LOC110523175 (LOC106571461)


Basic Information

Item Value
gene id LOC110523175
gene name LOC106571461
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 10402095 ~ 10420627 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601630.2
ggatccttgggacattcAAAGGCCAAAGTTGAATATGAAGCCACTGTCTGTCAACAGTATCTGTCAGCCGACTCCGCCCATTGAAAAGTTTAATACGCCATTAACATAGGAAGATCAGGGGGACTAAGGGTGCTGAAGAACTGAGTTCAGTAGCCTTCCTGATTGAGAGATCTCTCTGAGCAGCATGGTCTTAAAGAGACATTAGACGATATGGAGCTTGAGGGAGACCCTGAAGTCGTGAGTGGGagTGTCAAGGAGGAGAGAGTTGAGTCACCTGGTCTCAGCTGCCTGTCTATGAAGAGTAACAAGTCAATGTTTGAACCCATTcacttcagaggagaaaccatgccCCCGGATCTAAGggccagTTTGCTGACTGTACATCATTTCAGATGCCCTTTGTGTTCAGATGTGATGACAAACCCGGTCTCCATTCCCTGTGGACACAGTTACTGCAGGCAGTGTATCAGCACACACTGGGCCCAGCCCGGCCATGCAGGAAACTATGTGTGCCCCCAGTGCAATAAGAGATTCAGAGCCAAGCCTGTGCTCTACACTAACGCAGCCTTGGCCAAGGTGCTCCACGAGCTCCAGCAGGCAGGCTTCAGTCCTGCCCTCCCTGCTCTGGGCTACGCTGGGCCCGTGGATGTGGCATGTGATATATGCTCTGGCCAGAAGCTGAGGGCGGTTAAGTCCTGTTTGACCTGCACTGTCTCCTACTGTGAGCCTCACGTCAGGCAGCACTACACCATCCCAGCTTTGCAGAGACACACCCTGGCCGATGTCATTGGATACGGTGGACACAAAGACCACCATGGTAACactggaaagacagagagaatcaAAGAGGAGAGGAATAATGAGAATGAGGTGGCGGGGAGCGTCTCTAAAAAGATGAAGATGGGGGAAGAAGATTCTGAGCTGAAGAAAATCATCTCTGAGCTGAAGAAGGAGAATTCAGTATTAAAACAAGAGGCAATTGAGAAACAACggatggacatcagaactgcTGACCTGTATAAGACCATCAACAAACTCCGCTCAGACCTTCAGCAGAAAGCAGCTGAGACTGAGAGAGGAAACCTGGAGAATATTACAGCTGGCTGGGTGGAGGTGCCAGCTCTGGGTCGGCCCATTCACCCTGGAATGCTGTATGACTGTTGCTCTGAGTCCTTCACTCCAGACTTCTTGTGTGACTCAGACAATAAGATAAAAAGGAAAATATCCCTGCCGTTCCCATTCACTGAGACCAAGGTAATAGAGACAGACTCTCTGCAGGAAAGGTTCAGAGCTCTGGGACTGGATCAGCCAATCAGAACCAGTTTCCTGTCTGGACTGGTGGATGTGGGAGGAGCTGCAGAGTATCTAAACCATCCTCTCCTGCACAAAGGGGACTATGTGACTCTGCACTACAAGAGAACCACCCGACTGGATCAGTTGACTTTCTTCCTGTTAGAGAAGGTGAGGCGTCCTGAAGTGATTCAGCAGCAAACATCCACACACATGGTCATGGCTGTGACATATGGAACTCAGGCCTTCATCGTTTGTAAGACCAACAGAACATGGACCATGAGCAAAGTTATCAATAAACTGAAGAAAATGATCCAACTTCTCACAGCAGAGGACGGAGCTGCTCAACTAGCTAAATCTTCTGGTCTCACCTGTACCTACTATGGAGATCTTGAGACAAATAGAGGTGATAGAGAGATAACTGATCTCAGTGAGTCCTTCCTTAAGCTGCTGGGGCCCAGTGGAGAGAAGGCTGTTCCTCTGAGAATTTGGCTCTGCCCTCTGAAGAACCTGAACCCTGCAGCAACCTGTGTGAGGGAGATCAGTGAAGACTTGCAgtccagggtagagagagagatggaacactACAGATACACAGGCACAAGGTGTGAGGAGATATTAAAGCATGAGTGGGTCAGTAAAGTTCAGGACCTGAAAGATAAATTGATCAATTTTATAGATCTCATTCAACAGTACCTAGCTCAACTGCAGAAACTGATGGGTAGAATTTTGGTGTCTGTGAGGTCAGGAGTGCAGGAGGAGAAAGCTGTTGAAGAGGAGATGAAAGGTCATGATCTGTCCCCGTTCAGAATGGAAGCAACAGGACAGTGGCTGGATGACAAACAGGCTGAGCTGAAGTTCCTTGAATCTCTTGACTCTAAAATCAGATCTAAGATGGTGTCTACAGACCAGCTGCAAAAAGTCATTAGTAATTCAAAGACAGACACTGTGGTGTGTTTCACTCTCACCTCTCTGGGTGAAACAGACCTGTATCTCTCATCCCTGAAGCAGCATCTTGACTCCCTACAGACATACTCACAGACCAGGCCTGTCCACCGCTACCAGCACACTCAACCCTGGTTCAAGTCTGAGGAGAACAAGGAGAGAGTAACAACGGCAGCTAGAGCTTTTCTTGATTTCGTTAAGGTCACCAAGAAACTCAAGTTCGTTGCAACCTCCATTCCAAATGATTCCACTCCTGGAGCCTCCATCCGTCTCTACCAGGGAGGCAGGTTAGTGGACTCTGACTATGAAGCTGTGTCAAAGCCTGAGACTGTTAAGGTAGTAGACACAGAGCAGAGTAGTGTGACCCTCCTCTTATCCCCGTCAAAGACTGGACACACTGACAGGTTCAGAGTGGAGTACAGACCTGTCAGACCTGACCTGTTCTTTCTCCATGAGGAGAAGAACTGGAGAAGCATGACGACCGGAGAAAATGGGAACGCCTTAGTGATATCAGGCCTggagagagatacacagtacCAGATCAGACACAGAGCAGAGGACATGGCAGGAGTGACTAGTGAGTTCAGTGACATCACAGTGGCAGAGACTGGGTCAGGGTCTGAGCCTGGGCGTCCGGTAGTCCAGTCAGCAGACAGAAACTCGGTCAGTCTGACCTGGAgaagaccagtggaggctgcaaAGGGACGGCCTGTGCTCCACTACAGACTGGAGTACAGAGAGGAGGGACAGGACGAGTGGGTCATACTGCTAACAGACAGGGACGAGTGTGTGTACTCcctaacacccacacacacctcttGCAGAGTCAGAGTGTGTGCCATCTatagagagggagacatgagtgAACCTAGCAAAGAAACAGTCATCCCACTGGCAGCTGATGTGACTCTGGACCCTGATACAGCTCACTGTGAGTTGATCCTGTCTGATAATGGGAGGAGAGTGACAGCAggaaaaaataggaaggttcctAATAACCCACAGAGATTTGATGGGTGGTCCTGTATCCTGGGAAAGGAGGGCTTCCGCTCTGGACGACACTTCTGGCACGTGGAGGTGAATATTGAGGTGGAGGCAAGTTGGGCTGTAGGAGTGACCAGAGAGTCTGCTGAAAGGAAAGGatggttctctttctctccaaatGAAGGTTACTGGTGTCTAAGTAAACCTTCTTGTAGTTCCACCCTGTGTGTCTTCAAGACCAACCTCCCCTGGCCCTCTAACCTCAAAgtgttggatgtgtgtgtggatattGAGGAGAGGTGGGTCTCCTTCTACAACGCCGTGTCCAGGAGTCACGTTTACACCATCACTGACATGGTCTTCACTAAGGGAGAGAGGATCTACCCACTGTTTCGAACTTATGGAAGAGATAAAGGCCTTGTGATCCAGGAGCTGAAATAGACTTCCAGGCATCATAAGAACCCTTGAACAGAAAAGTGGGCAGTCATCCAAAGAGCAGACAACATTAGAGGTTCAGAGTGCGTCCTAATTATCTCCCTTTGTCCCATAGTGTGCACTTGCTCACCCCCCTTCACTGATTTGAAAGAAAATGACTGGTATaagaaatatggtggaaactAACTCCCACTAGCACATGGCTCCACCGATCCAAAATATTAATGGGGAGTAATGaacgagtgcacacttcaggaggaaggagagattttTGGGACACAGACTCAGCGTGTACGACGTTCTGATGCGGTTTAGGGAATTCCATAATCACACACCAGTGCTGTACCTCCCTCTAGTGGCTGGTGTCTGCAGCACATATGTCTGCCAATGTGTGAATAGAAATCTCCAGGGGGTCAGCATttctaatcccccatatattttttggggtaaatatacatatacatacatacatacatacatacattgtaTATAAACATAcctatattttcctttattattttcctctAACCCTACTACCCttggttagtggagatggaggagactgaaacaaaaacatGCTTAAAGTACTTCCTCTTGTTGTGGGACATTCTAATCAAGTGAGCGTTAgactttgtcatttcttcaaTCAATGTATCTTTATTACATAATTATTGTTAAGCATAcatttaaacaaacaaaatacatcTTTCTGGTGCCTGACATTTCCTCCATGGTAAACAACCTTCATTTGAGTTGCTGAGTTTAATACCTTATTTATCAAAACACTGACTctggaaaataatacaaaaaacatACAATTAACGTCACACACACGCTTCATTACAGCAAATGGGACAATCATCCTGCTGACAACTAGCACTGTGGTGGGGTCAGTGTGATGGAAAGGTCAATTATGTTTAGAACCCTTCCTAAACCAGTGACAGAGACCCCTCTTTGGGCACTTTGTACACACAGTGTGGAACATGAGCTCTACATTTGGGCCCTCATGCTCAGGATTGGGGTCCTCATCATCAGAGATGTTGTCAGGAATAGGGAATAGGTCAGGGAAATCATTCAGTTTCCAAATCATAATTAAAACCCAATTATCCAACCGAATTTAGAATGACATTGCTCAGTGATTCACGTTGGTTCTATCACTCAAAGTTAAACCCTCAACTTAGCACACATCGGCTCTAGCAGAATgtacattaacattaacatacaGTGTGATTATCCATAATTCTAGCATGAACTTTCTGGTTGATAAttacagatcagtatctcaatgcattcttagtCTAAATTACTATACATTTCGCAGTGTGTAGACCTCTACAATCAACTTAATACCCCAATACAGGCACAGTTGACCAACCCCTTTCCCTCCCCGTCACTCAGTCTTCTGGAGTCTCTTAATTTTCTTCTTCAGATAGCTTTAAAGTTAGTCCTCCCGATGGCACACatgttcaaagtggatggccctTGATAATGTCTTTCACATTGTCCTTTACAGTCCGTTATGACTTGTCCATCTGCCAACCAGTATACCAGCAACACGAGAGAAGTTTGCTCACTCCACGTGGACTTCTGTCGCACTCCTGAGAGAAAAGGCATGAGAGCACAGGCAGTTGATAGCAGCGACTGGATGCTGTGTACATGTTGCTGGCTCGGACTCAGGTCTCACGGTAAAAGTGGTGAAGGACCATACTGAACGCCATTTTCTCCTCATTACTTCAGACGGTTAGAGGGGGTTTAGGTTCACACTTTTCTCAGTCAAATTGTCCCTTTCATGCAActagatttgtatttattatttattttatttaacctttatttaactaggcaagtcagttaagaacatattcttatttacaatgacggccatcTGTGGTCCAAAGATACCATCTGAGGTCACCTTTGCCATAACCTCGAGAGaggacagatcagaacaacagtttagtttagGGCATTTCTGAGTCAAGAAATCCAGACAAATGATTTACTGTATGACAAGTTATTACTTCTACCAATATTCTTAATACGCATTTCTAAGACACATGTCAAAGAGAATAGCTACATATACTCCCCCATCATATCGACGGCCTCACTGCAGAGCTACAGGGAGGGAGTTAGGTGGCTAATTCTTAGGGAGAAATTTTGATCATccagcagacccaatctggtgaGATTCATATTAAAGCAAGACAGGAAAGGGATTTTTTATCAAtcatgactaattatgtatagatttcaatcaggactgactagtcagaatactattatgttactgtatagatgtatgaattttattttaatcctagtactgaatataatgtgtgtaaatataatcaagaattagaacaatgactgtctgttccttggtagaaatgaatgaacttatcgctagactggctagaatgcttatctacacaggcagaCCTTGGCTCGGTCGTAAATTATCTAAATTAGGAgagacgatgtgggaaggcttgagaactatacagcCTTTGTACCAGGGTGAAGAAGAGACGGGACAGTTCGAAAAcgaatgacgtcattttcagtttgtaacctgtggtaaaatgtatcgtgttcagtactctggAGAATAAACGCTGCTGATTGATTTtaaa

