCTGTGTAGAAAAGAACCTTGGAAGAAAACTGATTTTAAGCCAGGTTCTATGAACCAATCACCAATTATCGATCGTGACTCCCATTTTCAAATCCCCTAGTTTGGAAAACCCtattatacacacatacaacGGTATGCAACATCACTATATTATGCATTATCTGCCCTGGCAGACACTGCCATGTGTAGGACACATGtacacatcacaggaggttggtggcaccttatttggggaggacgggctaGTGGTAATGGCTAACGCTGAATCAGTGGAATGTTTTCAGATACATCAAACTAAatgtttgatgccgttccatttaGCTCCATTCCAGACaatatgagccatcctcccctcagcagcccccaCTGGTACATATTATGTAAGgtatttttatgtttttattatgcAAATAAAATGCTAATGTTCTTGA

Function

NR:

description
gamma-secretase subunit Aph-1b-like

GO:

id name namespace
GO:0016485 protein processing biological_process
GO:0043085 positive regulation of catalytic activity biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06172 APH1; gamma-secretase subunit APH-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601607.2 True 2671 mRNA 0.41 7 9857567 9869211

Neighbor

gene id symbol gene type direction distance location
reep5 reep5 coding downstream 82010 9762915 ~ 9775557 (-)
LOC110522838 NA coding downstream 100582 9755287 ~ 9756985 (-)
LOC118964744 NA coding downstream 232828 9623770 ~ 9624739 (-)
pam pam coding downstream 247017 9454461 ~ 9610550 (-)
LOC118964558 NA coding downstream 372758 9483124 ~ 9484809 (-)
tpm2 LOC106571564 coding upstream 10038 9879249 ~ 9911220 (-)
tln1 LOC100380665 coding upstream 42801 9912012 ~ 10059149 (-)
hmgcs1 LOC106571543 coding upstream 199666 10068877 ~ 10083381 (-)
map3k1 map3k1 coding upstream 258057 10127268 ~ 10180089 (-)
LOC110523172 il31r coding upstream 434430 10303641 ~ 10318088 (-)
G366097 NA non-coding downstream 7782 9849459 ~ 9849785 (-)
G366077 NA non-coding downstream 46065 9810924 ~ 9811502 (-)
G366019 NA non-coding downstream 134654 9721692 ~ 9722913 (-)
G365980 NA non-coding downstream 164217 9693128 ~ 9693350 (-)
G366107 NA non-coding upstream 1207 9870418 ~ 9870643 (-)
G366123 NA non-coding upstream 48724 9917935 ~ 9918310 (-)
G366124 NA non-coding upstream 49631 9918842 ~ 9920142 (-)
G366140 NA non-coding upstream 101751 9970962 ~ 9971551 (-)
G366199 NA non-coding upstream 234799 10104010 ~ 10156606 (-)
G365752 NA other downstream 667469 9189669 ~ 9190098 (-)
G364754 NA other downstream 806859 9047542 ~ 9099000 (-)
G364322 NA other downstream 1553384 8303267 ~ 8304183 (-)
LOC110524941 LOC106572051 other downstream 3131587 6562531 ~ 6726634 (-)
G363470 LOC106572095 other downstream 3302852 6543675 ~ 6554715 (-)
G368612 ctxn3 other upstream 2264841 12134052 ~ 12136790 (-)
G368921 NA other upstream 2836355 12705566 ~ 12706092 (-)
G370333 NA other upstream 4337979 14207190 ~ 14208705 (-)
G370635 NA other upstream 4558127 14427338 ~ 14428591 (-)
LOC110524957 LOC106569957 other upstream 5123917 14988147 ~ 14995197 (-)

Expression


Co-expression Network