sh2d4a (sh2d4a)


Basic Information

Item Value
gene id sh2d4a
gene name sh2d4a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 10375111 ~ 10395552 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976754.1
GATGCCCGAGTTTTCgaattggaattccgagttggataacATTTCAAAACTacttttcccagtcggagctagtttttGGCCGAGttaccagttgtcttgaacacactgaagtcagagatttccgagtttccagttgttttgaacgctgcAGTAGTCTACCTGCAATAACAGTGGGGTGGGATGGACAAATATTAACATTTGCATAAAGGAGTGTTTTTTTCTTTCGAAACTTGTTGGCACTTTTGTCCTTCATTTAGGAAATAAGTAACCTACGGAAAACGTTACCGGCAACGGAACATTTGTCATTTTCGTTAAACCTGCGAAATATCGCTAAATAGTAGGCTAcaggaaaaatatatacatttgcagGCGTGACCATCGGCCCATAGTGTGACTCATGCCGAACATTCCCATGGGAGATTTtgtaaacaagttattttttaagGCGTCCACGTCCCACGTATCGGCTGTGATTTCCACTTTCAGGATATATACCCTAGCGTGGGAATTCAGAGAGTGAATACAGGCATGGACCAGCCTTCATTAGATGATTAACAACTCCCTATTTCAACGGAGAAACTCCCGACATCCAACCAACACCAGCTGTTCTCTGCTAATACTAAAGTTCTCTCTGGATACTGTTGGTGAGACATTGCAGCTCTACGATGCTCCGGCAGATTTTGACGGACATGTTCATATCACCCGAGCTCCTGGCTGAGCTGAGCGAGGAGCAGAAGCAGGTGTTGTTCATTAAGATGCGTGAGGAACAGGTCCGACGCTGGAAGGACAGAGAGGCTCGACTAGAGAAGGAGGATGCCACTCTGACGAAACCCAAGAAAGCCTCTGTGAAGAGTGTACAGTGGCTGGCAGGGATGGATAGTGACGTATGGGTGTGGGTGATGGGGGACCACCCTGCCGACCAGTCCTACGAGCAGATCTGTGATGACATCCTAGCCCAGAGGGCAGCCTGCCAGGcccagagagaggctgaggagctCAGggtgAAGAAGGAGGCGGAGCTGGTCAAGAGGTTCTCCAGTGTGTTGATGGACTCAGAGCTGCAGTTGTGGAAGGAGGAGGTGGAGCGACAGGAGGTGGAGCGACAGGAGGTGGAGCGACAGGAGGTGGAGCGACGGGCTGCAGCTCAGGAGCAGAGCCAACAGGAGAAAAGAgaggcggaggagaggaggagggctgagGAAGAGGTGCGAAGAGTGGAGCAGAAGAGAAAGCAGGAGATCTACATGGACTTGAgggaggtcagagaggagagagatgaccAACACTGGCAAGATtcatTGCGGAAGTCCAAAGCGGCCGACCTGCGGCGCCGGTCCATTGCCAAGCAGACCCGTGATGACCACCGGCGGCAATCGGTCAAGGCTCTGGAGCGAGGCCGTGTGGCTGCTGTCACCAAGGCATTCGGCGGGGACAGACCTGCCCTCCCacccaaacccaaacccaggAACCTTACTGTGACCAGTGACACCCTTAACCCGAAGCAAGGGGTGCGACGCACACTGTCCACCTCCAGCAGGGAGCACATTATTAGATGGTTCCAGGAGGAACAGCTGCCTTACCGAGCGGGTTTCCAGAAGGACCAGAGTCGCATAGCGTCTTGGTTCCATGGCATCATTTCGCGGCAGGAAGCCGAGGACTTACTGAGCGAGGGGGAACCCGGGCACTTTCTGGTGAGGGTCAGCGAAAGGATTCTGGGATACGTCCTGTCTTATCGATGCAAAGAGGAGTTTAAACACTTCCTCGTTGACGCGACAGAGGGCTGCTACATGCTGCTGGGACACCAGATCAAATTCACCTCGTTGGCAGAGCTTGTGGAGTTCCATGAGGGGGAGCCAATCACCATGTCAGGAGGGGAGCAGCTGCTCCAGCCATGTGGCCAGAGGCCTAGTGGTGTGGACTATGCAGACCTCTTTACCTGAAACCCTGCAAGGGTCATGTCCCAATAGTCTAAAACAGACTCCTTTCCTAATCTCCTTCCTTCATGACCACTGGTCAGAAAGGTCTCAACAGGTGAATGATTGAGACCAAGTGGTTTCACCTGTCAGTAGCTTTTTAAAGTCTATGGACAGTAGTCAAGGTGGGAAAGAGACAAGGAAGGAAGCCACTTTAGAATATTAAGACGCAACCTTCAGGCATGAGACGGATCTCTGTGGAACAAAGTGTTTCTACGGGAGACTCACACTATGGTTAGATAACCAAcatatcttctttttttttttctcaggaGGATTTACAGGATGTTCAGATATAAGTGTAATGTTTAGAACCGATTACGATGTCTCATGTAGACTAGAACAATAATagaataacctttttttttttatcaaggagGAACTTCGGTTAACTTCATACTAGGAAATCGTGTCCGCTCAagtaattctatttctatctgcaatgttcaGAAAGTTTCACATCCGTGTTGACTCTTATCCCCCCCAGTGCCAACTGTCAAGCCACGGACTTTCTATTACATCTAGACCTCCTCTATCCCCCGTGTACAATATGAACAGGCCTGTAATATCATTTCTGCTAATGTATTCATAGACAAGTACCAGGTGGCCAGTATTGTAAAGGCACATTTGACAGTGACAACAAACAACAGTCGCCTGTTTGGGGACGAATCACTTGAATAAATTCTGCACTTTGTATTGCAA