Function

NR:

description
uncharacterized protein LOC110523175 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601630.2 True 6287 mRNA 0.45 8 10402095 10420627

Neighbor

gene id symbol gene type direction distance location
slc38a9 slc38a9 coding upstream 35394 10341232 ~ 10366701 (+)
gp130 gp130 coding upstream 101849 10283000 ~ 10300246 (+)
ankrd55 ankrd55 coding upstream 120745 10262705 ~ 10281350 (+)
LOC110523169 NA coding upstream 277559 10108872 ~ 10124536 (+)
LOC110523166 LOC106571594 coding upstream 527866 9870627 ~ 9874229 (+)
psd3l LOC106571427 coding downstream 24457 10445084 ~ 10584743 (+)
fut10 fut10 coding downstream 205282 10625909 ~ 10637085 (+)
LOC110524950 fut10 coding downstream 233530 10654157 ~ 10656239 (+)
purg purg coding downstream 499444 10920071 ~ 10928473 (+)
LOC110523183 tex15 coding downstream 510909 10931536 ~ 10951201 (+)
G365440 NA non-coding upstream 38787 10362462 ~ 10363308 (+)
G365422 NA non-coding upstream 67668 10333757 ~ 10334427 (+)
G365397 NA non-coding upstream 80900 10320410 ~ 10321195 (+)
G365382 il31r non-coding upstream 95636 10304469 ~ 10306459 (+)
G365371 NA non-coding upstream 148103 10253175 ~ 10253992 (+)
G365499 NA non-coding downstream 64469 10485096 ~ 10485465 (+)
G365534 NA non-coding downstream 108591 10529218 ~ 10625691 (+)
G365570 NA non-coding downstream 172154 10592781 ~ 10593632 (+)
G365686 NA non-coding downstream 357324 10777951 ~ 10779474 (+)
G365709 NA non-coding downstream 398935 10819562 ~ 10821791 (+)
G365197 NA other upstream 552941 9848703 ~ 9849154 (+)
G364850 NA other upstream 1172864 9228838 ~ 9229231 (+)
cdc42se2 cdc42se2 other upstream 1555979 8775134 ~ 8849107 (+)
G362662 NA other upstream 2482530 7918922 ~ 7919565 (+)
G362554 NA other upstream 2709581 7690440 ~ 7692514 (+)
G366748 NA other downstream 556055 10976682 ~ 10977152 (+)
G366973 NA other downstream 1005015 11425642 ~ 11428710 (+)
G367684 NA other downstream 1457702 11878329 ~ 11880035 (+)
G368440 NA other downstream 2688069 13108696 ~ 13109134 (+)
G369763 NA other downstream 3344620 13765247 ~ 13769296 (+)

Expression


Co-expression Network