>XM_036976753.1
AAAGATGCCCGAGTTTTCgaattggaattccgagttggataacATTTCAAAACTacttttcccagtcggagctagtttttGGCCGAGttaccagttgtcttgaacacactgaagtcagagatttccgagtttccagttgttttgaacgctgcAGTAGTCTACCTGCAATAACAGTGGGGTGGGATGGACAAATATTAACATTTGCATAAAGGAGTGTTTTTTTCTTTCGAAACTTGTTGGCACTTTTGTCCTTCATTTAGGAAATAAGTAACCTACGGAAAACGTTACCGGCAACGGAACATTTGTCATTTTCGTTAAACCTGCGAAATATCGCTAAATAGTAGGCTAcaggaaaaatatatacatttgcagGCGTGACCATCGGCCCATAGTGTGACTCATGCCGAACATTCCCATGGGAGATTTtgtaaacaagttattttttaagGCGTCCACGTCCCACGTATCGGCTGTGATTTCCACTTTCAGGATATATACCCTAGCGTGGGAATTCAGAGAGTGAATACAGGCATGGACCAGCCTTCATTAGATGATTAACAACTCCCTATTTCAACGGAGAAACTCCCGACATCCAACCAACACCAGCTGTTCTCTGCTAATACTAAAGTTCTCTCTGGATACTGTTGGTGAGACATTGCAGCTCTACGATGCTCCGGCAGATTTTGACGGACATGTTCATATCACCCGAGCTCCTGGCTGAGCTGAGCGAGGAGCAGAAGCAGGTGTTGTTCATTAAGATGCGTGAGGAACAGGTCCGACGCTGGAAGGACAGAGAGGCTCGACTAGAGAAGGAGGATGCCACTCTGACGAAACCCAAGAAAGCCTCTGTGAAGAGTGTACAGTGGCTGGCAGGGATGGATAGTGACGTATGGGTGTGGGTGATGGGGGACCACCCTGCCGACCAGTCCTACGAGCAGATCTGTGATGACATCCTAGCCCAGAGGGCAGCCTGCCAGGcccagagagaggctgaggagctCAGggtgAAGAAGGAGGCGGAGCTGGTCAAGAGGTTCTCCAGTGTGTTGATGGACTCAGAGCTGCAGTTGTGGAAGGAGGAGGTGGAGCGACAGGAGGTGGAGCGACAGGAGGTGGAGCGACAGGAGGTGGAGCGACGGGCTGCAGCTCAGGAGCAGAGCCAACAGGAGGTGGAGATTAAGAAAAGAgaggcggaggagaggaggagggctgagGAAGAGGTGCGAAGAGTGGAGCAGAAGAGAAAGCAGGAGATCTACATGGACTTGAgggaggtcagagaggagagagatgaccAACACTGGCAAGATtcatTGCGGAAGTCCAAAGCGGCCGACCTGCGGCGCCGGTCCATTGCCAAGCAGACCCGTGATGACCACCGGCGGCAATCGGTCAAGGCTCTGGAGCGAGGCCGTGTGGCTGCTGTCACCAAGGCATTCGGCGGGGACAGACCTGCCCTCCCacccaaacccaaacccaggAACCTTACTGTGACCAGTGACACCCTTAACCCGAAGCAAGGGGTGCGACGCACACTGTCCACCTCCAGCAGGGAGCACATTATTAGATGGTTCCAGGAGGAACAGCTGCCTTACCGAGCGGGTTTCCAGAAGGACCAGAGTCGCATAGCGTCTTGGTTCCATGGCATCATTTCGCGGCAGGAAGCCGAGGACTTACTGAGCGAGGGGGAACCCGGGCACTTTCTGGTGAGGGTCAGCGAAAGGATTCTGGGATACGTCCTGTCTTATCGATGCAAAGAGGAGTTTAAACACTTCCTCGTTGACGCGACAGAGGGCTGCTACATGCTGCTGGGACACCAGATCAAATTCACCTCGTTGGCAGAGCTTGTGGAGTTCCATGAGGGGGAGCCAATCACCATGTCAGGAGGGGAGCAGCTGCTCCAGCCATGTGGCCAGAGGCCTAGTGGTGTGGACTATGCAGACCTCTTTACCTGAAACCCTGCAAGGGTCATGTCCCAATAGTCTAAAACAGACTCCTTTCCTAATCTCCTTCCTTCATGACCACTGGTCAGAAAGGTCTCAACAGGTGAATGATTGAGACCAAGTGGTTTCACCTGTCAGTAGCTTTTTAAAGTCTATGGACAGTAGTCAAGGTGGGAAAGAGACAAGGAAGGAAGCCACTTTAGAATATTAAGACGCAACCTTCAGGCATGAGACGGATCTCTGTGGAACAAAGTGTTTCTACGGGAGACTCACACTATGGTTAGATAACCAAcatatcttctttttttttttctcaggaGGATTTACAGGATGTTCAGATATAAGTGTAATGTTTAGAACCGATTACGATGTCTCATGTAGACTAGAACAATAATagaataacctttttttttttatcaaggagGAACTTCGGTTAACTTCATACTAGGAAATCGTGTCCGCTCAagtaattctatttctatctgcaatgttcaGAAAGTTTCACATCCGTGTTGACTCTTATCCCCCCCAGTGCCAACTGTCAAGCCACGGACTTTCTATTACATCTAGACCTCCTCTATCCCCCGTGTACAATATGAACAGGCCTGTAATATCATTTCTGCTAATGTATTCATAGACAAGTACCAGGTGGCCAGTATTGTAAAGGCACATTTGACAGTGACAACAAACAACAGTCGCCTGTTTGGGGACGAATCACTTGAATAAATTCTGCACTTTGTATTGCAA

Function

symbol description
sh2d4a Predicted to be active in cytoplasm. Orthologous to human SH2D4A (SH2 domain containing 4A).

NR:

description
SH2 domain-containing protein 4A

GO: NA

KEGG:

id description
K17577 SH2D4A; SH2 domain-containing protein 4A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976754.1 False 2675 mRNA 0.49 9 10375111 10395549
XM_036976753.1 True 2690 mRNA 0.49 9 10375111 10395552

Neighbor

gene id symbol gene type direction distance location
ddx4 vas coding downstream 44677 10318236 ~ 10330434 (-)
LOC110523172 il31r coding downstream 57023 10303641 ~ 10318088 (-)
map3k1 map3k1 coding downstream 195022 10127268 ~ 10180089 (-)
hmgcs1 LOC106571543 coding downstream 291730 10068877 ~ 10083381 (-)
tln1 LOC100380665 coding downstream 315962 9912012 ~ 10059149 (-)
LOC118964559 NA coding upstream 73714 10469266 ~ 10475168 (-)
LOC110523178 c209a coding upstream 247305 10642857 ~ 10643948 (-)
cd209a cd209a coding upstream 267068 10662620 ~ 10663665 (-)
nrg1 nrg1 coding upstream 298008 10693560 ~ 10851760 (-)
wrn wrn coding upstream 476297 10871849 ~ 10907802 (-)
G366277 NA non-coding downstream 40689 10333768 ~ 10334422 (-)
G366302 NA non-coding downstream 79417 10295022 ~ 10295694 (-)
G366279 gp130 non-coding downstream 90473 10282935 ~ 10284638 (-)
G366199 NA non-coding downstream 218505 10104010 ~ 10156606 (-)
G366215 NA non-coding downstream 250647 10123523 ~ 10124464 (-)
G366314 NA non-coding upstream 4928 10400480 ~ 10420621 (-)
G366368 NA non-coding upstream 37089 10432641 ~ 10434070 (-)
G366472 NA non-coding upstream 178022 10573574 ~ 10575091 (-)
G366448 NA non-coding upstream 185776 10581328 ~ 10584712 (-)
G366531 NA non-coding upstream 260990 10656542 ~ 10661403 (-)
G365752 NA other downstream 1185013 9189669 ~ 9190098 (-)
G364754 NA other downstream 1324403 9047542 ~ 9099000 (-)
G364322 NA other downstream 2070928 8303267 ~ 8304183 (-)
LOC110524941 LOC106572051 other downstream 3649131 6562531 ~ 6726634 (-)
G363470 LOC106572095 other downstream 3820396 6543675 ~ 6554715 (-)
G368612 ctxn3 other upstream 1738500 12134052 ~ 12136790 (-)
G368921 NA other upstream 2310014 12705566 ~ 12706092 (-)
G370333 NA other upstream 3811638 14207190 ~ 14208705 (-)
G370635 NA other upstream 4031786 14427338 ~ 14428591 (-)
LOC110524957 LOC106569957 other upstream 4597576 14988147 ~ 14995197 (-)

Expression


Co-expression Network